Wall clock time and date at job start Mon Mar 30 2020 02:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47041 * 2 1 4 4 C 1.50703 * 109.46820 * 239.99994 * 2 1 3 5 5 H 1.08000 * 119.99853 * 239.99357 * 4 2 1 6 6 C 1.37870 * 119.99946 * 60.00156 * 4 2 1 7 7 N 1.31518 * 120.00179 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00031 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46895 * 59.99371 * 8 6 4 10 10 H 1.48498 * 109.47160 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46743 * 299.99951 * 8 6 4 12 12 N 1.46900 * 109.47500 * 119.99795 * 2 1 3 13 13 C 1.47017 * 110.99765 * 63.63629 * 12 2 1 14 14 C 1.53103 * 109.25606 * 177.61039 * 13 12 2 15 15 O 1.43010 * 109.25776 * 56.84682 * 14 13 12 16 16 C 1.43015 * 113.73980 * 301.32744 * 15 14 13 17 17 C 1.47014 * 111.00019 * 300.00253 * 12 2 1 18 18 H 1.09004 * 109.50706 * 62.45483 * 17 12 2 19 19 C 1.53001 * 109.50670 * 302.32337 * 17 12 2 20 20 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47023 * 299.99404 * 1 2 3 22 22 H 1.08993 * 109.47677 * 60.00222 * 1 2 3 23 23 H 0.96995 * 119.99705 * 180.02562 * 7 6 4 24 24 H 1.09006 * 109.50736 * 297.54404 * 13 12 2 25 25 H 1.08995 * 109.50709 * 57.63009 * 13 12 2 26 26 H 1.08993 * 109.50340 * 296.90966 * 14 13 12 27 27 H 1.08999 * 109.50068 * 176.78574 * 14 13 12 28 28 H 1.08997 * 109.50435 * 178.60460 * 16 15 14 29 29 H 1.08996 * 109.50457 * 298.69389 * 16 15 14 30 30 H 1.08997 * 109.47146 * 300.22412 * 19 17 12 31 31 H 1.09007 * 109.46985 * 60.21561 * 19 17 12 32 32 H 1.08993 * 109.47331 * 180.21433 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8279 -2.5199 -4.0081 10 1 1.8267 -0.4199 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 7 2.0197 -0.6924 1.1994 13 6 1.6207 -2.1074 1.1907 14 6 2.2007 -2.8032 2.4250 15 8 1.7572 -2.1228 3.6021 16 6 2.1291 -0.7425 3.6439 17 6 1.5484 -0.0258 2.4220 18 1 0.4597 -0.0642 2.4609 19 6 2.0093 1.4331 2.4186 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5137 -0.8899 23 1 0.7081 1.1608 -3.4843 24 1 0.5332 -2.1791 1.2099 25 1 2.0012 -2.5873 0.2891 26 1 3.2894 -2.7785 2.3787 27 1 1.8604 -3.8383 2.4527 28 1 1.7369 -0.2873 4.5533 29 1 3.2158 -0.6579 3.6339 30 1 3.0978 1.4701 2.3777 31 1 1.5955 1.9428 1.5484 32 1 1.6628 1.9258 3.3270 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251634004.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:45 Heat of formation + Delta-G solvation = -60.578177 kcal Electronic energy + Delta-G solvation = -13747.772831 eV Core-core repulsion = 11514.651996 eV Total energy + Delta-G solvation = -2233.120836 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.72509 -37.53025 -34.82423 -33.35414 -31.12980 -28.31655 -27.33219 -26.84274 -23.51046 -22.84193 -20.19852 -18.35958 -17.43253 -17.10173 -16.39105 -16.14929 -15.66358 -15.35326 -14.72186 -14.60478 -13.88903 -13.17703 -13.04088 -12.95492 -12.84522 -12.69820 -12.55971 -12.28984 -12.16687 -11.97569 -11.79987 -11.23379 -10.85477 -10.53864 -10.34925 -8.91264 -8.11834 -6.22869 1.42418 1.43607 1.51102 2.41754 2.96890 3.17185 3.26696 3.95557 4.18287 4.23914 4.29350 4.39088 4.58457 4.66786 4.77929 4.78143 4.85485 4.92105 5.01226 5.01592 5.11535 5.22681 5.34485 5.54908 5.69918 5.76261 6.14787 6.22941 6.43432 6.71705 6.90319 7.46190 8.94265 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.046999 B = 0.011393 C = 0.010010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.613156 B = 2457.164855 C = 2796.540945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.020 0.980 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.534 5.534 13 C 0.026 3.974 14 C 0.069 3.931 15 O -0.402 6.402 16 C 0.074 3.926 17 C 0.036 3.964 18 H 0.029 0.971 19 C -0.135 4.135 20 H 0.023 0.977 21 H 0.023 0.977 22 H 0.061 0.939 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 -3.210 9.120 9.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.038 0.962 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.259 5.259 13 C -0.102 4.102 14 C -0.008 4.008 15 O -0.321 6.321 16 C -0.003 4.003 17 C -0.073 4.073 18 H 0.046 0.954 19 C -0.192 4.192 20 H 0.042 0.958 21 H 0.042 0.958 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.195 -3.163 9.134 9.912 hybrid contribution -0.751 -0.023 -1.467 1.648 sum 1.443 -3.186 7.667 8.427 Atomic orbital electron populations 1.22187 1.00912 0.98617 0.99874 1.19084 0.89555 0.93783 0.86832 0.96217 1.21410 1.30828 1.12620 0.91012 0.92285 1.25691 0.95354 0.95782 1.01838 1.70006 1.37762 1.24184 1.24062 0.85602 0.78759 0.78653 0.78557 1.19675 1.21121 1.19699 1.62558 1.59150 1.01972 1.02203 1.22647 0.97473 0.90520 0.99604 1.22766 0.98876 0.96238 0.82887 1.87873 1.79301 1.23354 1.41592 1.22793 0.99567 0.80748 0.97159 1.22373 0.97096 0.95974 0.91880 0.95350 1.21711 1.01807 0.93834 1.01878 0.95805 0.95759 0.91976 0.92985 0.96284 0.90371 0.92181 0.86804 0.86533 0.92093 0.92015 0.94256 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.82 8.27 71.98 0.60 -7.22 16 2 C 0.21 10.90 1.97 44.17 0.09 10.98 16 3 H 0.02 1.12 6.27 -2.39 -0.01 1.10 16 4 C -0.52 -28.51 7.90 25.60 0.20 -28.31 16 5 H 0.06 3.19 6.42 -2.91 -0.02 3.17 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -52.97 11.32 21.45 0.24 -52.73 16 8 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 N -0.53 -22.94 4.56 -849.26 -3.87 -26.81 16 13 C 0.03 1.03 4.98 86.32 0.43 1.46 16 14 C 0.07 2.18 7.01 72.02 0.50 2.68 16 15 O -0.40 -13.14 10.83 -148.98 -1.61 -14.76 16 16 C 0.07 2.20 6.29 72.01 0.45 2.66 16 17 C 0.04 1.29 2.12 44.93 0.10 1.39 16 18 H 0.03 1.11 6.44 -2.39 -0.02 1.10 16 19 C -0.13 -4.43 8.88 71.98 0.64 -3.79 16 20 H 0.02 1.15 6.54 -2.39 -0.02 1.14 16 21 H 0.02 1.09 6.46 -2.39 -0.02 1.07 16 22 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 23 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 24 H 0.02 0.80 6.52 -2.38 -0.02 0.78 16 25 H 0.08 3.30 6.18 -2.39 -0.01 3.28 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 28 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.04 1.50 6.38 -2.38 -0.02 1.48 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -60.39 244.74 1.34 -59.06 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 1.09 Total: 8.71 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 3.46 Total: -19.04 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -3.63 Total: -79.54 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.61 Total: -14.76 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -60.39 1.34 -59.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251634004.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.521 kcal (2) G-P(sol) polarization free energy of solvation -60.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds