Wall clock time and date at job start Mon Mar 30 2020 02:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47228 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46793 * 120.00131 * 8 6 4 11 11 H 1.48500 * 109.47000 * 240.00224 * 8 6 4 12 12 N 1.46904 * 109.47015 * 120.00068 * 2 1 3 13 13 C 1.47014 * 111.00176 * 176.04598 * 12 2 1 14 14 C 1.53101 * 109.25747 * 177.60883 * 13 12 2 15 15 O 1.43010 * 109.25678 * 56.84835 * 14 13 12 16 16 C 1.43014 * 113.74180 * 301.32588 * 15 14 13 17 17 H 1.08998 * 109.50771 * 298.69853 * 16 15 14 18 18 C 1.52996 * 109.50399 * 178.60759 * 16 15 14 19 19 C 1.47019 * 110.99830 * 52.41201 * 12 2 1 20 20 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 22 22 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 23 23 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.50748 * 297.54452 * 13 12 2 25 25 H 1.09005 * 109.50377 * 57.63224 * 13 12 2 26 26 H 1.09000 * 109.50267 * 176.78752 * 14 13 12 27 27 H 1.08996 * 109.50227 * 296.91391 * 14 13 12 28 28 H 1.08995 * 109.47527 * 60.00507 * 18 16 15 29 29 H 1.09002 * 109.47041 * 180.02562 * 18 16 15 30 30 H 1.08999 * 109.47498 * 300.00150 * 18 16 15 31 31 H 1.09001 * 109.50717 * 302.32361 * 19 12 2 32 32 H 1.08999 * 109.50696 * 62.46096 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1475 -2.2863 -3.6038 10 1 1.1679 -1.5866 -4.8165 11 1 3.1475 -0.1857 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 3.4862 -0.7947 1.1871 14 6 3.9564 -1.4677 2.4794 15 8 3.3257 -2.7453 2.6023 16 6 1.8970 -2.6829 2.6184 17 1 1.5678 -2.0964 3.4761 18 6 1.3250 -4.0985 2.7175 19 6 1.4059 -2.0223 1.3275 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7097 1.1618 -3.4844 24 1 3.8024 -1.3902 0.3307 25 1 3.9199 0.2029 1.1168 26 1 5.0383 -1.5971 2.4495 27 1 3.6871 -0.8452 3.3327 28 1 1.6780 -4.5697 3.6347 29 1 0.2361 -4.0504 2.7292 30 1 1.6532 -4.6840 1.8587 31 1 0.3211 -1.9209 1.3604 32 1 1.6889 -2.6375 0.4733 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251711666.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:13 Heat of formation + Delta-G solvation = -65.259209 kcal Electronic energy + Delta-G solvation = -13647.981445 eV Core-core repulsion = 11414.657625 eV Total energy + Delta-G solvation = -2233.323820 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.58874 -37.47009 -34.51093 -33.65476 -31.39826 -28.61405 -27.48005 -26.34931 -23.52818 -22.05608 -21.06723 -18.38136 -17.38977 -17.21822 -16.46949 -15.93053 -15.62256 -15.23561 -14.96431 -14.33497 -13.60266 -13.39759 -13.14983 -13.03848 -12.84230 -12.68589 -12.55710 -12.21970 -12.17115 -11.96852 -11.68602 -11.28559 -11.18894 -10.53933 -10.40529 -9.06269 -8.09830 -6.31694 1.33015 1.36028 1.46163 2.36356 2.88185 3.10072 3.29032 3.99953 4.20617 4.27400 4.30491 4.41230 4.61274 4.66379 4.78792 4.85875 4.93179 5.00186 5.06273 5.07785 5.16027 5.22622 5.31927 5.47780 5.64578 5.92336 6.10218 6.28777 6.30138 6.51727 6.86348 7.39232 8.87125 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040439 B = 0.011106 C = 0.010758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.242734 B = 2520.602178 C = 2602.154123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.207 3.793 3 H 0.009 0.991 4 C -0.551 4.551 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.537 5.537 13 C 0.024 3.976 14 C 0.072 3.928 15 O -0.401 6.401 16 C 0.088 3.912 17 H 0.069 0.931 18 C -0.137 4.137 19 C 0.032 3.968 20 H 0.033 0.967 21 H 0.032 0.968 22 H 0.061 0.939 23 H 0.263 0.737 24 H 0.022 0.978 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 -5.835 8.626 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.100 3.900 3 H 0.027 0.973 4 C -0.590 4.590 5 H 0.064 0.936 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.775 3.225 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.204 1.204 12 N -0.262 5.262 13 C -0.104 4.104 14 C -0.005 4.005 15 O -0.321 6.321 16 C 0.030 3.970 17 H 0.087 0.913 18 C -0.194 4.194 19 C -0.096 4.096 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.040 0.960 25 H 0.091 0.909 26 H 0.132 0.868 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 1.634 -5.602 8.919 10.659 hybrid contribution 0.355 -0.244 -2.055 2.100 sum 1.989 -5.846 6.864 9.233 Atomic orbital electron populations 1.21682 0.97061 0.99310 1.00017 1.19120 0.92832 0.92771 0.85278 0.97323 1.21892 1.31840 1.12441 0.92801 0.93632 1.25616 0.95050 0.95575 1.01571 1.69996 1.37180 1.23740 1.24087 0.85654 0.78277 0.78639 0.79956 1.20015 1.20314 1.20377 1.62726 1.05569 1.17800 1.40066 1.22608 0.89653 1.00538 0.97641 1.22733 0.98019 0.84097 0.95659 1.87877 1.19836 1.30046 1.94340 1.22326 0.80529 0.98119 0.96000 0.91319 1.21731 1.01456 0.93359 1.02864 1.22688 1.00106 0.89991 0.96849 0.94763 0.94933 0.92037 0.92736 0.95990 0.90945 0.86840 0.91766 0.90401 0.89402 0.92954 0.90071 0.96569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 8.48 71.98 0.61 -5.36 16 2 C 0.21 10.64 2.50 44.17 0.11 10.75 16 3 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 4 C -0.55 -30.43 7.13 25.60 0.18 -30.24 16 5 H 0.05 2.59 5.79 -2.91 -0.02 2.57 16 6 C 0.02 1.21 5.30 84.66 0.45 1.66 16 7 N -0.91 -52.12 11.32 21.45 0.24 -51.88 16 8 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 N -0.54 -23.52 4.78 -874.35 -4.18 -27.71 16 13 C 0.02 0.98 5.25 86.32 0.45 1.44 16 14 C 0.07 2.28 7.01 72.02 0.50 2.78 16 15 O -0.40 -13.84 10.47 -148.98 -1.56 -15.40 16 16 C 0.09 2.83 3.43 30.63 0.10 2.94 16 17 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 18 C -0.14 -3.47 9.57 71.98 0.69 -2.78 16 19 C 0.03 1.28 4.17 86.31 0.36 1.64 16 20 H 0.03 1.58 6.27 -2.38 -0.01 1.56 16 21 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 23 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 24 H 0.02 1.00 6.34 -2.39 -0.02 0.98 16 25 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 26 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 3.13 6.06 -2.39 -0.01 3.11 16 32 H 0.02 0.73 7.03 -2.39 -0.02 0.71 16 Total: -1.00 -60.67 249.42 1.07 -59.59 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.08 Total: 6.51 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 3.46 Total: -17.18 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -3.94 Total: -79.58 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -1.56 Total: -15.40 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -60.67 1.07 -59.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251711666.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.667 kcal (2) G-P(sol) polarization free energy of solvation -60.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds