Wall clock time and date at job start Mon Mar 30 2020 02:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46908 * 110.99783 * 2 1 4 4 C 1.50701 * 109.61163 * 56.99071 * 3 2 1 5 5 H 1.07999 * 119.99348 * 234.99627 * 4 3 2 6 6 C 1.37869 * 120.00201 * 55.00134 * 4 3 2 7 7 N 1.31518 * 120.00107 * 6.03577 * 6 4 3 8 8 Si 1.86803 * 120.00039 * 186.02719 * 6 4 3 9 9 H 1.48502 * 109.47210 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46781 * 120.00321 * 8 6 4 11 11 H 1.48498 * 109.47648 * 240.00254 * 8 6 4 12 12 C 1.53171 * 109.54413 * 296.76724 * 3 2 1 13 13 C 1.53092 * 109.16351 * 183.15589 * 12 3 2 14 14 O 1.42905 * 109.41453 * 57.60345 * 13 12 3 15 15 C 1.42901 * 114.10074 * 298.84531 * 14 13 12 16 16 H 1.09006 * 109.47849 * 301.17654 * 15 14 13 17 17 C 1.53000 * 109.49043 * 181.14867 * 15 14 13 18 18 C 1.53093 * 109.41410 * 61.15782 * 15 14 13 19 19 H 1.09008 * 109.46973 * 302.05251 * 1 2 3 20 20 H 1.08999 * 109.47589 * 62.05614 * 1 2 3 21 21 H 1.09000 * 109.47448 * 182.05482 * 1 2 3 22 22 H 1.00893 * 111.00056 * 123.95661 * 2 1 3 23 23 H 0.97003 * 119.99998 * 180.02562 * 7 6 4 24 24 H 1.09002 * 109.52229 * 303.05950 * 12 3 2 25 25 H 1.08999 * 109.52660 * 63.24849 * 12 3 2 26 26 H 1.09002 * 109.47517 * 297.62158 * 13 12 3 27 27 H 1.09000 * 109.49309 * 177.59706 * 13 12 3 28 28 H 1.09003 * 109.46632 * 300.05229 * 17 15 14 29 29 H 1.09003 * 109.46753 * 60.04727 * 17 15 14 30 30 H 1.08999 * 109.47028 * 180.02562 * 17 15 14 31 31 H 1.09000 * 109.51871 * 182.48817 * 18 15 14 32 32 H 1.08998 * 109.51757 * 62.29547 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.4546 2.1209 1.1904 5 1 0.9338 3.0563 1.0485 6 6 1.6249 1.6124 2.4606 7 7 2.3599 0.5375 2.6455 8 14 0.8120 2.4503 3.9189 9 1 0.0445 3.6308 3.4469 10 1 -0.1093 1.4964 4.5873 11 1 1.8538 2.8893 4.8816 12 6 1.5721 2.0829 -1.2888 13 6 2.1902 3.4832 -1.3162 14 8 3.6118 3.3769 -1.2165 15 6 4.0678 2.7624 -0.0096 16 1 3.7115 3.3349 0.8469 17 6 5.5974 2.7287 -0.0002 18 6 3.5251 1.3331 0.0703 19 1 -0.3633 0.5454 0.8711 20 1 -0.3634 0.4815 -0.9078 21 1 -0.3634 -1.0270 0.0368 22 1 1.8305 -0.5261 0.7813 23 1 2.4794 0.1796 3.5392 24 1 1.9210 1.5137 -2.1504 25 1 0.4855 2.1637 -1.3203 26 1 1.8094 4.0650 -0.4769 27 1 1.9274 3.9785 -2.2509 28 1 5.9534 2.1566 -0.8569 29 1 5.9835 3.7465 -0.0571 30 1 5.9448 2.2595 0.9203 31 1 3.8352 0.8778 1.0108 32 1 3.9135 0.7490 -0.7639 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260840105.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:20 Heat of formation + Delta-G solvation = -54.810473 kcal Electronic energy + Delta-G solvation = -14071.519481 eV Core-core repulsion = 11838.648751 eV Total energy + Delta-G solvation = -2232.870729 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.70734 -35.38756 -32.08647 -31.53484 -30.18973 -26.90040 -25.19693 -23.59889 -22.52852 -20.32272 -18.80037 -16.00405 -15.23657 -15.02907 -14.87312 -14.09698 -13.66381 -13.23387 -12.66780 -12.28447 -11.95918 -11.83355 -11.47466 -11.40089 -11.04194 -10.82421 -10.64730 -10.41882 -10.18093 -10.01516 -9.68716 -9.11280 -9.03431 -8.51408 -8.39182 -6.97637 -6.05153 -4.22827 3.18313 3.28265 3.31716 4.30400 4.71403 5.10197 5.70088 5.91108 5.97956 6.16403 6.24373 6.26295 6.36039 6.47906 6.54025 6.62764 6.73038 6.74526 6.87530 6.97019 7.07904 7.14167 7.24395 7.50181 7.64215 7.81629 8.17345 8.30002 8.65595 8.85807 9.11857 9.47250 10.87338 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030048 B = 0.016975 C = 0.014200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.610958 B = 1649.131499 C = 1971.343720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.691 5.691 3 C 0.231 3.769 4 C -0.530 4.530 5 H 0.054 0.946 6 C 0.069 3.931 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.134 4.134 13 C 0.074 3.926 14 O -0.399 6.399 15 C 0.097 3.903 16 H 0.062 0.938 17 C -0.139 4.139 18 C -0.124 4.124 19 H 0.028 0.972 20 H 0.039 0.961 21 H 0.031 0.969 22 H 0.354 0.646 23 H 0.263 0.737 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 2.181 -2.963 3.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.324 5.324 3 C 0.141 3.859 4 C -0.570 4.570 5 H 0.072 0.928 6 C -0.132 4.132 7 N -0.529 5.529 8 Si 0.714 3.286 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.172 4.172 13 C -0.003 4.003 14 O -0.319 6.319 15 C 0.040 3.960 16 H 0.080 0.920 17 C -0.197 4.197 18 C -0.163 4.163 19 H 0.047 0.953 20 H 0.058 0.942 21 H 0.050 0.950 22 H 0.176 0.824 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.042 2.031 -3.636 4.293 hybrid contribution -0.959 0.583 2.070 2.355 sum 0.084 2.613 -1.566 3.048 Atomic orbital electron populations 1.21848 0.91316 0.97984 0.99557 1.60985 1.05580 1.15893 1.49910 1.18457 0.90981 0.86177 0.90317 1.21781 1.35908 1.07673 0.91628 0.92767 1.24942 0.94523 0.95134 0.98631 1.69680 1.38162 1.22728 1.22379 0.86625 0.79505 0.79654 0.82811 1.19849 1.20996 1.20952 1.22150 0.99437 0.96076 0.99549 1.22377 0.81215 0.96873 0.99836 1.87693 1.21495 1.81199 1.41468 1.22007 0.92686 0.94756 0.86596 0.92012 1.21748 0.95224 1.01027 1.01672 1.22065 0.97544 0.94606 1.02059 0.95328 0.94223 0.94997 0.82443 0.92656 0.93183 0.92714 0.93177 0.91293 0.92827 0.93257 0.91648 0.88705 0.94847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.96 10.04 60.06 0.60 1.56 16 2 N -0.69 -16.53 6.37 -108.17 -0.69 -17.22 16 3 C 0.23 5.51 0.42 -132.57 -0.06 5.46 16 4 C -0.53 -13.52 4.90 -34.44 -0.17 -13.69 16 5 H 0.05 1.42 6.75 -52.49 -0.35 1.06 16 6 C 0.07 1.78 5.04 -17.82 -0.09 1.69 16 7 N -0.89 -23.19 9.68 55.43 0.54 -22.65 16 8 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C -0.13 -2.91 4.64 -26.60 -0.12 -3.03 16 13 C 0.07 1.51 6.61 37.21 0.25 1.76 16 14 O -0.40 -8.61 10.41 -35.23 -0.37 -8.98 16 15 C 0.10 2.10 3.04 -26.68 -0.08 2.02 16 16 H 0.06 1.45 7.38 -51.93 -0.38 1.06 16 17 C -0.14 -2.52 9.57 37.16 0.36 -2.16 16 18 C -0.12 -2.92 4.30 -26.59 -0.11 -3.03 16 19 H 0.03 0.67 6.78 -51.92 -0.35 0.32 16 20 H 0.04 0.81 6.57 -51.93 -0.34 0.47 16 21 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.35 9.02 6.75 -39.30 -0.27 8.76 16 23 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.05 1.16 6.70 -51.93 -0.35 0.81 16 26 H 0.05 1.05 6.77 -51.93 -0.35 0.70 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 2.41 6.22 -51.93 -0.32 2.08 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 245.08 15.07 3.69 3.69 Total: -1.00 -26.19 245.08 -6.09 -32.28 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.81 Total: 6.87 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 0.57 Total: -9.42 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.15 Total: -39.87 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.37 Total: -8.98 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -26.19 -6.09 -32.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260840105.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.529 kcal (2) G-P(sol) polarization free energy of solvation -26.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds