Wall clock time and date at job start Mon Mar 30 2020 02:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.45263 * 2 1 4 4 C 1.53032 * 109.46341 * 240.03091 * 2 1 3 5 5 C 1.53124 * 109.28078 * 180.80767 * 4 2 1 6 6 H 1.09002 * 109.51840 * 297.74589 * 5 4 2 7 7 O 1.42899 * 109.52468 * 177.55717 * 5 4 2 8 8 C 1.53118 * 109.16203 * 57.64998 * 5 4 2 9 9 H 1.08997 * 109.50231 * 62.32738 * 8 5 4 10 10 C 1.50701 * 109.50274 * 182.41107 * 8 5 4 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 8 5 12 12 C 1.37871 * 119.99694 * 180.27915 * 10 8 5 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 8 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 8 15 15 H 1.48504 * 109.47209 * 89.99886 * 14 12 10 16 16 H 1.48501 * 109.47358 * 209.99377 * 14 12 10 17 17 H 1.48496 * 109.47341 * 329.99989 * 14 12 10 18 18 C 1.53043 * 109.27543 * 302.34785 * 8 5 4 19 19 N 1.46845 * 109.52344 * 59.18554 * 18 8 5 20 20 C 1.46894 * 111.00095 * 174.16088 * 19 18 8 21 21 H 1.08999 * 109.46847 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46962 * 299.97136 * 1 2 3 23 23 H 1.09003 * 109.47229 * 59.97241 * 1 2 3 24 24 H 1.08998 * 109.50502 * 60.86160 * 4 2 1 25 25 H 1.09003 * 109.53408 * 300.76171 * 4 2 1 26 26 H 0.96703 * 113.99675 * 60.31728 * 7 5 4 27 27 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 28 28 H 1.08997 * 109.45562 * 179.19391 * 18 8 5 29 29 H 1.08997 * 109.46413 * 299.16362 * 18 8 5 30 30 H 1.09004 * 109.47676 * 184.20558 * 20 19 18 31 31 H 1.09007 * 109.47045 * 304.20198 * 20 19 18 32 32 H 1.08997 * 109.47729 * 64.20064 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5710 -0.7360 -1.2356 6 1 3.9457 0.2871 -1.2672 7 8 4.0521 -1.4573 -2.3715 8 6 4.0548 -1.4188 0.0467 9 1 3.7131 -2.4537 0.0591 10 6 5.5606 -1.3854 0.0971 11 1 6.1176 -0.9239 -0.7049 12 6 6.2273 -1.9494 1.1640 13 7 5.5490 -2.5116 2.1405 14 14 8.0940 -1.9149 1.2227 15 1 8.5448 -0.6801 1.9136 16 1 8.5882 -3.1042 1.9621 17 1 8.6332 -1.9329 -0.1608 18 6 3.4865 -0.6776 1.2591 19 7 2.0193 -0.6918 1.1994 20 6 1.4373 -0.1106 2.4165 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5134 0.8902 23 1 -0.3634 0.5143 -0.8898 24 1 1.6895 -0.1980 -2.1399 25 1 1.6660 -1.7446 -1.2584 26 1 3.7829 -1.0797 -3.2200 27 1 6.0180 -2.9088 2.8909 28 1 3.8175 -1.1699 2.1735 29 1 3.8403 0.3533 1.2532 30 1 0.3517 -0.2012 2.3793 31 1 1.8164 -0.6415 3.2898 32 1 1.7119 0.9421 2.4838 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259618996.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:31 Heat of formation + Delta-G solvation = -53.882222 kcal Electronic energy + Delta-G solvation = -13638.989316 eV Core-core repulsion = 11406.158838 eV Total energy + Delta-G solvation = -2232.830477 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.69088 -35.70178 -33.36234 -31.43921 -30.59844 -26.96691 -25.59945 -23.78921 -21.99312 -20.15133 -18.83685 -16.39025 -16.29581 -14.88601 -14.78110 -14.22511 -14.03531 -13.32849 -12.81083 -12.72107 -12.08404 -11.78018 -11.74614 -11.41579 -11.05010 -10.88221 -10.80656 -10.63084 -10.25470 -10.10387 -10.00238 -9.29151 -8.99084 -8.65760 -8.30600 -7.46384 -5.93837 -3.97681 3.34593 3.41294 3.46509 4.47972 4.69299 5.09602 5.36292 5.39286 5.55013 5.70551 5.83590 5.84995 5.99937 6.09862 6.12889 6.17380 6.31000 6.38449 6.49079 6.73039 6.81734 6.92232 7.03581 7.65936 7.78069 7.94886 8.02685 8.18928 8.49125 8.62535 9.05683 9.65324 11.12847 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.041356 B = 0.012278 C = 0.009933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.883941 B = 2279.964382 C = 2818.288533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.029 0.971 4 C -0.141 4.141 5 C 0.109 3.891 6 H 0.035 0.965 7 O -0.552 6.552 8 C 0.062 3.938 9 H 0.042 0.958 10 C -0.500 4.500 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.066 3.934 19 N -0.542 5.542 20 C 0.027 3.973 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.351 0.649 27 H 0.260 0.740 28 H 0.111 0.889 29 H 0.007 0.993 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 5.364 -2.964 9.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 H 0.047 0.953 4 C -0.179 4.179 5 C 0.050 3.950 6 H 0.053 0.947 7 O -0.354 6.354 8 C 0.043 3.957 9 H 0.060 0.940 10 C -0.539 4.539 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.209 1.209 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.061 4.061 19 N -0.267 5.267 20 C -0.121 4.121 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.195 0.805 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -7.610 4.397 -2.335 9.094 hybrid contribution 0.983 1.293 -0.246 1.643 sum -6.627 5.690 -2.581 9.108 Atomic orbital electron populations 1.21916 0.95383 1.02161 1.00786 1.21460 0.94320 0.95008 0.91624 0.95285 1.22381 0.98333 1.01369 0.95857 1.22153 0.89862 0.94494 0.88494 0.94720 1.86746 1.77531 1.56099 1.15062 1.18675 0.95053 0.95886 0.86075 0.93988 1.21100 0.90807 1.36659 1.05321 0.92388 1.24986 0.98256 0.95194 0.95814 1.69868 1.34961 1.38464 1.09904 0.86583 0.85962 0.77340 0.78064 1.20880 1.21252 1.19904 1.22445 0.81650 0.97562 1.04436 1.62124 1.10668 1.53411 1.00474 1.22328 0.99356 0.96599 0.93861 0.91961 0.92822 0.93015 0.93068 0.90853 0.80527 0.93023 0.87091 0.97512 0.92247 0.91655 0.96886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.77 37.16 0.33 -1.74 16 2 C 0.08 1.51 2.44 -67.72 -0.17 1.35 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.14 -2.58 5.00 -26.65 -0.13 -2.72 16 5 C 0.11 2.38 2.89 -26.61 -0.08 2.30 16 6 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 7 O -0.55 -11.86 13.02 -35.23 -0.46 -12.32 16 8 C 0.06 1.62 1.99 -91.69 -0.18 1.44 16 9 H 0.04 1.24 8.14 -51.93 -0.42 0.82 16 10 C -0.50 -14.28 8.27 -34.44 -0.28 -14.57 16 11 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 12 C 0.06 1.65 5.31 -17.82 -0.09 1.55 16 13 N -0.89 -25.95 11.35 55.43 0.63 -25.32 16 14 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 C 0.07 1.60 4.52 -3.83 -0.02 1.58 16 19 N -0.54 -11.15 4.75 -234.93 -1.12 -12.26 16 20 C 0.03 0.47 9.05 60.06 0.54 1.01 16 21 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.05 0.70 6.32 -51.93 -0.33 0.38 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.35 5.44 9.09 45.56 0.41 5.86 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.11 3.00 6.07 -51.93 -0.32 2.69 16 29 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.06 0.88 6.21 -51.93 -0.32 0.56 16 31 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 253.32 15.07 3.82 3.82 Total: -1.00 -30.55 253.32 -6.55 -37.11 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.32 Total: 1.90 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -0.09 Total: -9.78 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.49 Total: -37.58 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.46 Total: -12.32 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.55 -6.55 -37.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259618996.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.776 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds