Wall clock time and date at job start Mon Mar 30 2020 02:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.45324 * 2 1 4 4 C 1.53042 * 109.46094 * 240.03110 * 2 1 3 5 5 H 1.09003 * 109.50006 * 300.78505 * 4 2 1 6 6 C 1.50697 * 109.50462 * 60.86148 * 4 2 1 7 7 H 1.08001 * 120.00041 * 54.88886 * 6 4 2 8 8 C 1.37879 * 120.00490 * 234.89210 * 6 4 2 9 9 N 1.31516 * 119.99812 * 5.14351 * 8 6 4 10 10 Si 1.86800 * 120.00390 * 185.14285 * 8 6 4 11 11 H 1.48507 * 109.46762 * 89.99913 * 10 8 6 12 12 H 1.48500 * 109.47294 * 209.99779 * 10 8 6 13 13 H 1.48502 * 109.47044 * 329.99964 * 10 8 6 14 14 C 1.53110 * 109.28112 * 180.80372 * 4 2 1 15 15 H 1.09004 * 109.52310 * 297.75149 * 14 4 2 16 16 O 1.42897 * 109.52838 * 177.61909 * 14 4 2 17 17 C 1.53129 * 109.15803 * 57.65092 * 14 4 2 18 18 C 1.53028 * 109.28083 * 302.34580 * 17 14 4 19 19 N 1.46843 * 109.46348 * 119.97874 * 2 1 3 20 20 C 1.46898 * 111.00029 * 305.85199 * 19 2 1 21 21 H 1.08998 * 109.46769 * 300.02457 * 1 2 3 22 22 H 1.08996 * 109.46840 * 60.02045 * 1 2 3 23 23 H 1.08997 * 109.47191 * 180.02562 * 1 2 3 24 24 H 0.96997 * 120.00320 * 180.02562 * 9 8 6 25 25 H 0.96695 * 114.00349 * 179.97438 * 16 14 4 26 26 H 1.09004 * 109.49932 * 182.40389 * 17 14 4 27 27 H 1.09001 * 109.49960 * 62.29030 * 17 14 4 28 28 H 1.09006 * 109.46685 * 299.16455 * 18 17 14 29 29 H 1.09003 * 109.46612 * 179.19575 * 18 17 14 30 30 H 1.09007 * 109.46997 * 299.74666 * 20 19 2 31 31 H 1.08999 * 109.46911 * 59.74136 * 20 19 2 32 32 H 1.08999 * 109.47608 * 179.74708 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2501 5 1 1.6653 -1.7444 -1.2581 6 6 1.5554 0.0019 -2.4804 7 1 1.7605 1.0551 -2.6040 8 6 0.8502 -0.6812 -3.4485 9 7 0.5126 -1.9371 -3.2529 10 14 0.3742 0.1771 -5.0379 11 1 1.4513 -0.0098 -6.0431 12 1 -0.8911 -0.4036 -5.5544 13 1 0.1843 1.6272 -4.7797 14 6 3.5709 -0.7360 -1.2358 15 1 3.9456 0.2871 -1.2673 16 8 4.0520 -1.4561 -2.3724 17 6 4.0548 -1.4188 0.0466 18 6 3.4866 -0.6778 1.2589 19 7 2.0193 -0.6918 1.1993 20 6 1.4374 -0.1107 2.4165 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5135 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 0.0169 -2.4179 -3.9340 25 1 5.0162 -1.5054 -2.4276 26 1 5.1439 -1.3947 0.0829 27 1 3.7124 -2.4536 0.0592 28 1 3.8404 0.3532 1.2531 29 1 3.8176 -1.1700 2.1734 30 1 1.7159 0.9409 2.4861 31 1 0.3516 -0.1972 2.3771 32 1 1.8130 -0.6445 3.2895 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259871081.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:48 Heat of formation + Delta-G solvation = -51.253391 kcal Electronic energy + Delta-G solvation = -13776.542385 eV Core-core repulsion = 11543.825902 eV Total energy + Delta-G solvation = -2232.716483 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.65491 -35.54083 -33.13906 -31.38297 -30.65450 -26.71591 -25.33227 -24.41887 -21.34084 -20.45265 -18.70511 -16.48186 -16.03196 -14.86242 -14.64558 -14.35289 -13.80038 -13.41670 -12.83504 -12.58352 -12.20879 -11.61053 -11.38096 -11.20664 -10.92155 -10.84667 -10.73173 -10.62416 -10.29109 -10.23760 -9.56442 -9.16899 -8.77573 -8.59577 -8.32617 -7.61538 -5.88264 -3.89484 3.38336 3.44709 3.46445 4.48503 4.64757 5.28450 5.39438 5.49044 5.71524 5.78503 5.81191 5.92546 6.13456 6.18603 6.26402 6.28309 6.40438 6.45171 6.55337 6.87227 6.91750 7.11827 7.29152 7.50358 7.71069 7.82237 7.95039 8.13394 8.53018 8.79412 9.22429 9.72259 11.21475 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.038706 B = 0.013692 C = 0.011119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.221164 B = 2044.570957 C = 2517.595384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.095 3.905 3 H 0.019 0.981 4 C 0.048 3.952 5 H 0.085 0.915 6 C -0.504 4.504 7 H 0.047 0.953 8 C 0.077 3.923 9 N -0.882 5.882 10 Si 0.885 3.115 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.111 3.889 15 H 0.026 0.974 16 O -0.539 6.539 17 C -0.151 4.151 18 C 0.066 3.934 19 N -0.543 5.543 20 C 0.024 3.976 21 H 0.028 0.972 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.259 0.741 25 H 0.345 0.655 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.022 0.978 29 H 0.063 0.937 30 H 0.014 0.986 31 H 0.070 0.930 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.102 2.624 7.545 8.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.013 4.013 3 H 0.037 0.963 4 C 0.028 3.972 5 H 0.103 0.897 6 C -0.542 4.542 7 H 0.065 0.935 8 C -0.126 4.126 9 N -0.520 5.520 10 Si 0.713 3.287 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.201 1.201 14 C 0.051 3.949 15 H 0.044 0.956 16 O -0.340 6.340 17 C -0.190 4.190 18 C -0.062 4.062 19 N -0.268 5.268 20 C -0.124 4.124 21 H 0.046 0.954 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.187 0.813 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.175 1.920 7.315 8.203 hybrid contribution 0.751 1.394 -0.651 1.712 sum 3.926 3.314 6.665 8.416 Atomic orbital electron populations 1.21647 0.94556 1.01925 0.99874 1.21883 0.95650 0.94322 0.89411 0.96333 1.18937 0.87361 1.00306 0.90549 0.89726 1.20772 1.34869 0.95158 1.03450 0.93490 1.24859 0.95144 0.94727 0.97828 1.69908 1.38664 1.09419 1.33968 0.86726 0.77715 0.79650 0.84562 1.20704 1.21405 1.20106 1.22204 0.99271 0.91213 0.82165 0.95638 1.86859 1.22828 1.77530 1.46760 1.22424 0.98289 1.01717 0.96534 1.21878 0.88457 0.97867 0.97994 1.62080 1.06110 1.55867 1.02720 1.22366 1.00870 0.96365 0.92822 0.95351 0.91122 0.92432 0.93120 0.81255 0.93181 0.90795 0.95978 0.91897 0.96711 0.91117 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 8.53 37.16 0.32 -2.30 16 2 C 0.09 2.09 1.95 -67.72 -0.13 1.96 16 3 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 4 C 0.05 1.21 1.85 -91.69 -0.17 1.04 16 5 H 0.08 2.49 6.93 -51.93 -0.36 2.13 16 6 C -0.50 -14.03 6.80 -34.44 -0.23 -14.26 16 7 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 8 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 9 N -0.88 -26.25 12.62 55.43 0.70 -25.55 16 10 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.11 2.49 2.93 -26.61 -0.08 2.41 16 15 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 16 O -0.54 -12.55 13.02 -35.23 -0.46 -13.01 16 17 C -0.15 -2.82 5.72 -26.65 -0.15 -2.97 16 18 C 0.07 1.16 5.46 -3.84 -0.02 1.14 16 19 N -0.54 -10.53 4.75 -234.92 -1.11 -11.64 16 20 C 0.02 0.38 9.06 60.06 0.54 0.93 16 21 H 0.03 0.51 6.32 -51.93 -0.33 0.18 16 22 H 0.07 1.62 7.24 -51.93 -0.38 1.24 16 23 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.35 5.97 9.09 45.56 0.41 6.39 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 1.10 6.20 -51.93 -0.32 0.77 16 32 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 254.09 15.07 3.83 3.83 Total: -1.00 -30.85 254.09 -6.41 -37.26 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.32 Total: 2.20 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.02 Total: -9.96 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.42 Total: -37.19 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.46 Total: -13.01 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.85 -6.41 -37.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871081.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.997 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds