Wall clock time and date at job start Mon Mar 30 2020 02:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46857 * 2 1 4 4 C 1.50705 * 109.46760 * 240.00446 * 2 1 3 5 5 H 1.08001 * 120.00099 * 245.59474 * 4 2 1 6 6 C 1.37876 * 119.99836 * 65.60031 * 4 2 1 7 7 N 1.31517 * 119.99950 * 195.68443 * 6 4 2 8 8 Si 1.86798 * 120.00195 * 15.68035 * 6 4 2 9 9 H 1.48503 * 109.46851 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.47211 * 300.00082 * 8 6 4 11 11 H 1.48504 * 109.47105 * 60.00467 * 8 6 4 12 12 N 1.46897 * 109.47018 * 120.00708 * 2 1 3 13 13 C 1.46897 * 110.99724 * 274.99447 * 12 2 1 14 14 H 1.09005 * 110.44012 * 318.81220 * 13 12 2 15 15 C 1.54813 * 110.48810 * 81.35772 * 13 12 2 16 16 C 1.54994 * 102.09603 * 139.55295 * 15 13 12 17 17 O 1.44385 * 103.49015 * 322.98002 * 16 15 13 18 18 C 1.43742 * 106.97216 * 40.05667 * 17 16 15 19 19 H 1.09000 * 109.87937 * 92.91679 * 18 17 16 20 20 C 1.53005 * 109.87705 * 214.06089 * 18 17 16 21 21 H 1.09003 * 109.47416 * 187.38255 * 1 2 3 22 22 H 1.08997 * 109.47231 * 307.37808 * 1 2 3 23 23 H 1.09003 * 109.47539 * 67.37919 * 1 2 3 24 24 H 0.97001 * 119.99676 * 354.88264 * 7 6 4 25 25 H 1.00904 * 110.99517 * 151.04409 * 12 2 1 26 26 H 1.08999 * 110.90909 * 257.75422 * 15 13 12 27 27 H 1.09002 * 110.90663 * 21.32084 * 15 13 12 28 28 H 1.09000 * 110.61631 * 81.47830 * 16 15 13 29 29 H 1.08994 * 110.61957 * 204.31703 * 16 15 13 30 30 H 1.08994 * 109.47486 * 183.73290 * 20 18 17 31 31 H 1.09001 * 109.47122 * 303.73282 * 20 18 17 32 32 H 1.08998 * 109.46852 * 63.72788 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5766 -1.6382 -1.1342 6 6 1.7970 -0.1757 -2.4795 7 7 1.9504 -0.9199 -3.5529 8 14 1.2601 1.6056 -2.6469 9 1 1.0749 1.9338 -4.0833 10 1 -0.0210 1.8066 -1.9234 11 1 2.3005 2.4927 -2.0672 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2224 2.3468 14 1 2.4688 1.1939 2.0383 15 6 0.6849 0.3759 2.9947 16 6 1.0257 0.3733 4.5067 17 8 2.1034 -0.5823 4.6074 18 6 2.9544 -0.3767 3.4673 19 1 3.7563 0.3157 3.7234 20 6 3.5433 -1.7128 3.0101 21 1 -0.3634 -1.0192 0.1320 22 1 -0.3633 0.6238 0.8166 23 1 -0.3634 0.3953 -0.9486 24 1 2.3000 -1.8211 -3.4723 25 1 2.9173 -1.1206 1.0285 26 1 0.2218 1.3182 2.7019 27 1 0.0428 -0.4670 2.7387 28 1 1.3574 1.3610 4.8270 29 1 0.1662 0.0494 5.0933 30 1 4.2383 -1.5414 2.1882 31 1 4.0716 -2.1804 3.8410 32 1 2.7396 -2.3687 2.6755 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252743364.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:43 Heat of formation + Delta-G solvation = -44.689230 kcal Electronic energy + Delta-G solvation = -13454.485555 eV Core-core repulsion = 11222.053716 eV Total energy + Delta-G solvation = -2232.431839 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.47869 -35.79282 -32.83895 -31.41347 -30.59985 -27.85386 -25.37497 -24.39079 -21.82816 -20.31349 -19.25859 -17.59606 -16.25248 -15.49911 -15.32813 -14.83490 -14.00256 -13.51245 -13.08441 -12.62991 -12.28607 -11.99994 -11.92840 -11.44097 -11.37693 -11.03609 -10.95742 -10.60923 -10.38870 -10.30189 -9.94228 -9.60313 -9.47109 -8.87734 -8.28167 -7.57948 -6.48445 -4.10735 3.35547 3.38261 3.57029 4.06993 4.45016 4.85093 4.90304 5.11343 5.25138 5.28584 5.39134 5.62194 5.75957 5.76323 5.86543 5.99752 6.15893 6.24838 6.41072 6.46771 6.56506 6.71141 6.80317 6.92462 7.12513 7.45870 7.72819 8.08580 8.36173 8.45704 8.91919 9.58568 10.91520 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051630 B = 0.010178 C = 0.009205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.186963 B = 2750.402670 C = 3041.120389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.186 3.814 3 H -0.007 1.007 4 C -0.604 4.604 5 H 0.060 0.940 6 C 0.031 3.969 7 N -0.906 5.906 8 Si 1.048 2.952 9 H -0.285 1.285 10 H -0.272 1.272 11 H -0.286 1.286 12 N -0.670 5.670 13 C 0.054 3.946 14 H 0.046 0.954 15 C -0.142 4.142 16 C 0.046 3.954 17 O -0.376 6.376 18 C 0.075 3.925 19 H 0.060 0.940 20 C -0.150 4.150 21 H 0.049 0.951 22 H 0.021 0.979 23 H 0.051 0.949 24 H 0.268 0.732 25 H 0.342 0.658 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.372 3.905 12.587 13.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.077 3.923 3 H 0.010 0.990 4 C -0.642 4.642 5 H 0.078 0.922 6 C -0.175 4.175 7 N -0.540 5.540 8 Si 0.876 3.124 9 H -0.211 1.211 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.304 5.304 13 C -0.057 4.057 14 H 0.064 0.936 15 C -0.181 4.181 16 C -0.031 4.031 17 O -0.295 6.295 18 C 0.017 3.983 19 H 0.078 0.922 20 C -0.207 4.207 21 H 0.068 0.932 22 H 0.040 0.960 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.164 0.836 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.414 4.625 11.786 12.740 hybrid contribution 1.226 -0.406 0.677 1.458 sum -0.189 4.219 12.463 13.159 Atomic orbital electron populations 1.22243 0.98333 1.00269 0.99028 1.19481 0.92265 0.92257 0.88276 0.98990 1.22100 1.40648 1.10160 0.91278 0.92229 1.25722 0.94868 1.04823 0.92045 1.70852 1.41226 1.10719 1.31226 0.84016 0.77094 0.75270 0.75991 1.21129 1.19882 1.21278 1.60880 1.33083 1.31723 1.04745 1.22914 0.94686 0.95195 0.92934 0.93628 1.23279 0.97999 1.02986 0.93808 1.23502 0.90210 0.92531 0.96845 1.88838 1.38627 1.57544 1.44524 1.22805 0.92330 0.97531 0.85599 0.92178 1.21842 1.01526 0.96832 1.00513 0.93218 0.95955 0.93029 0.92214 0.83625 0.91006 0.89200 0.92875 0.89382 0.91412 0.92699 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.46 37.16 0.31 -2.84 16 2 C 0.19 4.42 2.18 -68.86 -0.15 4.27 16 3 H -0.01 -0.18 6.22 -51.93 -0.32 -0.50 16 4 C -0.60 -16.81 8.84 -34.44 -0.30 -17.11 16 5 H 0.06 1.78 7.92 -52.49 -0.42 1.36 16 6 C 0.03 0.88 5.31 -17.82 -0.09 0.79 16 7 N -0.91 -27.72 13.70 55.43 0.76 -26.96 16 8 Si 1.05 25.14 26.24 -169.99 -4.46 20.68 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.27 -6.06 5.68 56.52 0.32 -5.74 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.67 -13.78 5.21 -99.35 -0.52 -14.30 16 13 C 0.05 0.94 3.32 -66.19 -0.22 0.72 16 14 H 0.05 0.81 7.62 -51.93 -0.40 0.41 16 15 C -0.14 -2.22 5.03 -24.72 -0.12 -2.34 16 16 C 0.05 0.62 7.72 38.21 0.29 0.92 16 17 O -0.38 -6.04 11.19 -35.23 -0.39 -6.44 16 18 C 0.08 1.18 4.06 -26.16 -0.11 1.07 16 19 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 20 C -0.15 -2.25 8.27 37.16 0.31 -1.94 16 21 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.02 0.43 6.01 -51.93 -0.31 0.12 16 23 H 0.05 1.20 4.72 -51.93 -0.24 0.96 16 24 H 0.27 8.17 8.73 -40.82 -0.36 7.81 16 25 H 0.34 7.01 5.58 -39.29 -0.22 6.79 16 26 H 0.07 1.04 7.61 -51.93 -0.39 0.65 16 27 H 0.09 1.53 7.72 -51.93 -0.40 1.13 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.98 7.13 -51.93 -0.37 0.61 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 LS Contribution 246.79 15.07 3.72 3.72 Total: -1.00 -29.82 246.79 -5.79 -35.60 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.81 Total: 4.18 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -0.08 Total: -16.48 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.24 Total: -41.26 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.39 Total: -6.44 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -4.46 Total: 20.68 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.82 -5.79 -35.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252743364.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.089 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds