Wall clock time and date at job start Mon Mar 30 2020 02:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46857 * 2 1 4 4 C 1.50705 * 109.46760 * 240.00446 * 2 1 3 5 5 H 1.08001 * 120.00099 * 245.59474 * 4 2 1 6 6 C 1.37876 * 119.99836 * 65.60031 * 4 2 1 7 7 N 1.31517 * 119.99950 * 195.68443 * 6 4 2 8 8 Si 1.86798 * 120.00195 * 15.68035 * 6 4 2 9 9 H 1.48503 * 109.46851 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.47211 * 300.00082 * 8 6 4 11 11 H 1.48504 * 109.47105 * 60.00467 * 8 6 4 12 12 N 1.46897 * 109.47018 * 120.00708 * 2 1 3 13 13 C 1.46897 * 110.99724 * 274.99447 * 12 2 1 14 14 H 1.09005 * 110.44012 * 318.81220 * 13 12 2 15 15 C 1.54813 * 110.48810 * 81.35772 * 13 12 2 16 16 C 1.54994 * 102.09603 * 139.55295 * 15 13 12 17 17 O 1.44385 * 103.49015 * 322.98002 * 16 15 13 18 18 C 1.43742 * 106.97216 * 40.05667 * 17 16 15 19 19 H 1.09000 * 109.87937 * 92.91679 * 18 17 16 20 20 C 1.53005 * 109.87705 * 214.06089 * 18 17 16 21 21 H 1.09003 * 109.47416 * 187.38255 * 1 2 3 22 22 H 1.08997 * 109.47231 * 307.37808 * 1 2 3 23 23 H 1.09003 * 109.47539 * 67.37919 * 1 2 3 24 24 H 0.97001 * 119.99676 * 354.88264 * 7 6 4 25 25 H 1.00904 * 110.99517 * 151.04409 * 12 2 1 26 26 H 1.08999 * 110.90909 * 257.75422 * 15 13 12 27 27 H 1.09002 * 110.90663 * 21.32084 * 15 13 12 28 28 H 1.09000 * 110.61631 * 81.47830 * 16 15 13 29 29 H 1.08994 * 110.61957 * 204.31703 * 16 15 13 30 30 H 1.08994 * 109.47486 * 183.73290 * 20 18 17 31 31 H 1.09001 * 109.47122 * 303.73282 * 20 18 17 32 32 H 1.08998 * 109.46852 * 63.72788 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5766 -1.6382 -1.1342 6 6 1.7970 -0.1757 -2.4795 7 7 1.9504 -0.9199 -3.5529 8 14 1.2601 1.6056 -2.6469 9 1 1.0749 1.9338 -4.0833 10 1 -0.0210 1.8066 -1.9234 11 1 2.3005 2.4927 -2.0672 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2224 2.3468 14 1 2.4688 1.1939 2.0383 15 6 0.6849 0.3759 2.9947 16 6 1.0257 0.3733 4.5067 17 8 2.1034 -0.5823 4.6074 18 6 2.9544 -0.3767 3.4673 19 1 3.7563 0.3157 3.7234 20 6 3.5433 -1.7128 3.0101 21 1 -0.3634 -1.0192 0.1320 22 1 -0.3633 0.6238 0.8166 23 1 -0.3634 0.3953 -0.9486 24 1 2.3000 -1.8211 -3.4723 25 1 2.9173 -1.1206 1.0285 26 1 0.2218 1.3182 2.7019 27 1 0.0428 -0.4670 2.7387 28 1 1.3574 1.3610 4.8270 29 1 0.1662 0.0494 5.0933 30 1 4.2383 -1.5414 2.1882 31 1 4.0716 -2.1804 3.8410 32 1 2.7396 -2.3687 2.6755 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252743364.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:43 Heat of formation + Delta-G solvation = -66.395758 kcal Electronic energy + Delta-G solvation = -13455.426820 eV Core-core repulsion = 11222.053716 eV Total energy + Delta-G solvation = -2233.373105 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.73750 -37.46111 -34.76214 -32.82517 -32.10074 -29.42773 -26.93245 -26.14880 -23.00311 -22.06275 -20.76286 -19.66956 -17.54063 -16.78857 -16.68695 -16.42592 -15.57177 -15.28423 -14.64227 -14.24445 -13.95337 -13.53921 -13.24499 -13.13435 -12.80316 -12.61909 -12.41078 -12.03630 -11.98180 -11.74529 -11.66037 -11.40304 -10.95965 -10.63075 -10.43562 -9.22918 -8.74893 -6.39441 1.44281 1.50591 1.70171 2.46877 2.93013 3.04834 3.39405 3.63572 3.92178 4.10709 4.27557 4.37915 4.49608 4.57410 4.60497 4.69166 4.84674 4.89844 4.96211 4.99689 5.03804 5.08916 5.25844 5.33910 5.60941 5.78704 5.97372 6.00988 6.27414 6.66530 6.76448 7.39609 8.62489 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051630 B = 0.010178 C = 0.009205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.186963 B = 2750.402670 C = 3041.120389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.189 3.811 3 H -0.004 1.004 4 C -0.605 4.605 5 H 0.022 0.978 6 C -0.021 4.021 7 N -0.939 5.939 8 Si 1.085 2.915 9 H -0.290 1.290 10 H -0.240 1.240 11 H -0.267 1.267 12 N -0.675 5.675 13 C 0.046 3.954 14 H 0.048 0.952 15 C -0.142 4.142 16 C 0.049 3.951 17 O -0.392 6.392 18 C 0.078 3.922 19 H 0.079 0.921 20 C -0.147 4.147 21 H 0.036 0.964 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.251 0.749 25 H 0.338 0.662 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 5.916 14.530 15.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.079 3.921 3 H 0.014 0.986 4 C -0.643 4.643 5 H 0.040 0.960 6 C -0.219 4.219 7 N -0.575 5.575 8 Si 0.906 3.094 9 H -0.216 1.216 10 H -0.165 1.165 11 H -0.192 1.192 12 N -0.309 5.309 13 C -0.065 4.065 14 H 0.066 0.934 15 C -0.181 4.181 16 C -0.028 4.028 17 O -0.312 6.312 18 C 0.020 3.980 19 H 0.097 0.903 20 C -0.205 4.205 21 H 0.055 0.945 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.159 0.841 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.126 0.874 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.050 6.622 13.770 15.416 hybrid contribution 1.473 -1.120 0.135 1.855 sum -0.577 5.502 13.904 14.964 Atomic orbital electron populations 1.22133 0.97058 1.00230 0.99842 1.19349 0.93160 0.91850 0.87721 0.98608 1.22348 1.39621 1.08861 0.93512 0.95967 1.27186 0.94600 1.08303 0.91804 1.70986 1.43724 1.10377 1.32411 0.83576 0.78825 0.70655 0.76308 1.21622 1.16479 1.19190 1.60852 1.33051 1.32409 1.04601 1.23073 0.96648 0.94565 0.92189 0.93389 1.23265 0.96516 1.02960 0.95316 1.23672 0.90276 0.93316 0.95506 1.88826 1.39358 1.58623 1.44363 1.22811 0.92455 0.97739 0.84990 0.90287 1.21793 1.00937 0.96628 1.01094 0.94459 0.92622 0.93894 0.93946 0.84068 0.89557 0.90930 0.90593 0.87427 0.91353 0.91141 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.46 71.98 0.61 -5.16 16 2 C 0.19 8.73 2.18 44.17 0.10 8.83 16 3 H 0.00 -0.16 6.22 -2.39 -0.01 -0.18 16 4 C -0.61 -34.21 8.84 25.60 0.23 -33.98 16 5 H 0.02 1.38 7.92 -2.91 -0.02 1.36 16 6 C -0.02 -1.20 5.31 84.65 0.45 -0.75 16 7 N -0.94 -58.96 13.70 21.45 0.29 -58.67 16 8 Si 1.09 49.35 26.24 68.60 1.80 51.15 16 9 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 10 H -0.24 -9.67 5.68 99.48 0.56 -9.11 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 12 N -0.67 -27.23 5.21 -468.24 -2.44 -29.67 16 13 C 0.05 1.49 3.32 45.91 0.15 1.64 16 14 H 0.05 1.56 7.62 -2.38 -0.02 1.54 16 15 C -0.14 -3.99 5.03 31.90 0.16 -3.83 16 16 C 0.05 1.13 7.72 72.66 0.56 1.69 16 17 O -0.39 -11.47 11.19 -148.98 -1.67 -13.14 16 18 C 0.08 2.25 4.06 30.97 0.13 2.37 16 19 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 20 C -0.15 -4.25 8.27 71.98 0.60 -3.66 16 21 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.05 1.99 6.01 -2.39 -0.01 1.97 16 23 H 0.04 1.89 4.72 -2.39 -0.01 1.88 16 24 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 25 H 0.34 13.93 5.58 -89.69 -0.50 13.43 16 26 H 0.09 2.15 7.61 -2.39 -0.02 2.14 16 27 H 0.07 2.30 7.72 -2.39 -0.02 2.28 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 1.93 7.13 -2.39 -0.02 1.92 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.98 7.42 -2.39 -0.02 1.96 16 Total: -1.00 -64.40 246.79 1.38 -63.02 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.42 Total: 20.14 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 2.98 Total: -32.84 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -2.15 Total: -88.34 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.67 Total: -13.14 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 1.80 Total: 51.15 kcal Total: -64.40 1.38 -63.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252743364.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.378 kcal (2) G-P(sol) polarization free energy of solvation -64.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds