Wall clock time and date at job start Mon Mar 30 2020 02:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.50317 * 2 1 4 4 C 1.53037 * 109.50485 * 239.87869 * 2 1 3 5 5 N 1.46840 * 109.52502 * 299.24111 * 4 2 1 6 6 C 1.46901 * 111.00289 * 174.16036 * 5 4 2 7 7 C 1.46851 * 111.19691 * 298.25733 * 5 4 2 8 8 C 1.53038 * 109.52447 * 61.74180 * 7 5 4 9 9 H 1.08999 * 109.50083 * 60.76193 * 8 7 5 10 10 C 1.50698 * 109.50461 * 180.87839 * 8 7 5 11 11 H 1.08002 * 119.99822 * 119.99771 * 10 8 7 12 12 C 1.37872 * 120.00018 * 300.00105 * 10 8 7 13 13 N 1.31516 * 120.00291 * 179.97438 * 12 10 8 14 14 Si 1.86799 * 120.00208 * 359.97438 * 12 10 8 15 15 H 1.48505 * 109.47155 * 90.00051 * 14 12 10 16 16 H 1.48501 * 109.47598 * 209.99748 * 14 12 10 17 17 H 1.48496 * 109.47110 * 330.00402 * 14 12 10 18 18 C 1.53116 * 109.50174 * 120.07558 * 2 1 3 19 19 H 1.09001 * 109.52592 * 182.19126 * 18 2 1 20 20 O 1.42897 * 109.52575 * 302.38144 * 18 2 1 21 21 H 1.08996 * 109.47172 * 299.92432 * 1 2 3 22 22 H 1.09003 * 109.46871 * 59.92514 * 1 2 3 23 23 H 1.09003 * 109.47344 * 179.91870 * 1 2 3 24 24 H 1.09005 * 109.46302 * 179.21959 * 4 2 1 25 25 H 1.09002 * 109.45897 * 59.26005 * 4 2 1 26 26 H 1.09002 * 109.47401 * 180.25465 * 6 5 4 27 27 H 1.09001 * 109.46874 * 60.25478 * 6 5 4 28 28 H 1.09004 * 109.46970 * 300.25611 * 6 5 4 29 29 H 1.09001 * 109.46189 * 181.75691 * 7 5 4 30 30 H 1.08996 * 109.46134 * 301.72236 * 7 5 4 31 31 H 0.96998 * 120.00613 * 179.97438 * 13 12 10 32 32 H 0.96695 * 114.00305 * 299.68574 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0410 -0.7239 -1.2478 5 7 1.5676 -2.1139 -1.2371 6 6 1.9223 -2.8005 -2.4864 7 6 2.0846 -2.8420 -0.0713 8 6 1.5749 -2.1813 1.2116 9 1 0.4856 -2.2157 1.2306 10 6 2.1232 -2.9158 2.4078 11 1 2.7397 -2.3948 3.1254 12 6 1.8377 -4.2528 2.5862 13 7 2.3166 -4.8940 3.6299 14 14 0.7708 -5.1538 1.3454 15 1 1.6304 -5.7343 0.2826 16 1 0.0270 -6.2418 2.0297 17 1 -0.1929 -4.2015 0.7375 18 6 2.0411 -0.7233 1.2490 19 1 3.1304 -0.6897 1.2693 20 8 1.5207 -0.0854 2.4169 21 1 -0.3633 0.5126 0.8906 22 1 -0.3633 0.5150 -0.8893 23 1 -0.3634 -1.0277 -0.0015 24 1 3.1309 -0.7114 -1.2541 25 1 1.6670 -0.2196 -2.1388 26 1 1.5560 -3.8266 -2.4538 27 1 3.0061 -2.8052 -2.6033 28 1 1.4682 -2.2791 -3.3291 29 1 1.7423 -3.8762 -0.1080 30 1 3.1742 -2.8197 -0.0832 31 1 2.1155 -5.8345 3.7556 32 1 1.7769 0.8428 2.5053 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238805014.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:26 Heat of formation + Delta-G solvation = -71.223383 kcal Electronic energy + Delta-G solvation = -13892.880838 eV Core-core repulsion = 11659.298391 eV Total energy + Delta-G solvation = -2233.582446 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.63626 -37.24044 -35.21740 -33.74103 -32.55803 -27.85816 -27.22267 -26.56348 -23.46988 -22.69688 -19.70903 -18.96410 -18.02367 -17.16705 -16.01327 -15.83512 -15.77658 -15.49661 -14.94323 -14.43387 -13.95006 -13.63827 -13.26176 -12.95530 -12.76571 -12.73185 -12.48449 -12.32468 -12.07262 -11.68815 -11.63679 -11.28213 -10.80471 -10.71973 -10.40438 -9.21668 -8.30771 -6.33054 1.23967 1.33883 1.46458 2.29979 2.94876 3.14602 3.59495 3.87956 3.92300 4.19977 4.30768 4.43427 4.51850 4.56139 4.65212 4.76672 4.82243 4.94724 4.97654 5.00093 5.14789 5.17580 5.31206 5.47957 5.63146 5.73640 6.05493 6.24084 6.36350 6.72767 7.16293 7.30497 8.86657 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.031931 B = 0.017115 C = 0.012813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.677189 B = 1635.608845 C = 2184.717374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.116 4.116 3 H 0.099 0.901 4 C 0.064 3.936 5 N -0.556 5.556 6 C 0.023 3.977 7 C 0.064 3.936 8 C 0.025 3.975 9 H 0.029 0.971 10 C -0.506 4.506 11 H 0.031 0.969 12 C 0.010 3.990 13 N -0.950 5.950 14 Si 0.945 3.055 15 H -0.264 1.264 16 H -0.296 1.296 17 H -0.249 1.249 18 C 0.125 3.875 19 H 0.032 0.968 20 O -0.572 6.572 21 H 0.048 0.952 22 H 0.069 0.931 23 H 0.040 0.960 24 H 0.033 0.967 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.023 0.977 31 H 0.265 0.735 32 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 9.126 -13.378 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.135 4.135 3 H 0.117 0.883 4 C -0.063 4.063 5 N -0.281 5.281 6 C -0.125 4.125 7 C -0.064 4.064 8 C 0.006 3.994 9 H 0.047 0.953 10 C -0.545 4.545 11 H 0.049 0.951 12 C -0.187 4.187 13 N -0.591 5.591 14 Si 0.772 3.228 15 H -0.190 1.190 16 H -0.224 1.224 17 H -0.173 1.173 18 C 0.066 3.934 19 H 0.049 0.951 20 O -0.378 6.378 21 H 0.067 0.933 22 H 0.088 0.912 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.121 0.879 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.112 0.888 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.526 8.387 -13.178 15.824 hybrid contribution 0.999 -0.453 0.115 1.103 sum -1.528 7.934 -13.063 15.360 Atomic orbital electron populations 1.21567 0.94099 1.01504 1.01150 1.21918 0.97900 0.99588 0.94057 0.88261 1.22130 0.97245 0.88148 0.98788 1.61974 1.60414 1.03173 1.02494 1.22433 0.99014 0.99395 0.91661 1.22351 0.96494 0.96772 0.90760 1.19075 0.96693 0.92104 0.91500 0.95293 1.21242 1.30880 0.94734 1.07627 0.95112 1.25882 0.96961 0.98508 0.97342 1.70046 1.47539 1.10693 1.30819 0.85900 0.79937 0.78204 0.78770 1.18980 1.22368 1.17253 1.21720 0.94782 0.92610 0.84316 0.95050 1.86663 1.76976 1.28947 1.45177 0.93301 0.91248 0.94052 0.94908 0.87894 0.92394 0.95337 0.88818 0.93307 0.95845 0.92572 0.77333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 8.58 71.98 0.62 -3.18 16 2 C -0.12 -3.44 2.94 -10.74 -0.03 -3.47 16 3 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 4 C 0.06 1.80 4.90 86.33 0.42 2.22 16 5 N -0.56 -18.96 4.19 -922.58 -3.87 -22.82 16 6 C 0.02 0.61 9.59 127.69 1.22 1.84 16 7 C 0.06 2.77 4.22 86.33 0.36 3.14 16 8 C 0.03 1.24 1.23 -11.49 -0.01 1.23 16 9 H 0.03 1.52 5.65 -2.39 -0.01 1.50 16 10 C -0.51 -30.46 8.86 25.60 0.23 -30.23 16 11 H 0.03 2.07 7.99 -2.91 -0.02 2.04 16 12 C 0.01 0.58 5.45 84.65 0.46 1.04 16 13 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 14 Si 0.95 47.02 24.37 68.60 1.67 48.69 16 15 H -0.26 -12.25 6.88 99.48 0.68 -11.57 16 16 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 17 H -0.25 -11.91 6.53 99.48 0.65 -11.26 16 18 C 0.12 5.01 2.57 30.67 0.08 5.09 16 19 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 20 O -0.57 -23.21 12.25 -148.98 -1.83 -25.03 16 21 H 0.05 1.48 7.63 -2.39 -0.02 1.46 16 22 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.04 1.51 6.01 -2.39 -0.01 1.49 16 24 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.10 2.22 8.12 -2.39 -0.02 2.20 16 26 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 27 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.05 2.25 3.24 -2.39 -0.01 2.24 16 30 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 32 H 0.38 10.68 9.09 -74.06 -0.67 10.01 16 Total: -1.00 -71.94 244.76 -0.03 -71.97 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.35 Total: 10.85 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 3.35 Total: -22.32 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -3.57 Total: -84.16 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -1.83 Total: -25.03 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.67 Total: 48.69 kcal Total: -71.94 -0.03 -71.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238805014.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.745 kcal (2) G-P(sol) polarization free energy of solvation -71.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds