Wall clock time and date at job start Mon Mar 30 2020 02:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47299 * 2 1 4 4 C 1.50704 * 109.46924 * 240.00052 * 2 1 3 5 5 H 1.08005 * 120.00016 * 245.46382 * 4 2 1 6 6 C 1.37874 * 120.00203 * 65.46025 * 4 2 1 7 7 N 1.31517 * 119.99923 * 9.55061 * 6 4 2 8 8 Si 1.86796 * 120.00049 * 189.55120 * 6 4 2 9 9 H 1.48499 * 109.47054 * 84.99770 * 8 6 4 10 10 H 1.48502 * 109.47352 * 204.99453 * 8 6 4 11 11 H 1.48497 * 109.47252 * 324.99582 * 8 6 4 12 12 N 1.46900 * 109.46850 * 120.00290 * 2 1 3 13 13 C 1.46900 * 110.99835 * 274.99550 * 12 2 1 14 14 H 1.09001 * 110.45625 * 36.14894 * 13 12 2 15 15 C 1.54515 * 110.51318 * 273.55207 * 13 12 2 16 16 C 1.54481 * 104.06187 * 241.21943 * 15 13 12 17 17 O 1.44429 * 104.89899 * 335.96242 * 16 15 13 18 18 C 1.44694 * 105.13877 * 40.49819 * 17 16 15 19 19 H 1.09004 * 110.44853 * 78.40699 * 18 17 16 20 20 C 1.52996 * 110.35348 * 200.67613 * 18 17 16 21 21 H 1.08995 * 109.47425 * 183.67871 * 1 2 3 22 22 H 1.08994 * 109.46701 * 303.68162 * 1 2 3 23 23 H 1.09003 * 109.46506 * 63.67861 * 1 2 3 24 24 H 0.96999 * 119.99957 * 179.97438 * 7 6 4 25 25 H 1.00893 * 111.00309 * 38.95142 * 12 2 1 26 26 H 1.08994 * 110.51378 * 122.56986 * 15 13 12 27 27 H 1.09000 * 110.50816 * 359.85561 * 15 13 12 28 28 H 1.08994 * 110.37216 * 94.84669 * 16 15 13 29 29 H 1.08997 * 110.37462 * 217.08048 * 16 15 13 30 30 H 1.09007 * 109.46845 * 175.41564 * 20 18 17 31 31 H 1.09001 * 109.47417 * 295.41210 * 20 18 17 32 32 H 1.08995 * 109.47368 * 55.41606 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6372 -1.1339 6 6 1.7946 -0.1774 -2.4796 7 7 1.2992 1.0355 -2.5936 8 14 2.1761 -1.1780 -4.0101 9 1 1.0242 -2.0610 -4.3241 10 1 2.4228 -0.2614 -5.1522 11 1 3.3846 -2.0072 -3.7710 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2521 0.9280 2.3174 15 6 3.4318 0.9753 2.3659 16 6 4.0797 0.5507 3.7024 17 8 2.9728 0.1605 4.5442 18 6 2.0748 -0.5677 3.6742 19 1 2.4393 -1.5824 3.5139 20 6 0.6652 -0.5968 4.2685 21 1 -0.3634 -1.0255 0.0659 22 1 -0.3632 0.5699 0.8551 23 1 -0.3632 0.4557 -0.9212 24 1 1.1322 1.4107 -3.4724 25 1 1.4496 -1.4979 1.4100 26 1 3.2684 2.0527 2.3458 27 1 4.0532 0.6665 1.5252 28 1 4.7534 -0.2918 3.5468 29 1 4.6172 1.3884 4.1466 30 1 -0.0156 -1.0767 3.5654 31 1 0.6765 -1.1572 5.2033 32 1 0.3306 0.4227 4.4601 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252743363.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:41 Heat of formation + Delta-G solvation = -55.174326 kcal Electronic energy + Delta-G solvation = -13272.778154 eV Core-core repulsion = 11039.891647 eV Total energy + Delta-G solvation = -2232.886507 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.24012 -35.63963 -32.69902 -31.24440 -30.46436 -27.56531 -25.15331 -24.48933 -21.92644 -20.50236 -19.56535 -16.54881 -15.94057 -15.33152 -15.20608 -14.66432 -13.70966 -13.45606 -12.88901 -12.63840 -12.26652 -12.03305 -11.77942 -11.43837 -11.31018 -10.91019 -10.79432 -10.71728 -10.40737 -10.26024 -10.16398 -9.75551 -9.45538 -9.04361 -8.34001 -7.33205 -6.01854 -4.01452 3.32297 3.38587 3.42095 4.16747 4.43701 4.97227 5.07799 5.29405 5.31235 5.42538 5.46945 5.63601 5.74105 5.77839 6.08726 6.12288 6.23504 6.35568 6.43022 6.58671 6.63000 6.71813 7.00228 7.08551 7.36499 7.57254 7.87374 8.19917 8.49743 8.58871 9.04876 9.62221 11.07459 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053940 B = 0.008741 C = 0.008267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.972174 B = 3202.345038 C = 3386.210014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.210 3.790 3 H 0.042 0.958 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.673 5.673 13 C 0.061 3.939 14 H 0.049 0.951 15 C -0.145 4.145 16 C 0.049 3.951 17 O -0.381 6.381 18 C 0.068 3.932 19 H 0.074 0.926 20 C -0.145 4.145 21 H 0.030 0.970 22 H 0.010 0.990 23 H 0.071 0.929 24 H 0.260 0.740 25 H 0.325 0.675 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -1.493 9.679 9.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.102 3.898 3 H 0.060 0.940 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.304 5.304 13 C -0.050 4.050 14 H 0.067 0.933 15 C -0.184 4.184 16 C -0.028 4.028 17 O -0.300 6.300 18 C 0.010 3.990 19 H 0.092 0.908 20 C -0.203 4.203 21 H 0.049 0.951 22 H 0.029 0.971 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.142 0.858 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.446 -1.224 9.607 9.792 hybrid contribution -0.810 -0.333 -1.001 1.330 sum 0.637 -1.556 8.606 8.769 Atomic orbital electron populations 1.22387 1.01119 0.98516 1.00231 1.19229 0.89088 0.95066 0.86431 0.94039 1.21088 1.34666 1.08223 0.89672 0.91984 1.24946 0.95624 0.94745 0.99015 1.69967 1.45703 1.14029 1.23699 0.86587 0.78674 0.80024 0.82561 1.20750 1.21464 1.19931 1.60951 1.57871 1.08585 1.02982 1.22809 0.96728 0.94807 0.90657 0.93341 1.22961 0.97484 0.99795 0.98127 1.23348 0.89656 0.99165 0.90606 1.89100 1.33296 1.74161 1.33461 1.23202 0.90638 0.95905 0.89259 0.90808 1.21800 0.94778 1.02599 1.01095 0.95136 0.97145 0.90997 0.93042 0.85797 0.91679 0.88944 0.92445 0.89893 0.91218 0.92231 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 9.04 37.16 0.34 -3.47 16 2 C 0.21 5.17 2.30 -68.86 -0.16 5.01 16 3 H 0.04 1.15 7.68 -51.93 -0.40 0.75 16 4 C -0.50 -13.63 8.76 -34.44 -0.30 -13.93 16 5 H 0.06 1.71 7.83 -52.48 -0.41 1.30 16 6 C 0.06 1.60 5.17 -17.82 -0.09 1.51 16 7 N -0.89 -25.68 12.16 55.43 0.67 -25.00 16 8 Si 0.89 21.38 29.55 -169.99 -5.02 16.36 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.67 -13.97 5.93 -99.30 -0.59 -14.56 16 13 C 0.06 1.11 2.75 -66.14 -0.18 0.93 16 14 H 0.05 0.94 6.97 -51.93 -0.36 0.57 16 15 C -0.15 -2.50 6.70 -25.16 -0.17 -2.67 16 16 C 0.05 0.73 7.62 37.93 0.29 1.02 16 17 O -0.38 -6.28 11.37 -35.23 -0.40 -6.68 16 18 C 0.07 1.07 3.40 -25.96 -0.09 0.99 16 19 H 0.07 1.16 8.03 -51.93 -0.42 0.74 16 20 C -0.15 -1.98 9.52 37.16 0.35 -1.62 16 21 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 22 H 0.01 0.21 7.50 -51.93 -0.39 -0.18 16 23 H 0.07 1.86 6.83 -51.93 -0.35 1.50 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.32 6.32 8.15 -39.30 -0.32 6.00 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.09 1.75 7.97 -51.93 -0.41 1.34 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 261.77 15.07 3.94 3.94 Total: -1.00 -28.52 261.77 -6.56 -35.09 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.16 Total: 3.08 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -0.01 Total: -12.23 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.08 Total: -39.56 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.40 Total: -6.68 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.52 -6.56 -35.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252743363.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.088 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds