Wall clock time and date at job start Mon Mar 30 2020 02:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47299 * 2 1 4 4 C 1.50704 * 109.46924 * 240.00052 * 2 1 3 5 5 H 1.08005 * 120.00016 * 245.46382 * 4 2 1 6 6 C 1.37874 * 120.00203 * 65.46025 * 4 2 1 7 7 N 1.31517 * 119.99923 * 9.55061 * 6 4 2 8 8 Si 1.86796 * 120.00049 * 189.55120 * 6 4 2 9 9 H 1.48499 * 109.47054 * 84.99770 * 8 6 4 10 10 H 1.48502 * 109.47352 * 204.99453 * 8 6 4 11 11 H 1.48497 * 109.47252 * 324.99582 * 8 6 4 12 12 N 1.46900 * 109.46850 * 120.00290 * 2 1 3 13 13 C 1.46900 * 110.99835 * 274.99550 * 12 2 1 14 14 H 1.09001 * 110.45625 * 36.14894 * 13 12 2 15 15 C 1.54515 * 110.51318 * 273.55207 * 13 12 2 16 16 C 1.54481 * 104.06187 * 241.21943 * 15 13 12 17 17 O 1.44429 * 104.89899 * 335.96242 * 16 15 13 18 18 C 1.44694 * 105.13877 * 40.49819 * 17 16 15 19 19 H 1.09004 * 110.44853 * 78.40699 * 18 17 16 20 20 C 1.52996 * 110.35348 * 200.67613 * 18 17 16 21 21 H 1.08995 * 109.47425 * 183.67871 * 1 2 3 22 22 H 1.08994 * 109.46701 * 303.68162 * 1 2 3 23 23 H 1.09003 * 109.46506 * 63.67861 * 1 2 3 24 24 H 0.96999 * 119.99957 * 179.97438 * 7 6 4 25 25 H 1.00893 * 111.00309 * 38.95142 * 12 2 1 26 26 H 1.08994 * 110.51378 * 122.56986 * 15 13 12 27 27 H 1.09000 * 110.50816 * 359.85561 * 15 13 12 28 28 H 1.08994 * 110.37216 * 94.84669 * 16 15 13 29 29 H 1.08997 * 110.37462 * 217.08048 * 16 15 13 30 30 H 1.09007 * 109.46845 * 175.41564 * 20 18 17 31 31 H 1.09001 * 109.47417 * 295.41210 * 20 18 17 32 32 H 1.08995 * 109.47368 * 55.41606 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6372 -1.1339 6 6 1.7946 -0.1774 -2.4796 7 7 1.2992 1.0355 -2.5936 8 14 2.1761 -1.1780 -4.0101 9 1 1.0242 -2.0610 -4.3241 10 1 2.4228 -0.2614 -5.1522 11 1 3.3846 -2.0072 -3.7710 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2521 0.9280 2.3174 15 6 3.4318 0.9753 2.3659 16 6 4.0797 0.5507 3.7024 17 8 2.9728 0.1605 4.5442 18 6 2.0748 -0.5677 3.6742 19 1 2.4393 -1.5824 3.5139 20 6 0.6652 -0.5968 4.2685 21 1 -0.3634 -1.0255 0.0659 22 1 -0.3632 0.5699 0.8551 23 1 -0.3632 0.4557 -0.9212 24 1 1.1322 1.4107 -3.4724 25 1 1.4496 -1.4979 1.4100 26 1 3.2684 2.0527 2.3458 27 1 4.0532 0.6665 1.5252 28 1 4.7534 -0.2918 3.5468 29 1 4.6172 1.3884 4.1466 30 1 -0.0156 -1.0767 3.5654 31 1 0.6765 -1.1572 5.2033 32 1 0.3306 0.4227 4.4601 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252743363.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:41 Heat of formation + Delta-G solvation = -74.673138 kcal Electronic energy + Delta-G solvation = -13273.623686 eV Core-core repulsion = 11039.891647 eV Total energy + Delta-G solvation = -2233.732039 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.58315 -37.38595 -34.58239 -32.50999 -32.09720 -29.21302 -27.20399 -25.86227 -23.34167 -22.12186 -21.17025 -18.46464 -17.43868 -16.82299 -16.61508 -16.39520 -15.29026 -15.02595 -14.47653 -14.30247 -13.83772 -13.38899 -13.13635 -13.12080 -12.96425 -12.72037 -12.53921 -12.27116 -12.10026 -11.97128 -11.75806 -11.39939 -11.06968 -10.71097 -10.45552 -9.04893 -8.12545 -6.19506 1.43221 1.43843 1.53757 2.43937 2.92978 3.17874 3.51880 3.76171 3.92648 4.10850 4.24037 4.39007 4.48769 4.68415 4.69341 4.78199 4.81952 4.92951 5.00449 5.04414 5.07720 5.15934 5.22953 5.42573 5.63765 5.73583 5.87112 6.22881 6.63570 6.82872 6.94020 7.48762 8.95695 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053940 B = 0.008741 C = 0.008267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.972174 B = 3202.345038 C = 3386.210014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.217 3.783 3 H 0.005 0.995 4 C -0.515 4.515 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.924 5.924 8 Si 0.957 3.043 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.270 1.270 12 N -0.673 5.673 13 C 0.057 3.943 14 H 0.036 0.964 15 C -0.148 4.148 16 C 0.055 3.945 17 O -0.388 6.388 18 C 0.074 3.926 19 H 0.078 0.922 20 C -0.142 4.142 21 H 0.043 0.957 22 H 0.028 0.972 23 H 0.042 0.958 24 H 0.261 0.739 25 H 0.334 0.666 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 -2.446 10.478 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.108 3.892 3 H 0.023 0.977 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.195 1.195 12 N -0.304 5.304 13 C -0.054 4.054 14 H 0.054 0.946 15 C -0.187 4.187 16 C -0.022 4.022 17 O -0.307 6.307 18 C 0.016 3.984 19 H 0.096 0.904 20 C -0.200 4.200 21 H 0.062 0.938 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.152 0.848 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.126 0.874 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.554 -2.188 10.424 10.764 hybrid contribution -0.816 -0.006 -1.213 1.462 sum 0.738 -2.195 9.211 9.497 Atomic orbital electron populations 1.22202 1.00058 0.99279 0.99488 1.18948 0.89754 0.93081 0.87425 0.97683 1.21396 1.34731 1.08126 0.91063 0.92596 1.25705 0.95567 0.95598 1.01929 1.70085 1.46618 1.15352 1.24307 0.85593 0.78690 0.78584 0.78891 1.19956 1.21265 1.19460 1.60798 1.57703 1.09066 1.02859 1.22878 0.96767 0.94632 0.91083 0.94553 1.22948 0.96974 0.99819 0.98936 1.23415 0.89290 1.00427 0.89064 1.89100 1.33708 1.74253 1.33686 1.23186 0.91984 0.95418 0.87842 0.90383 1.21804 0.93250 1.02918 1.01990 0.93832 0.95321 0.93871 0.93046 0.84824 0.91601 0.91126 0.91579 0.87363 0.90620 0.90390 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.00 9.04 71.98 0.65 -6.35 16 2 C 0.22 10.80 2.30 44.17 0.10 10.90 16 3 H 0.01 0.29 7.68 -2.39 -0.02 0.28 16 4 C -0.51 -28.31 8.76 25.60 0.22 -28.09 16 5 H 0.06 3.08 7.83 -2.91 -0.02 3.06 16 6 C 0.01 0.58 5.17 84.65 0.44 1.02 16 7 N -0.92 -53.70 12.16 21.45 0.26 -53.44 16 8 Si 0.96 43.79 29.55 68.60 2.03 45.81 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 N -0.67 -27.67 5.93 -468.09 -2.78 -30.44 16 13 C 0.06 2.04 2.75 45.93 0.13 2.17 16 14 H 0.04 1.39 6.97 -2.39 -0.02 1.38 16 15 C -0.15 -5.05 6.70 31.61 0.21 -4.84 16 16 C 0.05 1.52 7.62 72.49 0.55 2.07 16 17 O -0.39 -11.88 11.37 -148.98 -1.69 -13.57 16 18 C 0.07 2.18 3.40 31.09 0.11 2.29 16 19 H 0.08 2.27 8.03 -2.39 -0.02 2.25 16 20 C -0.14 -3.52 9.52 71.98 0.69 -2.84 16 21 H 0.04 1.86 8.07 -2.39 -0.02 1.84 16 22 H 0.03 1.18 7.50 -2.39 -0.02 1.16 16 23 H 0.04 2.24 6.83 -2.39 -0.02 2.22 16 24 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 25 H 0.33 12.59 8.15 -89.70 -0.73 11.86 16 26 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.07 2.71 7.97 -2.39 -0.02 2.69 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -60.04 261.77 1.27 -58.78 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.35 Total: 16.54 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 3.10 Total: -23.68 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -2.52 Total: -83.88 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -1.69 Total: -13.57 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -60.04 1.27 -58.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252743363.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.897 kcal (2) G-P(sol) polarization free energy of solvation -60.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds