Wall clock time and date at job start Mon Mar 30 2020 02:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.45486 * 2 1 4 4 C 1.53041 * 109.45931 * 240.02637 * 2 1 3 5 5 H 1.08993 * 109.50254 * 60.83070 * 4 2 1 6 6 C 1.50697 * 109.50680 * 300.74269 * 4 2 1 7 7 H 1.07992 * 120.00029 * 304.98507 * 6 4 2 8 8 C 1.37875 * 119.99890 * 124.98001 * 6 4 2 9 9 N 1.31517 * 120.00343 * 184.80633 * 8 6 4 10 10 Si 1.86802 * 119.99891 * 4.80462 * 8 6 4 11 11 H 1.48510 * 109.46811 * 84.65363 * 10 8 6 12 12 H 1.48501 * 109.47313 * 324.65488 * 10 8 6 13 13 H 1.48496 * 109.47022 * 204.64894 * 10 8 6 14 14 C 1.53126 * 109.27464 * 180.80265 * 4 2 1 15 15 H 1.08997 * 109.52108 * 297.75540 * 14 4 2 16 16 O 1.42899 * 109.52193 * 177.56043 * 14 4 2 17 17 C 1.53119 * 109.15817 * 57.65458 * 14 4 2 18 18 C 1.53030 * 109.28409 * 302.34586 * 17 14 4 19 19 N 1.46847 * 109.46311 * 119.97675 * 2 1 3 20 20 C 1.46906 * 110.99518 * 305.85426 * 19 2 1 21 21 H 1.09009 * 109.47238 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47450 * 299.97263 * 1 2 3 23 23 H 1.08998 * 109.47297 * 59.97471 * 1 2 3 24 24 H 0.96996 * 120.00349 * 180.02562 * 9 8 6 25 25 H 0.96698 * 114.00105 * 174.98024 * 16 14 4 26 26 H 1.08999 * 109.50482 * 182.39967 * 17 14 4 27 27 H 1.09005 * 109.53800 * 62.30789 * 17 14 4 28 28 H 1.09003 * 109.46514 * 299.16573 * 18 17 14 29 29 H 1.08994 * 109.46867 * 179.19380 * 18 17 14 30 30 H 1.08997 * 109.47372 * 60.00276 * 20 19 2 31 31 H 1.09004 * 109.46836 * 179.97438 * 20 19 2 32 32 H 1.08993 * 109.47188 * 300.00093 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 1 1.6889 -0.1985 -2.1399 6 6 1.5228 -2.1364 -1.2606 7 1 1.7038 -2.7837 -0.4154 8 6 0.8186 -2.6049 -2.3494 9 7 0.2863 -3.8072 -2.3206 10 14 0.6205 -1.5320 -3.8657 11 1 1.8112 -1.6858 -4.7399 12 1 0.4895 -0.1114 -3.4533 13 1 -0.5963 -1.9459 -4.6094 14 6 3.5710 -0.7360 -1.2356 15 1 3.9456 0.2871 -1.2672 16 8 4.0521 -1.4574 -2.3715 17 6 4.0548 -1.4187 0.0467 18 6 3.4865 -0.6778 1.2590 19 7 2.0193 -0.6918 1.1993 20 6 1.4372 -0.1106 2.4165 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5134 0.8902 23 1 -0.3634 0.5142 -0.8897 24 1 -0.2088 -4.1370 -3.0867 25 1 5.0140 -1.4422 -2.4685 26 1 5.1439 -1.3947 0.0831 27 1 3.7131 -2.4538 0.0598 28 1 3.8403 0.3532 1.2532 29 1 3.8174 -1.1699 2.1735 30 1 0.3517 -0.2012 2.3792 31 1 1.8160 -0.6418 3.2898 32 1 1.7119 0.9421 2.4837 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259871076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:46 Heat of formation + Delta-G solvation = -68.163578 kcal Electronic energy + Delta-G solvation = -13978.634779 eV Core-core repulsion = 11745.185016 eV Total energy + Delta-G solvation = -2233.449763 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.43039 -37.26452 -34.85813 -33.03738 -32.78667 -28.64604 -26.73138 -26.32353 -23.16594 -22.14937 -20.36870 -18.50751 -17.89475 -16.55231 -16.41298 -15.93712 -15.51306 -14.92895 -14.63415 -14.40599 -14.01160 -13.65539 -13.03740 -12.90277 -12.78169 -12.53318 -12.38813 -12.35045 -11.92768 -11.64535 -11.32252 -11.23390 -10.84963 -10.48057 -10.30610 -8.90701 -8.07225 -6.01596 1.34955 1.43239 1.46510 2.48936 3.18434 3.28323 3.63322 4.07299 4.21427 4.28441 4.36059 4.45723 4.57468 4.64485 4.74989 4.79600 4.84211 4.93079 4.98920 5.15181 5.21056 5.25327 5.41449 5.54137 5.65761 5.87072 6.38285 6.47393 6.62943 7.00526 7.26588 7.59188 9.10349 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.034077 B = 0.016771 C = 0.013830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.482055 B = 1669.131334 C = 2024.150075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.103 3.897 3 H 0.033 0.967 4 C 0.001 3.999 5 H 0.035 0.965 6 C -0.431 4.431 7 H 0.041 0.959 8 C 0.008 3.992 9 N -0.963 5.963 10 Si 0.930 3.070 11 H -0.280 1.280 12 H -0.249 1.249 13 H -0.300 1.300 14 C 0.108 3.892 15 H 0.048 0.952 16 O -0.575 6.575 17 C -0.134 4.134 18 C 0.068 3.932 19 N -0.551 5.551 20 C 0.026 3.974 21 H 0.045 0.955 22 H 0.069 0.931 23 H 0.046 0.954 24 H 0.255 0.745 25 H 0.377 0.623 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.402 10.896 6.240 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.005 4.005 3 H 0.050 0.950 4 C -0.019 4.019 5 H 0.053 0.947 6 C -0.470 4.470 7 H 0.059 0.941 8 C -0.186 4.186 9 N -0.607 5.607 10 Si 0.758 3.242 11 H -0.206 1.206 12 H -0.174 1.174 13 H -0.228 1.228 14 C 0.049 3.951 15 H 0.066 0.934 16 O -0.381 6.381 17 C -0.172 4.172 18 C -0.060 4.060 19 N -0.277 5.277 20 C -0.121 4.121 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.224 0.776 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.508 10.197 6.034 13.066 hybrid contribution 0.507 0.693 -0.853 1.210 sum 6.015 10.890 5.181 13.476 Atomic orbital electron populations 1.21739 0.94764 1.01738 1.00652 1.21505 0.95579 0.93086 0.90375 0.94972 1.19556 0.91837 0.96070 0.94395 0.94668 1.20705 1.29436 0.95747 1.01066 0.94104 1.25722 0.96074 0.95950 1.00811 1.70057 1.39165 1.20047 1.31381 0.86018 0.76494 0.80570 0.81092 1.20599 1.17370 1.22755 1.22008 0.96020 0.92171 0.84926 0.93371 1.86712 1.26499 1.77032 1.47864 1.22113 0.99707 1.00499 0.94848 1.21956 0.87130 0.98594 0.98342 1.61711 1.07440 1.56195 1.02314 1.22410 1.00665 0.97183 0.91870 0.93570 0.91268 0.93483 0.93593 0.77589 0.89996 0.93374 0.94152 0.89926 0.91488 0.90855 0.95029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 8.51 71.98 0.61 -4.49 16 2 C 0.10 4.03 2.13 44.94 0.10 4.12 16 3 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 4 C 0.00 0.03 1.85 -11.48 -0.02 0.01 16 5 H 0.04 1.70 4.48 -2.39 -0.01 1.69 16 6 C -0.43 -24.47 6.08 25.60 0.16 -24.31 16 7 H 0.04 2.63 7.16 -2.91 -0.02 2.61 16 8 C 0.01 0.50 5.47 84.65 0.46 0.96 16 9 N -0.96 -62.82 13.96 21.45 0.30 -62.52 16 10 Si 0.93 47.68 27.39 68.60 1.88 49.56 16 11 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 12 H -0.25 -11.69 6.20 99.48 0.62 -11.08 16 13 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 14 C 0.11 4.23 3.21 30.68 0.10 4.33 16 15 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 16 O -0.58 -23.96 12.87 -148.98 -1.92 -25.88 16 17 C -0.13 -4.73 5.48 30.64 0.17 -4.56 16 18 C 0.07 2.11 5.46 86.32 0.47 2.59 16 19 N -0.55 -20.13 4.27 -897.18 -3.83 -23.96 16 20 C 0.03 0.75 9.05 127.69 1.16 1.90 16 21 H 0.05 2.14 7.20 -2.38 -0.02 2.13 16 22 H 0.07 2.18 6.32 -2.39 -0.02 2.17 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 25 H 0.38 11.01 9.12 -74.06 -0.68 10.34 16 26 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.05 2.13 6.89 -2.38 -0.02 2.11 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 2.28 8.09 -2.39 -0.02 2.27 16 30 H 0.07 1.92 6.21 -2.39 -0.01 1.91 16 31 H 0.07 1.84 8.09 -2.38 -0.02 1.82 16 32 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -70.95 246.86 -0.03 -70.98 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.34 Total: 11.27 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 3.20 Total: -19.45 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -3.53 Total: -86.48 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -1.92 Total: -25.88 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.88 Total: 49.56 kcal Total: -70.95 -0.03 -70.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.820 kcal (2) G-P(sol) polarization free energy of solvation -70.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds