Wall clock time and date at job start Mon Mar 30 2020 02:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46001 * 2 1 4 4 C 1.53036 * 109.45913 * 240.02646 * 2 1 3 5 5 C 1.53123 * 109.27788 * 180.81228 * 4 2 1 6 6 H 1.09000 * 109.52561 * 177.56017 * 5 4 2 7 7 O 1.42905 * 109.52189 * 297.75108 * 5 4 2 8 8 C 1.53123 * 109.16001 * 57.65365 * 5 4 2 9 9 H 1.08997 * 109.49749 * 62.28489 * 8 5 4 10 10 C 1.50697 * 109.50101 * 182.40587 * 8 5 4 11 11 H 1.08004 * 120.00166 * 359.80111 * 10 8 5 12 12 C 1.37883 * 119.99642 * 179.80445 * 10 8 5 13 13 N 1.31508 * 120.00034 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99892 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47135 * 89.99626 * 14 12 10 16 16 H 1.48501 * 109.47098 * 210.00130 * 14 12 10 17 17 H 1.48507 * 109.46932 * 329.99834 * 14 12 10 18 18 C 1.53032 * 109.27911 * 302.34817 * 8 5 4 19 19 N 1.46842 * 109.45735 * 119.98029 * 2 1 3 20 20 C 1.46907 * 110.99676 * 305.84847 * 19 2 1 21 21 H 1.09010 * 109.46840 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47043 * 299.97265 * 1 2 3 23 23 H 1.09001 * 109.47961 * 59.97235 * 1 2 3 24 24 H 1.09000 * 109.50632 * 300.75520 * 4 2 1 25 25 H 1.09006 * 109.50216 * 60.87314 * 4 2 1 26 26 H 0.96697 * 114.00084 * 299.99837 * 7 5 4 27 27 H 0.96999 * 119.99877 * 179.97438 * 13 12 10 28 28 H 1.09003 * 109.46473 * 299.16126 * 18 8 5 29 29 H 1.08995 * 109.46713 * 179.19608 * 18 8 5 30 30 H 1.08999 * 109.47230 * 60.00489 * 20 19 2 31 31 H 1.09004 * 109.46916 * 180.02562 * 20 19 2 32 32 H 1.08994 * 109.47211 * 299.99867 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5709 -0.7363 -1.2356 6 1 3.9378 -1.2865 -2.1020 7 8 4.0623 0.6050 -1.2769 8 6 4.0546 -1.4191 0.0468 9 1 3.7121 -2.4538 0.0594 10 6 5.5603 -1.3859 0.0972 11 1 6.1176 -0.9271 -0.7062 12 6 6.2266 -1.9414 1.1689 13 7 5.5481 -2.5006 2.1468 14 14 8.0931 -1.8997 1.2318 15 1 8.5377 -0.6594 1.9166 16 1 8.5898 -3.0830 1.9790 17 1 8.6356 -1.9237 -0.1505 18 6 3.4863 -0.6780 1.2591 19 7 2.0191 -0.6919 1.1993 20 6 1.4371 -0.1106 2.4165 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3633 0.5134 0.8902 23 1 -0.3635 0.5142 -0.8897 24 1 1.6656 -1.7446 -1.2577 25 1 1.6894 -0.1980 -2.1400 26 1 3.7898 1.0997 -2.0618 27 1 6.0168 -2.8917 2.9006 28 1 3.8403 0.3529 1.2533 29 1 3.8172 -1.1702 2.1736 30 1 0.3515 -0.2011 2.3792 31 1 1.8165 -0.6413 3.2898 32 1 1.7119 0.9420 2.4838 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259618994.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:28 Heat of formation + Delta-G solvation = -75.784651 kcal Electronic energy + Delta-G solvation = -13759.058998 eV Core-core repulsion = 11525.278761 eV Total energy + Delta-G solvation = -2233.780238 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.38333 -37.04939 -35.36211 -32.88478 -32.40705 -28.59367 -27.37977 -25.62353 -23.64887 -21.83175 -20.40706 -18.45858 -17.62340 -16.77378 -16.32048 -15.85740 -15.47935 -15.29007 -14.44066 -14.20836 -13.80576 -13.71991 -12.99595 -12.78531 -12.66541 -12.60036 -12.45499 -12.22570 -11.96893 -11.95134 -11.77619 -11.18571 -10.75359 -10.48345 -10.31916 -9.01863 -8.08374 -6.20335 1.39817 1.40677 1.51266 2.43456 3.09078 3.33868 3.73080 4.04009 4.07136 4.26229 4.47969 4.56361 4.65257 4.67460 4.75184 4.86178 4.92831 5.01507 5.04490 5.17306 5.21660 5.29696 5.43522 5.59269 5.84566 5.97852 6.21934 6.49065 6.55219 6.88556 7.18474 7.46751 8.96417 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.046858 B = 0.012031 C = 0.010331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.409348 B = 2326.744448 C = 2709.591836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.025 0.975 4 C -0.134 4.134 5 C 0.109 3.891 6 H 0.041 0.959 7 O -0.571 6.571 8 C 0.055 3.945 9 H 0.012 0.988 10 C -0.520 4.520 11 H 0.049 0.951 12 C 0.009 3.991 13 N -0.917 5.917 14 Si 0.955 3.045 15 H -0.280 1.280 16 H -0.280 1.280 17 H -0.269 1.269 18 C 0.088 3.912 19 N -0.555 5.555 20 C 0.028 3.972 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.375 0.625 27 H 0.261 0.739 28 H -0.012 1.012 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.742 4.954 -4.724 11.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 H 0.043 0.957 4 C -0.171 4.171 5 C 0.051 3.949 6 H 0.059 0.941 7 O -0.376 6.376 8 C 0.036 3.964 9 H 0.030 0.970 10 C -0.559 4.559 11 H 0.068 0.932 12 C -0.189 4.189 13 N -0.557 5.557 14 Si 0.781 3.219 15 H -0.206 1.206 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.039 4.039 19 N -0.280 5.280 20 C -0.120 4.120 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.222 0.778 27 H 0.070 0.930 28 H 0.006 0.994 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -8.606 4.188 -4.017 10.380 hybrid contribution 1.281 0.823 -0.066 1.524 sum -7.324 5.011 -4.083 9.769 Atomic orbital electron populations 1.21872 0.92410 1.02554 1.02587 1.21575 0.96228 0.94599 0.90232 0.95707 1.22298 0.95367 1.01722 0.97762 1.21912 0.92311 0.82658 0.98043 0.94118 1.86674 1.77420 1.25789 1.47758 1.18665 0.94088 0.93309 0.90328 0.96982 1.21394 0.92530 1.36258 1.05702 0.93236 1.25766 1.02713 0.94958 0.95461 1.70013 1.36520 1.39206 1.09983 0.85605 0.80656 0.77453 0.78220 1.20560 1.20561 1.19317 1.21848 0.84305 0.95762 1.02012 1.62099 1.08313 1.54774 1.02782 1.22371 1.00886 0.96285 0.92437 0.92095 0.91996 0.90386 0.91179 0.88959 0.77779 0.93022 0.99388 0.91398 0.89093 0.92954 0.96799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.77 71.98 0.63 -2.85 16 2 C 0.08 2.83 2.31 44.94 0.10 2.94 16 3 H 0.02 0.92 7.76 -2.39 -0.02 0.91 16 4 C -0.13 -4.49 5.07 30.65 0.16 -4.33 16 5 C 0.11 4.62 3.21 30.68 0.10 4.72 16 6 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 7 O -0.57 -23.44 11.66 -148.98 -1.74 -25.17 16 8 C 0.05 2.91 2.10 -11.49 -0.02 2.89 16 9 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 10 C -0.52 -30.25 8.20 25.60 0.21 -30.04 16 11 H 0.05 2.89 7.64 -2.91 -0.02 2.87 16 12 C 0.01 0.53 5.30 84.66 0.45 0.98 16 13 N -0.92 -54.83 11.33 21.45 0.24 -54.59 16 14 Si 0.95 45.50 29.54 68.60 2.03 47.53 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 C 0.09 4.58 4.38 86.32 0.38 4.96 16 19 N -0.55 -23.27 4.75 -897.19 -4.26 -27.53 16 20 C 0.03 1.00 9.05 127.69 1.16 2.16 16 21 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 22 H 0.06 1.46 6.32 -2.39 -0.02 1.44 16 23 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 26 H 0.38 10.77 9.08 -74.06 -0.67 10.10 16 27 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 28 H -0.01 -0.68 7.76 -2.39 -0.02 -0.70 16 29 H 0.07 3.96 6.04 -2.39 -0.01 3.95 16 30 H 0.09 2.60 6.21 -2.39 -0.01 2.58 16 31 H 0.05 1.93 8.09 -2.39 -0.02 1.92 16 32 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -66.81 251.21 -0.15 -66.96 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.42 Total: 11.37 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 3.16 Total: -18.58 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -4.02 Total: -82.11 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -1.74 Total: -25.17 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -66.81 -0.15 -66.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259618994.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.820 kcal (2) G-P(sol) polarization free energy of solvation -66.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds