Wall clock time and date at job start Mon Mar 30 2020 02:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.99622 * 2 1 4 4 O 1.43739 * 109.88308 * 121.09151 * 2 1 3 5 5 C 1.44373 * 106.98082 * 145.93220 * 4 2 1 6 6 C 1.55219 * 103.56820 * 320.01510 * 5 4 2 7 7 C 1.54110 * 109.87763 * 238.92230 * 2 1 3 8 8 C 1.52997 * 110.48978 * 119.73639 * 7 2 1 9 9 N 1.46902 * 110.48396 * 357.21886 * 7 2 1 10 10 C 1.46904 * 110.99709 * 181.84503 * 9 7 2 11 11 C 1.50695 * 109.46798 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00546 * 0.27742 * 11 10 9 13 13 C 1.37885 * 119.99721 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47093 * 60.00328 * 15 13 11 17 17 H 1.48495 * 109.47002 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47239 * 300.00048 * 15 13 11 19 19 H 1.08997 * 109.47519 * 181.08322 * 1 2 3 20 20 H 1.09002 * 109.47205 * 301.08120 * 1 2 3 21 21 H 1.09003 * 109.47136 * 61.07776 * 1 2 3 22 22 H 1.09004 * 110.61606 * 78.43754 * 5 4 2 23 23 H 1.08996 * 110.62256 * 201.27790 * 5 4 2 24 24 H 1.09002 * 110.89176 * 278.74730 * 6 5 4 25 25 H 1.09002 * 111.03000 * 155.06691 * 6 5 4 26 26 H 1.09005 * 109.47133 * 298.15759 * 8 7 2 27 27 H 1.08997 * 109.47073 * 58.15608 * 8 7 2 28 28 H 1.09001 * 109.46922 * 178.15616 * 8 7 2 29 29 H 1.00901 * 110.99720 * 57.89587 * 9 7 2 30 30 H 1.08992 * 109.47223 * 60.00411 * 10 9 7 31 31 H 1.08997 * 109.46992 * 299.99963 * 10 9 7 32 32 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6980 1.1575 5 6 3.2378 -1.3643 0.7645 6 6 2.9215 -1.8914 -0.6608 7 6 2.0539 -0.7481 -1.2413 8 6 2.9045 0.1825 -2.1080 9 7 0.9361 -1.2961 -2.0211 10 6 1.4248 -2.0492 -3.1839 11 6 0.2524 -2.5943 -3.9581 12 1 -0.7551 -2.3969 -3.6227 13 6 0.4658 -3.3398 -5.0982 14 7 1.6924 -3.5756 -5.5097 15 14 -0.9874 -4.0161 -6.0575 16 1 -1.8424 -2.8927 -6.5183 17 1 -0.4935 -4.7773 -7.2330 18 1 -1.7817 -4.9165 -5.1835 19 1 -0.3634 -1.0274 0.0194 20 1 -0.3634 0.5305 0.8801 21 1 -0.3633 0.4970 -0.8995 22 1 4.0684 -0.6590 0.7354 23 1 3.4599 -2.1892 1.4415 24 1 2.3571 -2.8228 -0.6144 25 1 3.8347 -2.0200 -1.2418 26 1 2.2914 1.0119 -2.4606 27 1 3.7352 0.5699 -1.5181 28 1 3.2930 -0.3713 -2.9627 29 1 0.3006 -0.5655 -2.3046 30 1 2.0520 -2.8738 -2.8453 31 1 2.0080 -1.3887 -3.8256 32 1 1.8425 -4.1003 -6.3116 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235596039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:45 Heat of formation + Delta-G solvation = -49.553046 kcal Electronic energy + Delta-G solvation = -13413.877116 eV Core-core repulsion = 11181.234366 eV Total energy + Delta-G solvation = -2232.642750 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.64743 -35.46888 -32.74767 -31.20548 -30.14776 -27.80992 -26.02932 -23.89684 -22.34884 -21.31988 -18.63521 -16.62097 -15.64469 -15.44698 -15.11344 -14.65713 -14.05731 -13.34872 -13.18183 -12.70021 -12.19814 -11.92889 -11.81450 -11.58157 -11.41298 -11.01890 -10.82068 -10.70215 -10.58729 -10.45790 -10.14471 -9.76384 -9.36664 -9.13189 -8.48661 -7.29023 -6.04139 -4.05606 3.32730 3.36720 3.39875 4.21042 4.41716 4.89969 5.02922 5.23099 5.31913 5.36764 5.47157 5.66713 5.75164 5.85117 5.87693 6.01520 6.09327 6.21570 6.29882 6.40466 6.58553 6.60753 6.76994 7.21328 7.31208 7.44425 7.77745 8.12637 8.37452 8.60558 9.03343 9.59021 11.06788 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053152 B = 0.008926 C = 0.008420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.665208 B = 3136.237310 C = 3324.613447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.084 3.916 3 H 0.058 0.942 4 O -0.377 6.377 5 C 0.048 3.952 6 C -0.137 4.137 7 C 0.082 3.918 8 C -0.175 4.175 9 N -0.670 5.670 10 C 0.191 3.809 11 C -0.515 4.515 12 H 0.061 0.939 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 H 0.079 0.921 20 H 0.046 0.954 21 H 0.064 0.936 22 H 0.052 0.948 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.330 0.670 30 H 0.029 0.971 31 H -0.009 1.009 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 6.217 8.412 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.026 3.974 3 H 0.076 0.924 4 O -0.296 6.296 5 C -0.029 4.029 6 C -0.175 4.175 7 C -0.011 4.011 8 C -0.234 4.234 9 N -0.301 5.301 10 C 0.065 3.935 11 C -0.553 4.553 12 H 0.079 0.921 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 H 0.098 0.902 20 H 0.065 0.935 21 H 0.083 0.917 22 H 0.070 0.930 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.149 0.851 30 H 0.047 0.953 31 H 0.009 0.991 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.058 5.551 8.858 10.654 hybrid contribution -0.184 0.312 -1.520 1.562 sum 1.874 5.863 7.338 9.577 Atomic orbital electron populations 1.21720 0.93384 1.03926 1.00540 1.22790 0.95739 0.94168 0.84727 0.92381 1.88824 1.39667 1.67807 1.33322 1.23508 0.87455 0.95905 0.96029 1.23192 0.99725 0.99716 0.94905 1.22215 0.91958 0.93104 0.93804 1.22508 1.00045 0.99784 1.01067 1.61076 1.14402 1.27889 1.26760 1.19613 0.95800 0.92598 0.85534 1.21160 0.93220 1.32653 1.08292 0.92103 1.24975 0.95830 0.96345 0.97371 1.69948 1.19583 1.39909 1.24307 0.86558 0.82519 0.79077 0.79222 1.20313 1.21373 1.20166 0.90210 0.93488 0.91691 0.92990 0.89448 0.89259 0.90776 0.92889 0.93177 0.91138 0.85149 0.95251 0.99126 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.50 37.15 0.32 -1.81 16 2 C 0.08 1.35 3.73 -26.15 -0.10 1.25 16 3 H 0.06 0.86 7.69 -51.93 -0.40 0.46 16 4 O -0.38 -6.37 11.19 -35.23 -0.39 -6.77 16 5 C 0.05 0.70 7.72 38.33 0.30 1.00 16 6 C -0.14 -2.36 5.28 -24.60 -0.13 -2.49 16 7 C 0.08 1.45 0.86 -130.07 -0.11 1.34 16 8 C -0.17 -2.89 8.00 37.16 0.30 -2.59 16 9 N -0.67 -14.03 4.87 -99.67 -0.49 -14.52 16 10 C 0.19 4.87 4.82 -4.98 -0.02 4.85 16 11 C -0.51 -14.43 9.32 -34.44 -0.32 -14.75 16 12 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 15 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H 0.08 1.38 7.75 -51.93 -0.40 0.98 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.94 6.93 -51.93 -0.36 0.58 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.09 1.72 7.84 -51.93 -0.41 1.31 16 25 H 0.07 1.23 7.86 -51.93 -0.41 0.82 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.32 6.45 -51.93 -0.33 0.98 16 29 H 0.33 6.63 7.01 -39.29 -0.28 6.36 16 30 H 0.03 0.81 7.09 -51.93 -0.37 0.44 16 31 H -0.01 -0.24 6.36 -51.93 -0.33 -0.57 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 255.69 15.07 3.85 3.85 Total: -1.00 -29.57 255.69 -6.13 -35.69 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.94 Total: 2.67 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 0.13 Total: -11.72 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.25 Total: -40.38 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.39 Total: -6.77 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.57 -6.13 -35.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235596039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.860 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds