Wall clock time and date at job start Mon Mar 30 2020 02:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46961 * 2 1 4 4 O 1.42895 * 109.47636 * 239.99788 * 2 1 3 5 5 C 1.53003 * 109.47067 * 119.99595 * 2 1 3 6 6 N 1.46499 * 112.84954 * 296.86815 * 5 2 1 7 7 C 1.46498 * 120.00046 * 292.67956 * 6 5 2 8 8 C 1.36935 * 119.99853 * 112.68614 * 6 5 2 9 9 H 1.07998 * 119.99860 * 331.88805 * 8 6 5 10 10 C 1.38816 * 119.99862 * 151.62680 * 8 6 5 11 11 N 1.31615 * 120.00018 * 348.19803 * 10 8 6 12 12 Si 1.86803 * 119.99751 * 168.20512 * 10 8 6 13 13 H 1.48497 * 109.47412 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46975 * 119.99771 * 12 10 8 15 15 H 1.48503 * 109.46742 * 239.99373 * 12 10 8 16 16 C 1.53779 * 113.61113 * 68.06455 * 5 2 1 17 17 C 1.54048 * 86.98668 * 140.01998 * 16 5 2 18 18 C 1.53779 * 113.61427 * 165.66973 * 5 2 1 19 19 H 1.09002 * 109.47509 * 304.90632 * 1 2 3 20 20 H 1.09000 * 109.47141 * 64.90598 * 1 2 3 21 21 H 1.09000 * 109.46934 * 184.90663 * 1 2 3 22 22 H 0.96698 * 114.00196 * 300.00629 * 4 2 1 23 23 H 1.09003 * 109.47091 * 265.79992 * 7 6 5 24 24 H 1.08994 * 109.47326 * 25.79783 * 7 6 5 25 25 H 1.08996 * 109.47441 * 145.79856 * 7 6 5 26 26 H 0.97005 * 119.99911 * 180.02562 * 11 10 8 27 27 H 1.09002 * 113.61496 * 254.60931 * 16 5 2 28 28 H 1.08998 * 113.61916 * 25.51440 * 16 5 2 29 29 H 1.08997 * 113.61881 * 220.02123 * 17 16 5 30 30 H 1.08998 * 113.69115 * 89.12140 * 17 16 5 31 31 H 1.09001 * 113.61130 * 334.48426 * 18 5 2 32 32 H 1.09002 * 113.61670 * 105.30587 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 1.6544 -0.0480 2.4920 7 6 2.2149 1.2657 2.8178 8 6 0.7701 -0.6468 3.3491 9 1 0.0295 -1.3340 2.9676 10 6 0.8292 -0.3747 4.7091 11 7 1.8649 0.2665 5.2075 12 14 -0.5612 -0.9188 5.8317 13 1 -1.6004 -1.6147 5.0311 14 1 -0.0301 -1.8435 6.8650 15 1 -1.1587 0.2700 6.4913 16 6 1.7490 -2.2312 1.2508 17 6 3.1551 -2.4191 1.8514 18 6 3.5324 -1.0861 1.1839 19 1 -0.3634 0.5881 0.8428 20 1 -0.3633 0.4358 -0.9307 21 1 -0.3633 -1.0239 0.0879 22 1 1.7211 -1.5952 -1.2329 23 1 3.0937 1.1391 3.4501 24 1 2.4994 1.7775 1.8985 25 1 1.4686 1.8580 3.3473 26 1 1.9064 0.4563 6.1579 27 1 0.9426 -2.5198 1.9249 28 1 1.6402 -2.6559 0.2528 29 1 3.6917 -3.2773 1.4468 30 1 3.1745 -2.3828 2.9406 31 1 3.9103 -1.1982 0.1676 32 1 4.1651 -0.4499 1.8029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259883617.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:55 Heat of formation + Delta-G solvation = -28.023661 kcal Electronic energy + Delta-G solvation = -13950.778041 eV Core-core repulsion = 11719.068875 eV Total energy + Delta-G solvation = -2231.709166 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.89427 -37.08794 -35.61175 -32.75728 -31.16969 -28.34027 -26.62482 -25.90882 -24.06353 -22.50261 -19.72799 -18.15869 -17.85602 -17.16862 -16.16313 -15.84469 -15.41148 -15.03785 -14.55464 -14.07040 -13.52286 -13.03578 -12.98470 -12.94032 -12.73868 -12.65961 -12.31613 -12.20590 -12.07812 -11.79366 -11.54136 -11.40136 -10.88686 -10.62099 -10.40679 -8.59020 -7.77290 -5.29982 1.44976 1.47525 1.56290 2.50967 3.34616 3.43027 3.74518 3.83240 3.99150 4.09849 4.19897 4.53692 4.62674 4.64504 4.86184 4.91059 4.97947 5.08906 5.16403 5.21424 5.24430 5.36586 5.42605 5.58355 5.67423 5.74094 5.82434 6.41815 6.92967 7.20678 7.93050 8.40032 9.24904 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.041037 B = 0.013055 C = 0.012572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.149651 B = 2144.239575 C = 2226.587936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.108 3.892 3 H 0.076 0.924 4 O -0.567 6.567 5 C 0.144 3.856 6 N -0.582 5.582 7 C 0.178 3.822 8 C -0.239 4.239 9 H 0.073 0.927 10 C -0.052 4.052 11 N -0.938 5.938 12 Si 0.958 3.042 13 H -0.264 1.264 14 H -0.297 1.297 15 H -0.296 1.296 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.149 4.149 19 H 0.049 0.951 20 H 0.064 0.936 21 H 0.059 0.941 22 H 0.382 0.618 23 H 0.002 0.998 24 H 0.025 0.975 25 H 0.014 0.986 26 H 0.245 0.755 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.098 0.902 32 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.164 -3.653 -9.703 10.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.047 3.953 3 H 0.094 0.906 4 O -0.374 6.374 5 C 0.054 3.946 6 N -0.306 5.306 7 C 0.033 3.967 8 C -0.369 4.369 9 H 0.091 0.909 10 C -0.247 4.247 11 N -0.585 5.585 12 Si 0.788 3.212 13 H -0.188 1.188 14 H -0.224 1.224 15 H -0.223 1.223 16 C -0.167 4.167 17 C -0.158 4.158 18 C -0.188 4.188 19 H 0.068 0.932 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.231 0.769 23 H 0.020 0.980 24 H 0.043 0.957 25 H 0.033 0.967 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.882 -3.027 -9.668 10.169 hybrid contribution -0.671 -0.392 1.549 1.733 sum -1.552 -3.419 -8.119 8.946 Atomic orbital electron populations 1.22166 0.95791 1.02408 1.01407 1.21917 0.93464 0.95581 0.84305 0.90589 1.86502 1.77685 1.29941 1.43246 1.21631 0.93622 0.92360 0.86946 1.43597 1.50933 1.16571 1.19462 1.20436 0.96243 0.85429 0.94623 1.19338 1.07263 1.23079 0.87210 0.90913 1.25824 0.99051 1.01432 0.98360 1.70211 1.29856 1.46750 1.11682 0.85327 0.79697 0.77117 0.79106 1.18771 1.22426 1.22284 1.23111 0.97513 0.95012 1.01097 1.22465 0.97336 0.97322 0.98709 1.23330 0.97762 0.97432 1.00288 0.93152 0.91716 0.92199 0.76862 0.97982 0.95674 0.96696 0.94606 0.92024 0.87654 0.90429 0.93857 0.88384 0.94838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.05 9.33 71.98 0.67 -4.38 16 2 C 0.11 3.64 3.34 30.60 0.10 3.74 16 3 H 0.08 2.76 7.22 -2.38 -0.02 2.74 16 4 O -0.57 -16.33 12.18 -148.98 -1.81 -18.14 16 5 C 0.14 5.54 0.58 4.13 0.00 5.54 16 6 N -0.58 -27.98 2.51 -676.77 -1.70 -29.68 16 7 C 0.18 8.83 8.50 127.77 1.09 9.92 16 8 C -0.24 -12.46 8.52 84.03 0.72 -11.74 16 9 H 0.07 3.69 6.47 -2.91 -0.02 3.67 16 10 C -0.05 -2.84 5.12 84.86 0.43 -2.41 16 11 N -0.94 -55.51 10.99 21.65 0.24 -55.27 16 12 Si 0.96 44.70 29.57 68.60 2.03 46.73 16 13 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 14 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 15 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 16 C -0.13 -4.46 6.13 31.21 0.19 -4.27 16 17 C -0.12 -4.43 7.97 31.21 0.25 -4.18 16 18 C -0.15 -5.54 7.16 31.12 0.22 -5.31 16 19 H 0.05 1.85 8.00 -2.39 -0.02 1.83 16 20 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 21 H 0.06 1.77 7.57 -2.39 -0.02 1.75 16 22 H 0.38 8.29 7.10 -74.06 -0.53 7.76 16 23 H 0.00 0.11 7.29 -2.39 -0.02 0.09 16 24 H 0.02 1.08 7.07 -2.39 -0.02 1.07 16 25 H 0.01 0.77 7.60 -2.39 -0.02 0.75 16 26 H 0.24 14.18 8.31 -92.70 -0.77 13.41 16 27 H 0.06 2.39 5.98 -2.39 -0.01 2.38 16 28 H 0.11 2.69 6.29 -2.39 -0.02 2.67 16 29 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.10 3.16 7.24 -2.39 -0.02 3.15 16 32 H 0.03 1.41 7.84 -2.39 -0.02 1.39 16 Total: -1.00 -61.19 251.62 3.01 -58.19 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.57 Total: 11.28 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 3.68 Total: -13.10 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.46 Total: -84.95 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -1.81 Total: -18.14 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -61.19 3.01 -58.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259883617.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.163 kcal (2) G-P(sol) polarization free energy of solvation -61.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds