Wall clock time and date at job start Mon Mar 30 2020 02:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.99622 * 2 1 4 4 O 1.43739 * 109.88308 * 121.09151 * 2 1 3 5 5 C 1.44373 * 106.98082 * 145.93220 * 4 2 1 6 6 C 1.55219 * 103.56820 * 320.01510 * 5 4 2 7 7 C 1.54110 * 109.87763 * 238.92230 * 2 1 3 8 8 C 1.52997 * 110.48978 * 119.73639 * 7 2 1 9 9 N 1.46902 * 110.48396 * 357.21886 * 7 2 1 10 10 C 1.46904 * 110.99709 * 181.84503 * 9 7 2 11 11 C 1.50695 * 109.46798 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00546 * 0.27742 * 11 10 9 13 13 C 1.37885 * 119.99721 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47093 * 60.00328 * 15 13 11 17 17 H 1.48495 * 109.47002 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47239 * 300.00048 * 15 13 11 19 19 H 1.08997 * 109.47519 * 181.08322 * 1 2 3 20 20 H 1.09002 * 109.47205 * 301.08120 * 1 2 3 21 21 H 1.09003 * 109.47136 * 61.07776 * 1 2 3 22 22 H 1.09004 * 110.61606 * 78.43754 * 5 4 2 23 23 H 1.08996 * 110.62256 * 201.27790 * 5 4 2 24 24 H 1.09002 * 110.89176 * 278.74730 * 6 5 4 25 25 H 1.09002 * 111.03000 * 155.06691 * 6 5 4 26 26 H 1.09005 * 109.47133 * 298.15759 * 8 7 2 27 27 H 1.08997 * 109.47073 * 58.15608 * 8 7 2 28 28 H 1.09001 * 109.46922 * 178.15616 * 8 7 2 29 29 H 1.00901 * 110.99720 * 57.89587 * 9 7 2 30 30 H 1.08992 * 109.47223 * 60.00411 * 10 9 7 31 31 H 1.08997 * 109.46992 * 299.99963 * 10 9 7 32 32 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6980 1.1575 5 6 3.2378 -1.3643 0.7645 6 6 2.9215 -1.8914 -0.6608 7 6 2.0539 -0.7481 -1.2413 8 6 2.9045 0.1825 -2.1080 9 7 0.9361 -1.2961 -2.0211 10 6 1.4248 -2.0492 -3.1839 11 6 0.2524 -2.5943 -3.9581 12 1 -0.7551 -2.3969 -3.6227 13 6 0.4658 -3.3398 -5.0982 14 7 1.6924 -3.5756 -5.5097 15 14 -0.9874 -4.0161 -6.0575 16 1 -1.8424 -2.8927 -6.5183 17 1 -0.4935 -4.7773 -7.2330 18 1 -1.7817 -4.9165 -5.1835 19 1 -0.3634 -1.0274 0.0194 20 1 -0.3634 0.5305 0.8801 21 1 -0.3633 0.4970 -0.8995 22 1 4.0684 -0.6590 0.7354 23 1 3.4599 -2.1892 1.4415 24 1 2.3571 -2.8228 -0.6144 25 1 3.8347 -2.0200 -1.2418 26 1 2.2914 1.0119 -2.4606 27 1 3.7352 0.5699 -1.5181 28 1 3.2930 -0.3713 -2.9627 29 1 0.3006 -0.5655 -2.3046 30 1 2.0520 -2.8738 -2.8453 31 1 2.0080 -1.3887 -3.8256 32 1 1.8425 -4.1003 -6.3116 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235596039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:45 Heat of formation + Delta-G solvation = -69.985515 kcal Electronic energy + Delta-G solvation = -13414.763135 eV Core-core repulsion = 11181.234366 eV Total energy + Delta-G solvation = -2233.528768 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.00070 -37.05754 -34.78356 -32.47601 -31.87711 -29.13494 -28.01223 -25.21521 -24.14763 -22.78852 -20.11412 -18.64233 -17.03722 -16.79115 -16.63540 -16.47898 -15.70355 -14.89445 -14.73536 -14.10498 -13.99889 -13.37620 -13.26758 -13.07121 -13.02943 -12.71492 -12.58496 -12.26878 -12.14195 -11.92756 -11.80674 -11.31177 -11.24463 -10.65235 -10.53993 -9.04500 -8.21350 -6.31280 1.40456 1.43532 1.51338 2.39856 2.97378 3.12044 3.45527 3.58674 3.93375 4.07033 4.24346 4.33493 4.49119 4.58271 4.68464 4.73189 4.75536 4.94121 4.99165 5.05830 5.15013 5.19702 5.26964 5.42654 5.50600 5.63873 6.00049 6.06681 6.49079 6.76236 6.92688 7.39050 8.89517 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053152 B = 0.008926 C = 0.008420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.665208 B = 3136.237310 C = 3324.613447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.087 3.913 3 H 0.083 0.917 4 O -0.391 6.391 5 C 0.055 3.945 6 C -0.142 4.142 7 C 0.073 3.927 8 C -0.167 4.167 9 N -0.670 5.670 10 C 0.210 3.790 11 C -0.536 4.536 12 H 0.062 0.938 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.969 3.031 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.271 1.271 19 H 0.054 0.946 20 H 0.065 0.935 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.105 0.895 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.335 0.665 30 H 0.000 1.000 31 H -0.030 1.030 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.666 7.177 9.077 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.029 3.971 3 H 0.100 0.900 4 O -0.311 6.311 5 C -0.022 4.022 6 C -0.180 4.180 7 C -0.020 4.020 8 C -0.226 4.226 9 N -0.302 5.302 10 C 0.083 3.917 11 C -0.574 4.574 12 H 0.080 0.920 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.793 3.207 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.196 1.196 19 H 0.073 0.927 20 H 0.084 0.916 21 H 0.091 0.909 22 H 0.096 0.904 23 H 0.123 0.877 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.154 0.846 30 H 0.018 0.982 31 H -0.012 1.012 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.589 6.527 9.543 11.670 hybrid contribution 0.002 0.023 -1.679 1.680 sum 1.590 6.550 7.864 10.357 Atomic orbital electron populations 1.21696 0.93105 1.02715 1.01880 1.22829 0.96073 0.94793 0.83368 0.89954 1.88810 1.40650 1.68106 1.33521 1.23623 0.87423 0.96916 0.94221 1.23177 0.99244 0.98444 0.97131 1.22414 0.91322 0.93837 0.94377 1.22410 1.00830 0.99309 1.00093 1.60939 1.15845 1.28560 1.24812 1.19192 0.94421 0.91730 0.86375 1.21557 0.93898 1.33034 1.08960 0.92028 1.25892 0.98709 0.96532 0.98429 1.70076 1.21764 1.40564 1.24839 0.85449 0.78961 0.78587 0.77675 1.19128 1.20868 1.19585 0.92685 0.91560 0.90925 0.90355 0.87691 0.92255 0.90817 0.91999 0.90299 0.94058 0.84565 0.98156 1.01213 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 8.50 71.98 0.61 -3.35 16 2 C 0.09 2.61 3.73 30.97 0.12 2.73 16 3 H 0.08 2.12 7.69 -2.39 -0.02 2.10 16 4 O -0.39 -12.29 11.19 -148.98 -1.67 -13.96 16 5 C 0.05 1.47 7.72 72.74 0.56 2.03 16 6 C -0.14 -4.85 5.28 31.97 0.17 -4.68 16 7 C 0.07 2.51 0.86 4.52 0.00 2.52 16 8 C -0.17 -5.34 8.00 71.98 0.58 -4.76 16 9 N -0.67 -28.33 4.87 -469.24 -2.29 -30.61 16 10 C 0.21 11.07 4.82 85.55 0.41 11.48 16 11 C -0.54 -30.51 9.32 25.60 0.24 -30.27 16 12 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 13 C 0.00 0.15 5.46 84.66 0.46 0.61 16 14 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 15 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 19 H 0.05 1.86 7.75 -2.39 -0.02 1.85 16 20 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.07 1.97 6.93 -2.39 -0.02 1.95 16 22 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.10 2.45 8.14 -2.39 -0.02 2.44 16 24 H 0.06 2.36 7.84 -2.39 -0.02 2.34 16 25 H 0.07 2.47 7.86 -2.39 -0.02 2.45 16 26 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.55 6.45 -2.39 -0.02 1.53 16 29 H 0.34 13.42 7.01 -89.69 -0.63 12.79 16 30 H 0.00 0.02 7.09 -2.39 -0.02 0.00 16 31 H -0.03 -1.66 6.36 -2.39 -0.02 -1.68 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -63.42 255.69 1.97 -61.45 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.46 Total: 16.23 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 3.15 Total: -23.69 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -2.00 Total: -86.48 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.67 Total: -13.96 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -63.42 1.97 -61.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235596039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.538 kcal (2) G-P(sol) polarization free energy of solvation -63.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds