Wall clock time and date at job start Mon Mar 30 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.50317 * 2 1 4 4 C 1.53037 * 109.50485 * 239.87869 * 2 1 3 5 5 N 1.46840 * 109.52502 * 299.24111 * 4 2 1 6 6 C 1.46901 * 111.00289 * 174.16036 * 5 4 2 7 7 C 1.46851 * 111.19691 * 298.25733 * 5 4 2 8 8 C 1.53038 * 109.52447 * 61.74180 * 7 5 4 9 9 H 1.08999 * 109.50083 * 60.76193 * 8 7 5 10 10 C 1.50698 * 109.50461 * 180.87839 * 8 7 5 11 11 H 1.08002 * 119.99822 * 119.99771 * 10 8 7 12 12 C 1.37872 * 120.00018 * 300.00105 * 10 8 7 13 13 N 1.31516 * 120.00291 * 179.97438 * 12 10 8 14 14 Si 1.86799 * 120.00208 * 359.97438 * 12 10 8 15 15 H 1.48505 * 109.47155 * 90.00051 * 14 12 10 16 16 H 1.48501 * 109.47598 * 209.99748 * 14 12 10 17 17 H 1.48496 * 109.47110 * 330.00402 * 14 12 10 18 18 C 1.53116 * 109.50174 * 120.07558 * 2 1 3 19 19 H 1.09001 * 109.52592 * 182.19126 * 18 2 1 20 20 O 1.42897 * 109.52575 * 302.38144 * 18 2 1 21 21 H 1.08996 * 109.47172 * 299.92432 * 1 2 3 22 22 H 1.09003 * 109.46871 * 59.92514 * 1 2 3 23 23 H 1.09003 * 109.47344 * 179.91870 * 1 2 3 24 24 H 1.09005 * 109.46302 * 179.21959 * 4 2 1 25 25 H 1.09002 * 109.45897 * 59.26005 * 4 2 1 26 26 H 1.09002 * 109.47401 * 180.25465 * 6 5 4 27 27 H 1.09001 * 109.46874 * 60.25478 * 6 5 4 28 28 H 1.09004 * 109.46970 * 300.25611 * 6 5 4 29 29 H 1.09001 * 109.46189 * 181.75691 * 7 5 4 30 30 H 1.08996 * 109.46134 * 301.72236 * 7 5 4 31 31 H 0.96998 * 120.00613 * 179.97438 * 13 12 10 32 32 H 0.96695 * 114.00305 * 299.68574 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0410 -0.7239 -1.2478 5 7 1.5676 -2.1139 -1.2371 6 6 1.9223 -2.8005 -2.4864 7 6 2.0846 -2.8420 -0.0713 8 6 1.5749 -2.1813 1.2116 9 1 0.4856 -2.2157 1.2306 10 6 2.1232 -2.9158 2.4078 11 1 2.7397 -2.3948 3.1254 12 6 1.8377 -4.2528 2.5862 13 7 2.3166 -4.8940 3.6299 14 14 0.7708 -5.1538 1.3454 15 1 1.6304 -5.7343 0.2826 16 1 0.0270 -6.2418 2.0297 17 1 -0.1929 -4.2015 0.7375 18 6 2.0411 -0.7233 1.2490 19 1 3.1304 -0.6897 1.2693 20 8 1.5207 -0.0854 2.4169 21 1 -0.3633 0.5126 0.8906 22 1 -0.3633 0.5150 -0.8893 23 1 -0.3634 -1.0277 -0.0015 24 1 3.1309 -0.7114 -1.2541 25 1 1.6670 -0.2196 -2.1388 26 1 1.5560 -3.8266 -2.4538 27 1 3.0061 -2.8052 -2.6033 28 1 1.4682 -2.2791 -3.3291 29 1 1.7423 -3.8762 -0.1080 30 1 3.1742 -2.8197 -0.0832 31 1 2.1155 -5.8345 3.7556 32 1 1.7769 0.8428 2.5053 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238805014.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:27 Heat of formation + Delta-G solvation = -44.878369 kcal Electronic energy + Delta-G solvation = -13891.738432 eV Core-core repulsion = 11659.298391 eV Total energy + Delta-G solvation = -2232.440041 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.11582 -35.72269 -33.13722 -32.34819 -30.58854 -26.59036 -25.62897 -24.70591 -21.96405 -20.98997 -18.15045 -16.83056 -16.41783 -15.46441 -14.58103 -14.43727 -13.94074 -13.82392 -13.23557 -12.62656 -12.54636 -12.15292 -11.64696 -11.48028 -11.38143 -11.03961 -10.87193 -10.66568 -10.37162 -10.13881 -9.73969 -9.36222 -8.99030 -8.76355 -8.50036 -7.80748 -6.01187 -3.98805 3.27810 3.42145 3.48841 4.40309 4.48136 5.00455 5.21190 5.32606 5.38665 5.55697 5.59853 5.75393 5.90852 5.92700 6.02045 6.09744 6.16667 6.34788 6.43482 6.46284 6.49354 6.73058 6.88731 6.96554 7.35936 7.57623 7.64856 7.84561 8.45752 8.63516 9.06707 9.60163 11.12244 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.031931 B = 0.017115 C = 0.012813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.677189 B = 1635.608845 C = 2184.717374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.124 4.124 3 H 0.062 0.938 4 C 0.068 3.932 5 N -0.546 5.546 6 C 0.025 3.975 7 C 0.054 3.946 8 C 0.026 3.974 9 H 0.047 0.953 10 C -0.500 4.500 11 H 0.077 0.923 12 C 0.067 3.933 13 N -0.902 5.902 14 Si 0.877 3.123 15 H -0.282 1.282 16 H -0.296 1.296 17 H -0.257 1.257 18 C 0.126 3.874 19 H 0.041 0.959 20 O -0.546 6.546 21 H 0.051 0.949 22 H 0.038 0.962 23 H 0.072 0.928 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.020 0.980 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.263 0.737 32 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 7.841 -10.432 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.144 4.144 3 H 0.080 0.920 4 C -0.061 4.061 5 N -0.271 5.271 6 C -0.123 4.123 7 C -0.073 4.073 8 C 0.007 3.993 9 H 0.065 0.935 10 C -0.538 4.538 11 H 0.095 0.905 12 C -0.134 4.134 13 N -0.540 5.540 14 Si 0.707 3.293 15 H -0.209 1.209 16 H -0.223 1.223 17 H -0.181 1.181 18 C 0.067 3.933 19 H 0.059 0.941 20 O -0.348 6.348 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.090 0.910 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.828 7.064 -10.210 12.549 hybrid contribution 0.735 -0.155 -0.879 1.156 sum -1.093 6.909 -11.089 13.111 Atomic orbital electron populations 1.21627 0.94166 1.03169 0.99823 1.21959 0.97996 0.98160 0.96238 0.91980 1.21965 0.96751 0.89567 0.97781 1.62031 1.60258 1.02047 1.02752 1.22323 0.98170 0.99425 0.92419 1.22755 0.97272 0.97405 0.89891 1.19181 0.98138 0.89663 0.92301 0.93547 1.20960 1.31826 0.94419 1.06599 0.90499 1.25023 0.95476 0.97531 0.95348 1.69891 1.45490 1.10147 1.28498 0.86991 0.81597 0.79641 0.81029 1.20908 1.22339 1.18133 1.21824 0.95305 0.94072 0.82127 0.94102 1.86737 1.76736 1.26710 1.44623 0.92944 0.94261 0.90952 0.95417 0.91485 0.91858 0.96113 0.92010 0.91763 0.94904 0.92748 0.80207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.58 37.16 0.32 -1.86 16 2 C -0.12 -2.06 2.94 -90.54 -0.27 -2.33 16 3 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.07 1.09 4.90 -3.84 -0.02 1.07 16 5 N -0.55 -10.17 4.19 -242.96 -1.02 -11.18 16 6 C 0.03 0.39 9.59 60.07 0.58 0.96 16 7 C 0.05 1.19 4.22 -3.83 -0.02 1.17 16 8 C 0.03 0.64 1.23 -91.69 -0.11 0.53 16 9 H 0.05 1.21 5.65 -51.93 -0.29 0.92 16 10 C -0.50 -14.47 8.86 -34.44 -0.31 -14.78 16 11 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 12 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 13 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 14 Si 0.88 22.36 24.37 -169.99 -4.14 18.22 16 15 H -0.28 -6.91 6.88 56.52 0.39 -6.52 16 16 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 17 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 18 C 0.13 2.58 2.57 -26.61 -0.07 2.51 16 19 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 20 O -0.55 -11.15 12.25 -35.23 -0.43 -11.58 16 21 H 0.05 0.86 7.63 -51.93 -0.40 0.46 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 1.40 6.01 -51.93 -0.31 1.09 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 26 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 27 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.52 3.24 -51.93 -0.17 1.35 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.35 5.22 9.09 45.56 0.41 5.63 16 LS Contribution 244.76 15.07 3.69 3.69 Total: -1.00 -32.04 244.76 -5.28 -37.32 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.16 Total: 1.80 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 0.01 Total: -10.83 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.24 Total: -38.62 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.43 Total: -11.58 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.04 -5.28 -37.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238805014.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.556 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds