Wall clock time and date at job start Mon Mar 30 2020 02:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.99148 * 2 1 4 4 O 1.43741 * 109.87852 * 121.08605 * 2 1 3 5 5 C 1.44385 * 106.97364 * 145.93555 * 4 2 1 6 6 C 1.54990 * 103.49150 * 319.94086 * 5 4 2 7 7 C 1.54103 * 109.87597 * 238.92019 * 2 1 3 8 8 H 1.09002 * 110.60269 * 119.81525 * 7 2 1 9 9 C 1.52995 * 110.48770 * 357.21865 * 7 2 1 10 10 N 1.46906 * 109.46978 * 178.78256 * 9 7 2 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46921 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47094 * 90.00289 * 16 14 12 18 18 H 1.48505 * 109.47195 * 210.00171 * 16 14 12 19 19 H 1.48493 * 109.47449 * 330.00136 * 16 14 12 20 20 H 1.08994 * 109.47541 * 181.08451 * 1 2 3 21 21 H 1.09001 * 109.46964 * 301.08229 * 1 2 3 22 22 H 1.08998 * 109.47418 * 61.07907 * 1 2 3 23 23 H 1.09000 * 110.62166 * 201.43524 * 5 4 2 24 24 H 1.09004 * 110.75126 * 78.50332 * 5 4 2 25 25 H 1.08999 * 110.90559 * 278.82519 * 6 5 4 26 26 H 1.09004 * 110.90869 * 155.22226 * 6 5 4 27 27 H 1.08995 * 109.46859 * 58.78548 * 9 7 2 28 28 H 1.09002 * 109.47639 * 298.78216 * 9 7 2 29 29 H 1.00898 * 110.99995 * 303.95410 * 10 9 7 30 30 H 1.09002 * 109.47401 * 59.99808 * 11 10 9 31 31 H 1.09001 * 109.46874 * 299.99821 * 11 10 9 32 32 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0187 -0.6979 1.1576 5 6 3.2379 -1.3642 0.7646 6 6 2.9195 -1.8914 -0.6577 7 6 2.0539 -0.7481 -1.2412 8 1 2.6614 -0.0871 -1.8594 9 6 0.8897 -1.3189 -2.0534 10 7 1.4121 -2.0013 -3.2449 11 6 0.3200 -2.5628 -4.0512 12 6 0.8931 -3.2527 -5.2622 13 1 1.9617 -3.2725 -5.4172 14 6 0.0532 -3.8595 -6.1718 15 7 -1.2481 -3.8358 -5.9828 16 14 0.7636 -4.7153 -7.6725 17 1 1.0349 -6.1389 -7.3484 18 1 -0.2087 -4.6392 -8.7924 19 1 2.0294 -4.0483 -8.0699 20 1 -0.3634 -1.0274 0.0194 21 1 -0.3633 0.5306 0.8801 22 1 -0.3634 0.4970 -0.8995 23 1 3.4585 -2.1908 1.4399 24 1 4.0703 -0.6610 0.7358 25 1 2.3539 -2.8220 -0.6100 26 1 3.8331 -2.0224 -1.2376 27 1 0.2285 -0.5083 -2.3596 28 1 0.3340 -2.0299 -1.4419 29 1 1.9850 -1.3796 -3.7956 30 1 -0.3450 -1.7605 -4.3712 31 1 -0.2400 -3.2822 -3.4536 32 1 -1.8390 -4.2625 -6.6229 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235630877.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:15 Heat of formation + Delta-G solvation = -57.761045 kcal Electronic energy + Delta-G solvation = -12891.164031 eV Core-core repulsion = 10658.165355 eV Total energy + Delta-G solvation = -2232.998676 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.60872 -35.53860 -33.04599 -31.63164 -31.15509 -27.30456 -25.56136 -23.67327 -21.94929 -21.38702 -19.37198 -16.49272 -16.37028 -15.55573 -15.13995 -14.61457 -14.58657 -13.66046 -13.52327 -12.54901 -12.28123 -12.16865 -12.02074 -11.70203 -11.32049 -11.04503 -10.88283 -10.76019 -10.54268 -10.46866 -10.26541 -9.90284 -9.50003 -9.16837 -8.48287 -7.28212 -6.03936 -4.06040 3.31621 3.37271 3.40912 3.99731 4.41678 4.69617 4.92257 4.99159 5.22134 5.31959 5.35255 5.49342 5.57345 5.69632 5.75630 5.83414 5.96259 5.99457 6.14431 6.28039 6.34355 6.42196 6.55498 7.05667 7.24938 7.41487 7.77683 8.12306 8.38672 8.60918 9.03374 9.58985 11.07243 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.066292 B = 0.006740 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.274615 B = 4153.128749 C = 4432.254356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.078 3.922 3 H 0.063 0.937 4 O -0.379 6.379 5 C 0.042 3.958 6 C -0.134 4.134 7 C -0.116 4.116 8 H 0.077 0.923 9 C 0.067 3.933 10 N -0.690 5.690 11 C 0.194 3.806 12 C -0.515 4.515 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.068 0.932 21 H 0.055 0.945 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.023 0.977 28 H 0.069 0.931 29 H 0.326 0.674 30 H -0.014 1.014 31 H 0.027 0.973 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.113 6.675 10.151 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 H 0.081 0.919 4 O -0.299 6.299 5 C -0.034 4.034 6 C -0.171 4.171 7 C -0.135 4.135 8 H 0.095 0.905 9 C -0.062 4.062 10 N -0.320 5.320 11 C 0.067 3.933 12 C -0.553 4.553 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 H 0.087 0.913 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.106 0.894 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.142 0.858 30 H 0.003 0.997 31 H 0.045 0.955 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.946 6.013 10.603 13.562 hybrid contribution -0.016 0.320 -1.489 1.523 sum 5.931 6.333 9.113 12.583 Atomic orbital electron populations 1.22018 0.93912 1.03266 1.01900 1.22719 0.95228 0.95091 0.85007 0.91948 1.88846 1.39813 1.67815 1.33416 1.23584 0.87406 0.96018 0.96418 1.23030 1.00441 0.99160 0.94494 1.22580 0.97777 0.96963 0.96216 0.90478 1.22062 0.94301 0.96414 0.93457 1.60668 1.24574 1.37604 1.09182 1.19541 0.88239 0.93829 0.91644 1.21196 0.93580 1.34572 1.05976 0.91980 1.24999 0.94792 0.96440 0.98389 1.69964 1.02404 1.44660 1.36743 0.86476 0.78726 0.79945 0.82117 1.20597 1.21288 1.19865 0.91315 0.92619 0.90957 0.89390 0.92750 0.89874 0.90294 0.95917 0.91307 0.85756 0.99671 0.95483 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.40 37.16 0.31 -1.69 16 2 C 0.08 1.05 4.05 -26.16 -0.11 0.94 16 3 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 4 O -0.38 -5.56 11.19 -35.23 -0.39 -5.96 16 5 C 0.04 0.52 7.72 38.21 0.29 0.82 16 6 C -0.13 -1.86 6.52 -24.72 -0.16 -2.02 16 7 C -0.12 -1.68 3.23 -89.09 -0.29 -1.97 16 8 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 9 C 0.07 1.19 3.80 -3.82 -0.01 1.18 16 10 N -0.69 -14.72 6.30 -115.05 -0.72 -15.44 16 11 C 0.19 5.13 5.44 -4.97 -0.03 5.10 16 12 C -0.51 -14.69 9.32 -34.44 -0.32 -15.01 16 13 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 16 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H 0.07 0.97 6.75 -51.93 -0.35 0.62 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 22 H 0.07 0.90 6.80 -51.93 -0.35 0.55 16 23 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.08 1.30 7.83 -51.93 -0.41 0.90 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.02 0.40 6.65 -51.93 -0.35 0.06 16 28 H 0.07 1.28 6.85 -51.93 -0.36 0.92 16 29 H 0.33 6.64 8.72 -39.29 -0.34 6.30 16 30 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 260.42 15.07 3.92 3.92 Total: -1.00 -30.28 260.42 -6.97 -37.25 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.08 Total: 0.95 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.41 Total: -11.16 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.01 Total: -41.75 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.39 Total: -5.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.28 -6.97 -37.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235630877.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.512 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds