Wall clock time and date at job start Mon Mar 30 2020 02:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47041 * 2 1 4 4 C 1.50703 * 109.46820 * 239.99994 * 2 1 3 5 5 H 1.08000 * 119.99853 * 239.99357 * 4 2 1 6 6 C 1.37870 * 119.99946 * 60.00156 * 4 2 1 7 7 N 1.31518 * 120.00179 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00031 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46895 * 59.99371 * 8 6 4 10 10 H 1.48498 * 109.47160 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46743 * 299.99951 * 8 6 4 12 12 N 1.46900 * 109.47500 * 119.99795 * 2 1 3 13 13 C 1.47017 * 110.99765 * 63.63629 * 12 2 1 14 14 C 1.53103 * 109.25606 * 177.61039 * 13 12 2 15 15 O 1.43010 * 109.25776 * 56.84682 * 14 13 12 16 16 C 1.43015 * 113.73980 * 301.32744 * 15 14 13 17 17 C 1.47014 * 111.00019 * 300.00253 * 12 2 1 18 18 H 1.09004 * 109.50706 * 62.45483 * 17 12 2 19 19 C 1.53001 * 109.50670 * 302.32337 * 17 12 2 20 20 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47023 * 299.99404 * 1 2 3 22 22 H 1.08993 * 109.47677 * 60.00222 * 1 2 3 23 23 H 0.96995 * 119.99705 * 180.02562 * 7 6 4 24 24 H 1.09006 * 109.50736 * 297.54404 * 13 12 2 25 25 H 1.08995 * 109.50709 * 57.63009 * 13 12 2 26 26 H 1.08993 * 109.50340 * 296.90966 * 14 13 12 27 27 H 1.08999 * 109.50068 * 176.78574 * 14 13 12 28 28 H 1.08997 * 109.50435 * 178.60460 * 16 15 14 29 29 H 1.08996 * 109.50457 * 298.69389 * 16 15 14 30 30 H 1.08997 * 109.47146 * 300.22412 * 19 17 12 31 31 H 1.09007 * 109.46985 * 60.21561 * 19 17 12 32 32 H 1.08993 * 109.47331 * 180.21433 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8267 -0.4199 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 7 2.0197 -0.6924 1.1994 13 6 1.6207 -2.1074 1.1907 14 6 2.2007 -2.8032 2.4250 15 8 1.7572 -2.1228 3.6021 16 6 2.1291 -0.7425 3.6439 17 6 1.5484 -0.0258 2.4220 18 1 0.4597 -0.0642 2.4609 19 6 2.0093 1.4331 2.4186 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5137 -0.8899 23 1 0.7081 1.1608 -3.4843 24 1 0.5332 -2.1791 1.2099 25 1 2.0012 -2.5873 0.2891 26 1 3.2894 -2.7785 2.3787 27 1 1.8604 -3.8383 2.4527 28 1 1.7369 -0.2873 4.5533 29 1 3.2158 -0.6579 3.6339 30 1 3.0978 1.4701 2.3777 31 1 1.5955 1.9428 1.5484 32 1 1.6628 1.9258 3.3270 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251634004.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:45 Heat of formation + Delta-G solvation = -40.876304 kcal Electronic energy + Delta-G solvation = -13746.918494 eV Core-core repulsion = 11514.651996 eV Total energy + Delta-G solvation = -2232.266498 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.19735 -35.90248 -32.95566 -31.76220 -29.29567 -26.82639 -25.30257 -25.25479 -22.00980 -21.08290 -18.53871 -16.42804 -15.83020 -15.57690 -14.60095 -14.57425 -14.20699 -13.69967 -12.99778 -12.85966 -12.03030 -11.64988 -11.53944 -11.31147 -11.02543 -10.96000 -10.74537 -10.64033 -10.45112 -10.20962 -9.96389 -9.72850 -8.96166 -8.81016 -8.37899 -7.17150 -6.02914 -4.07103 3.30783 3.35311 3.37883 4.28884 4.39087 4.86134 5.27779 5.38853 5.57147 5.63491 5.75779 5.83508 5.95168 6.02715 6.11722 6.31459 6.44728 6.60187 6.62695 6.73579 6.82316 6.87554 7.13695 7.46798 7.59354 7.70748 7.79724 8.09426 8.36063 8.57923 8.98005 9.57889 11.04089 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.046999 B = 0.011393 C = 0.010010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.613156 B = 2457.164855 C = 2796.540945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.209 3.791 3 H 0.047 0.953 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.526 5.526 13 C 0.026 3.974 14 C 0.061 3.939 15 O -0.395 6.395 16 C 0.071 3.929 17 C 0.040 3.960 18 H 0.043 0.957 19 C -0.141 4.141 20 H 0.027 0.973 21 H 0.009 0.991 22 H 0.088 0.912 23 H 0.261 0.739 24 H 0.033 0.967 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.213 -2.401 8.060 8.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.103 3.897 3 H 0.065 0.935 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.251 5.251 13 C -0.103 4.103 14 C -0.016 4.016 15 O -0.314 6.314 16 C -0.006 4.006 17 C -0.069 4.069 18 H 0.061 0.939 19 C -0.199 4.199 20 H 0.046 0.954 21 H 0.028 0.972 22 H 0.106 0.894 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.549 -2.346 8.054 8.531 hybrid contribution -0.542 -0.301 -1.182 1.335 sum 1.007 -2.647 6.872 7.432 Atomic orbital electron populations 1.22391 1.00961 0.99240 1.00538 1.19346 0.89703 0.95012 0.85639 0.93523 1.21107 1.30813 1.12557 0.89841 0.92031 1.24920 0.95171 0.95105 0.98972 1.69875 1.36858 1.22998 1.23523 0.86591 0.79227 0.79611 0.82151 1.20372 1.21369 1.20220 1.62629 1.59047 1.01209 1.02223 1.22630 0.98251 0.91136 0.98271 1.22750 0.98602 0.95416 0.84783 1.87871 1.79094 1.22747 1.41707 1.22679 0.99050 0.81508 0.97394 1.22203 0.97755 0.94842 0.92106 0.93914 1.21761 1.01844 0.94849 1.01397 0.95385 0.97170 0.89377 0.92928 0.94840 0.88870 0.92963 0.89558 0.89697 0.92919 0.92188 0.91439 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.27 37.16 0.31 -3.91 16 2 C 0.21 5.22 1.97 -68.86 -0.14 5.08 16 3 H 0.05 1.27 6.27 -51.93 -0.33 0.94 16 4 C -0.50 -13.66 7.90 -34.44 -0.27 -13.94 16 5 H 0.06 1.66 6.42 -52.49 -0.34 1.32 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.27 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.53 -11.40 4.56 -219.78 -1.00 -12.40 16 13 C 0.03 0.52 4.98 -3.71 -0.02 0.50 16 14 C 0.06 1.04 7.01 37.21 0.26 1.30 16 15 O -0.40 -7.05 10.83 -35.23 -0.38 -7.43 16 16 C 0.07 1.16 6.29 37.21 0.23 1.40 16 17 C 0.04 0.76 2.12 -67.60 -0.14 0.61 16 18 H 0.04 0.86 6.44 -51.93 -0.33 0.53 16 19 C -0.14 -2.41 8.88 37.16 0.33 -2.08 16 20 H 0.03 0.67 6.54 -51.93 -0.34 0.33 16 21 H 0.01 0.21 6.46 -51.93 -0.34 -0.12 16 22 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.03 0.71 6.52 -51.93 -0.34 0.37 16 25 H 0.09 1.97 6.18 -51.93 -0.32 1.65 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.29 6.38 -51.93 -0.33 0.96 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 244.74 15.07 3.69 3.69 Total: -1.00 -28.37 244.74 -6.27 -34.64 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.65 Total: -0.53 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 0.47 Total: -9.50 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.37 Total: -37.04 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.38 Total: -7.43 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.37 -6.27 -34.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251634004.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.232 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds