Wall clock time and date at job start Mon Mar 30 2020 02:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47228 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46793 * 120.00131 * 8 6 4 11 11 H 1.48500 * 109.47000 * 240.00224 * 8 6 4 12 12 N 1.46904 * 109.47015 * 120.00068 * 2 1 3 13 13 C 1.47014 * 111.00176 * 176.04598 * 12 2 1 14 14 C 1.53101 * 109.25747 * 177.60883 * 13 12 2 15 15 O 1.43010 * 109.25678 * 56.84835 * 14 13 12 16 16 C 1.43014 * 113.74180 * 301.32588 * 15 14 13 17 17 H 1.08998 * 109.50771 * 298.69853 * 16 15 14 18 18 C 1.52996 * 109.50399 * 178.60759 * 16 15 14 19 19 C 1.47019 * 110.99830 * 52.41201 * 12 2 1 20 20 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 22 22 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 23 23 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.50748 * 297.54452 * 13 12 2 25 25 H 1.09005 * 109.50377 * 57.63224 * 13 12 2 26 26 H 1.09000 * 109.50267 * 176.78752 * 14 13 12 27 27 H 1.08996 * 109.50227 * 296.91391 * 14 13 12 28 28 H 1.08995 * 109.47527 * 60.00507 * 18 16 15 29 29 H 1.09002 * 109.47041 * 180.02562 * 18 16 15 30 30 H 1.08999 * 109.47498 * 300.00150 * 18 16 15 31 31 H 1.09001 * 109.50717 * 302.32361 * 19 12 2 32 32 H 1.08999 * 109.50696 * 62.46096 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1475 -2.2863 -3.6038 10 1 1.1679 -1.5866 -4.8165 11 1 3.1475 -0.1857 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 3.4862 -0.7947 1.1871 14 6 3.9564 -1.4677 2.4794 15 8 3.3257 -2.7453 2.6023 16 6 1.8970 -2.6829 2.6184 17 1 1.5678 -2.0964 3.4761 18 6 1.3250 -4.0985 2.7175 19 6 1.4059 -2.0223 1.3275 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7097 1.1618 -3.4844 24 1 3.8024 -1.3902 0.3307 25 1 3.9199 0.2029 1.1168 26 1 5.0383 -1.5971 2.4495 27 1 3.6871 -0.8452 3.3327 28 1 1.6780 -4.5697 3.6347 29 1 0.2361 -4.0504 2.7292 30 1 1.6532 -4.6840 1.8587 31 1 0.3211 -1.9209 1.3604 32 1 1.6889 -2.6375 0.4733 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251711666.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:14 Heat of formation + Delta-G solvation = -45.549857 kcal Electronic energy + Delta-G solvation = -13647.126784 eV Core-core repulsion = 11414.657625 eV Total energy + Delta-G solvation = -2232.469159 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.03862 -35.73004 -32.51566 -32.29312 -29.55201 -27.10219 -25.54471 -24.57934 -22.05534 -20.38203 -19.27329 -16.35995 -15.86107 -15.63133 -14.61878 -14.29634 -14.20853 -13.45089 -13.16723 -12.54154 -12.16191 -12.00988 -11.59600 -11.28003 -11.12287 -10.86930 -10.80405 -10.51266 -10.39020 -10.18471 -9.82762 -9.63063 -9.28169 -8.88579 -8.41699 -7.19334 -6.01363 -4.14269 3.24469 3.33080 3.37334 4.21982 4.38320 4.94375 5.23307 5.39517 5.53175 5.67331 5.76139 5.84917 5.93523 6.02961 6.14349 6.25177 6.38846 6.56753 6.70455 6.82530 6.88982 6.99483 7.11834 7.54193 7.67351 7.69401 7.91825 8.10092 8.29352 8.38607 8.94999 9.53525 10.98758 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040439 B = 0.011106 C = 0.010758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.242734 B = 2520.602178 C = 2602.154123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.205 3.795 3 H 0.041 0.959 4 C -0.542 4.542 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.888 3.112 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.537 5.537 13 C 0.026 3.974 14 C 0.065 3.935 15 O -0.391 6.391 16 C 0.086 3.914 17 H 0.056 0.944 18 C -0.142 4.142 19 C 0.029 3.971 20 H 0.028 0.972 21 H 0.015 0.985 22 H 0.085 0.915 23 H 0.261 0.739 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.537 -4.822 7.693 9.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.099 3.901 3 H 0.059 0.941 4 C -0.581 4.581 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.716 3.284 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.262 5.262 13 C -0.103 4.103 14 C -0.012 4.012 15 O -0.311 6.311 16 C 0.028 3.972 17 H 0.074 0.926 18 C -0.199 4.199 19 C -0.099 4.099 20 H 0.047 0.953 21 H 0.034 0.966 22 H 0.104 0.896 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.413 -4.583 7.974 9.305 hybrid contribution 0.414 -0.589 -1.792 1.931 sum 1.827 -5.172 6.182 8.265 Atomic orbital electron populations 1.21863 0.97793 0.99173 1.00429 1.19302 0.92261 0.94191 0.84328 0.94150 1.21752 1.31925 1.12750 0.91679 0.92467 1.24915 0.94798 0.94863 0.98908 1.69890 1.36491 1.22781 1.23372 0.86603 0.78729 0.79794 0.83296 1.19893 1.20973 1.20949 1.62775 1.04422 1.16801 1.42207 1.22538 0.90711 1.00584 0.96500 1.22668 0.96571 0.84564 0.97388 1.87872 1.19241 1.29428 1.94541 1.22213 0.80937 0.96291 0.97729 0.92561 1.21721 1.00379 0.95553 1.02271 1.22633 0.99967 0.91359 0.95970 0.95303 0.96610 0.89642 0.92937 0.93205 0.90869 0.89600 0.93371 0.92384 0.91263 0.92057 0.90334 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.48 37.16 0.32 -2.95 16 2 C 0.21 5.19 2.50 -68.86 -0.17 5.02 16 3 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.54 -14.72 7.13 -34.44 -0.25 -14.97 16 5 H 0.06 1.59 5.79 -52.48 -0.30 1.28 16 6 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 N -0.54 -11.81 4.78 -227.71 -1.09 -12.90 16 13 C 0.03 0.52 5.25 -3.71 -0.02 0.50 16 14 C 0.07 1.11 7.01 37.21 0.26 1.37 16 15 O -0.39 -7.20 10.47 -35.23 -0.37 -7.56 16 16 C 0.09 1.48 3.43 -26.68 -0.09 1.39 16 17 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.14 -1.99 9.57 37.16 0.36 -1.63 16 19 C 0.03 0.59 4.17 -3.71 -0.02 0.58 16 20 H 0.03 0.66 6.27 -51.93 -0.33 0.34 16 21 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.05 1.12 6.34 -51.93 -0.33 0.79 16 25 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.56 6.06 -51.93 -0.31 1.24 16 32 H 0.04 1.01 7.03 -51.93 -0.37 0.64 16 LS Contribution 249.42 15.07 3.76 3.76 Total: -1.00 -28.57 249.42 -6.69 -35.27 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.89 Total: -1.46 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 0.29 Total: -8.94 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.46 Total: -37.37 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.37 Total: -7.56 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.57 -6.69 -35.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251711666.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.283 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds