Wall clock time and date at job start Mon Mar 30 2020 02:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.45486 * 2 1 4 4 C 1.53041 * 109.45931 * 240.02637 * 2 1 3 5 5 H 1.08993 * 109.50254 * 60.83070 * 4 2 1 6 6 C 1.50697 * 109.50680 * 300.74269 * 4 2 1 7 7 H 1.07992 * 120.00029 * 304.98507 * 6 4 2 8 8 C 1.37875 * 119.99890 * 124.98001 * 6 4 2 9 9 N 1.31517 * 120.00343 * 184.80633 * 8 6 4 10 10 Si 1.86802 * 119.99891 * 4.80462 * 8 6 4 11 11 H 1.48510 * 109.46811 * 84.65363 * 10 8 6 12 12 H 1.48501 * 109.47313 * 324.65488 * 10 8 6 13 13 H 1.48496 * 109.47022 * 204.64894 * 10 8 6 14 14 C 1.53126 * 109.27464 * 180.80265 * 4 2 1 15 15 H 1.08997 * 109.52108 * 297.75540 * 14 4 2 16 16 O 1.42899 * 109.52193 * 177.56043 * 14 4 2 17 17 C 1.53119 * 109.15817 * 57.65458 * 14 4 2 18 18 C 1.53030 * 109.28409 * 302.34586 * 17 14 4 19 19 N 1.46847 * 109.46311 * 119.97675 * 2 1 3 20 20 C 1.46906 * 110.99518 * 305.85426 * 19 2 1 21 21 H 1.09009 * 109.47238 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47450 * 299.97263 * 1 2 3 23 23 H 1.08998 * 109.47297 * 59.97471 * 1 2 3 24 24 H 0.96996 * 120.00349 * 180.02562 * 9 8 6 25 25 H 0.96698 * 114.00105 * 174.98024 * 16 14 4 26 26 H 1.08999 * 109.50482 * 182.39967 * 17 14 4 27 27 H 1.09005 * 109.53800 * 62.30789 * 17 14 4 28 28 H 1.09003 * 109.46514 * 299.16573 * 18 17 14 29 29 H 1.08994 * 109.46867 * 179.19380 * 18 17 14 30 30 H 1.08997 * 109.47372 * 60.00276 * 20 19 2 31 31 H 1.09004 * 109.46836 * 179.97438 * 20 19 2 32 32 H 1.08993 * 109.47188 * 300.00093 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 1 1.6889 -0.1985 -2.1399 6 6 1.5228 -2.1364 -1.2606 7 1 1.7038 -2.7837 -0.4154 8 6 0.8186 -2.6049 -2.3494 9 7 0.2863 -3.8072 -2.3206 10 14 0.6205 -1.5320 -3.8657 11 1 1.8112 -1.6858 -4.7399 12 1 0.4895 -0.1114 -3.4533 13 1 -0.5963 -1.9459 -4.6094 14 6 3.5710 -0.7360 -1.2356 15 1 3.9456 0.2871 -1.2672 16 8 4.0521 -1.4574 -2.3715 17 6 4.0548 -1.4187 0.0467 18 6 3.4865 -0.6778 1.2590 19 7 2.0193 -0.6918 1.1993 20 6 1.4372 -0.1106 2.4165 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5134 0.8902 23 1 -0.3634 0.5142 -0.8897 24 1 -0.2088 -4.1370 -3.0867 25 1 5.0140 -1.4422 -2.4685 26 1 5.1439 -1.3947 0.0831 27 1 3.7131 -2.4538 0.0598 28 1 3.8403 0.3532 1.2532 29 1 3.8174 -1.1699 2.1735 30 1 0.3517 -0.2012 2.3792 31 1 1.8160 -0.6418 3.2898 32 1 1.7119 0.9421 2.4837 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259871076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:46 Heat of formation + Delta-G solvation = -42.586609 kcal Electronic energy + Delta-G solvation = -13977.525678 eV Core-core repulsion = 11745.185016 eV Total energy + Delta-G solvation = -2232.340663 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.86068 -35.68886 -32.88358 -31.48245 -30.95105 -26.91894 -25.35265 -24.40642 -21.59106 -20.58642 -18.54148 -16.54860 -16.24336 -14.93974 -14.81727 -14.23024 -13.84746 -13.23730 -13.03967 -12.51896 -12.43201 -12.03080 -11.55153 -11.20566 -10.94946 -10.93425 -10.84518 -10.67601 -10.33915 -9.73284 -9.55532 -9.31648 -9.06454 -8.60921 -8.25036 -7.50573 -5.81801 -3.75571 3.45235 3.51481 3.57372 4.57234 4.65477 5.12336 5.41249 5.50885 5.68826 5.77758 5.78246 5.87453 6.01438 6.05008 6.17080 6.21841 6.27636 6.36980 6.41429 6.61828 6.84648 6.98055 7.09410 7.16884 7.34420 7.82272 7.83505 8.01842 8.59498 8.81266 9.31200 9.83623 11.31760 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.034077 B = 0.016771 C = 0.013830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.482055 B = 1669.131334 C = 2024.150075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.101 3.899 3 H 0.009 0.991 4 C 0.012 3.988 5 H 0.048 0.952 6 C -0.459 4.459 7 H 0.083 0.917 8 C 0.071 3.929 9 N -0.909 5.909 10 Si 0.875 3.125 11 H -0.275 1.275 12 H -0.272 1.272 13 H -0.298 1.298 14 C 0.110 3.890 15 H 0.017 0.983 16 O -0.544 6.544 17 C -0.139 4.139 18 C 0.067 3.933 19 N -0.518 5.518 20 C 0.025 3.975 21 H 0.086 0.914 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.258 0.742 25 H 0.352 0.648 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.016 0.984 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.113 8.265 5.412 11.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.007 4.007 3 H 0.026 0.974 4 C -0.008 4.008 5 H 0.066 0.934 6 C -0.497 4.497 7 H 0.101 0.899 8 C -0.128 4.128 9 N -0.549 5.549 10 Si 0.704 3.296 11 H -0.201 1.201 12 H -0.198 1.198 13 H -0.225 1.225 14 C 0.051 3.949 15 H 0.035 0.965 16 O -0.346 6.346 17 C -0.177 4.177 18 C -0.061 4.061 19 N -0.243 5.243 20 C -0.124 4.124 21 H 0.104 0.896 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.195 0.805 26 H 0.064 0.936 27 H 0.111 0.889 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 4.190 7.531 5.187 10.059 hybrid contribution 0.833 1.530 -0.700 1.877 sum 5.022 9.061 4.488 11.290 Atomic orbital electron populations 1.21801 0.94610 1.03916 0.98964 1.21663 0.95630 0.92381 0.91061 0.97350 1.19453 0.89345 0.98895 0.93065 0.93409 1.20633 1.31499 0.94214 1.03371 0.89903 1.25010 0.95326 0.94794 0.97688 1.69903 1.36732 1.17793 1.30483 0.86933 0.77097 0.80917 0.84616 1.20086 1.19807 1.22508 1.22044 0.98262 0.90351 0.84278 0.96545 1.86787 1.23861 1.76583 1.47349 1.22191 0.97487 1.03193 0.94826 1.21902 0.88371 0.97371 0.98487 1.61799 1.05869 1.55056 1.01591 1.22389 1.01016 0.95958 0.93019 0.89552 0.94543 0.93521 0.93200 0.80492 0.93578 0.88937 0.96542 0.91692 0.91058 0.92378 0.97062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.51 37.16 0.32 -2.41 16 2 C 0.10 2.10 2.13 -67.72 -0.14 1.95 16 3 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 4 C 0.01 0.28 1.85 -91.69 -0.17 0.11 16 5 H 0.05 1.20 4.48 -51.93 -0.23 0.97 16 6 C -0.46 -12.77 6.08 -34.44 -0.21 -12.98 16 7 H 0.08 2.55 7.16 -52.49 -0.38 2.18 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 10 Si 0.87 22.83 27.39 -169.99 -4.66 18.17 16 11 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.27 -6.75 6.20 56.52 0.35 -6.40 16 13 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 14 C 0.11 2.30 3.21 -26.60 -0.09 2.22 16 15 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 16 O -0.54 -11.79 12.87 -35.23 -0.45 -12.24 16 17 C -0.14 -2.62 5.48 -26.65 -0.15 -2.77 16 18 C 0.07 1.17 5.46 -3.84 -0.02 1.15 16 19 N -0.52 -10.09 4.27 -234.93 -1.00 -11.09 16 20 C 0.02 0.39 9.05 60.07 0.54 0.93 16 21 H 0.09 1.99 7.20 -51.92 -0.37 1.62 16 22 H 0.04 0.62 6.32 -51.93 -0.33 0.29 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.35 5.56 9.12 45.56 0.42 5.98 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 2.05 6.89 -51.93 -0.36 1.69 16 28 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 30 H 0.07 1.12 6.21 -51.93 -0.32 0.79 16 31 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 246.86 15.07 3.72 3.72 Total: -1.00 -31.92 246.86 -5.77 -37.69 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.14 Total: 1.25 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.01 Total: -9.81 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.23 Total: -38.78 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.45 Total: -12.24 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.66 Total: 18.17 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.92 -5.77 -37.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.900 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds