Wall clock time and date at job start Mon Mar 30 2020 02:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.50363 * 2 1 4 4 C 1.53042 * 109.53526 * 120.10105 * 2 1 3 5 5 N 1.46846 * 109.52025 * 179.13861 * 4 2 1 6 6 C 1.46900 * 110.99745 * 174.15739 * 5 4 2 7 7 C 1.46843 * 111.20060 * 298.25705 * 5 4 2 8 8 C 1.53040 * 109.52392 * 61.74295 * 7 5 4 9 9 C 1.53115 * 109.27691 * 300.82256 * 8 7 5 10 10 O 1.42905 * 109.52525 * 297.74896 * 9 8 7 11 11 C 1.50699 * 109.52257 * 177.56159 * 9 8 7 12 12 H 1.08010 * 119.99884 * 240.31651 * 11 9 8 13 13 C 1.37874 * 120.00274 * 60.31523 * 11 9 8 14 14 N 1.31510 * 120.00067 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99953 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47558 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46766 * 120.00059 * 15 13 11 18 18 H 1.48500 * 109.47293 * 239.99852 * 15 13 11 19 19 H 1.09001 * 109.47299 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.46968 * 299.99886 * 1 2 3 21 21 H 1.09000 * 109.47656 * 59.99726 * 1 2 3 22 22 H 1.08996 * 109.45914 * 299.15143 * 4 2 1 23 23 H 1.08991 * 109.46254 * 59.12470 * 4 2 1 24 24 H 1.09003 * 109.46895 * 188.16312 * 6 5 4 25 25 H 1.08999 * 109.47643 * 308.16427 * 6 5 4 26 26 H 1.08998 * 109.46889 * 68.16794 * 6 5 4 27 27 H 1.08997 * 109.46271 * 301.72735 * 7 5 4 28 28 H 1.08996 * 109.46613 * 181.75869 * 7 5 4 29 29 H 1.09001 * 109.50523 * 180.88031 * 8 7 5 30 30 H 1.08999 * 109.50216 * 60.76494 * 8 7 5 31 31 H 0.96705 * 113.99492 * 299.68301 * 10 9 8 32 32 H 0.96997 * 119.99980 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0417 -0.7234 1.2478 5 7 3.5101 -0.7412 1.2371 6 6 4.0388 -1.3048 2.4864 7 6 4.0238 -1.4716 0.0714 8 6 3.5712 -0.7706 -1.2116 9 6 2.0412 -0.7234 -1.2490 10 8 1.5227 -2.0548 -1.2755 11 6 1.5903 0.0186 -2.4807 12 1 0.9981 0.9167 -2.3836 13 6 1.9336 -0.4489 -3.7315 14 7 2.6542 -1.5426 -3.8497 15 14 1.3751 0.4713 -5.2582 16 1 0.5835 1.6619 -4.8569 17 1 2.5630 0.9066 -6.0359 18 1 0.5356 -0.4226 -6.0957 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.6914 -0.2024 2.1388 23 1 1.6662 -1.7465 1.2541 24 1 5.1206 -1.1743 2.5146 25 1 3.5886 -0.7912 3.3359 26 1 3.7996 -2.3671 2.5356 27 1 3.6389 -2.4913 0.0832 28 1 5.1129 -1.4942 0.1079 29 1 3.9395 -1.3218 -2.0768 30 1 3.9672 0.2447 -1.2306 31 1 1.8066 -2.5722 -2.0416 32 1 2.8960 -1.8713 -4.7297 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260894392.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:45 Heat of formation + Delta-G solvation = -57.417308 kcal Electronic energy + Delta-G solvation = -13934.250157 eV Core-core repulsion = 11701.266387 eV Total energy + Delta-G solvation = -2232.983770 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.58731 -35.18686 -32.31362 -31.95763 -30.08638 -26.74633 -25.87281 -23.93271 -21.53465 -20.57681 -18.37327 -16.87719 -15.06822 -14.90727 -14.44505 -14.08882 -13.71059 -13.24833 -12.77319 -12.46625 -11.90147 -11.70638 -11.60197 -11.07779 -11.02427 -10.99621 -10.60091 -10.40923 -10.12762 -10.02305 -9.83379 -9.63766 -8.81147 -8.50102 -7.97437 -7.57540 -6.10354 -4.19570 3.24986 3.33732 3.38107 4.36457 4.64098 5.14530 5.57962 5.71957 5.81686 5.97703 6.11072 6.14559 6.22262 6.30980 6.34742 6.49286 6.55059 6.62540 6.70945 6.99678 7.12380 7.25070 7.27351 7.60534 7.66783 7.81852 7.89276 8.08195 8.28441 8.82637 9.48116 9.62972 10.92646 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049818 B = 0.012550 C = 0.011168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.914064 B = 2230.499278 C = 2506.503451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 H 0.069 0.931 4 C 0.066 3.934 5 N -0.545 5.545 6 C 0.027 3.973 7 C 0.060 3.940 8 C -0.133 4.133 9 C 0.256 3.744 10 O -0.592 6.592 11 C -0.526 4.526 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.901 5.901 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 H 0.053 0.947 20 H 0.028 0.972 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.034 0.966 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.017 0.983 27 H 0.030 0.970 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.377 0.623 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 0.291 6.518 6.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.087 4.087 3 H 0.087 0.913 4 C -0.061 4.061 5 N -0.269 5.269 6 C -0.122 4.122 7 C -0.068 4.068 8 C -0.171 4.171 9 C 0.217 3.783 10 O -0.400 6.400 11 C -0.564 4.564 12 H 0.079 0.921 13 C -0.133 4.133 14 N -0.543 5.543 15 Si 0.724 3.276 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 H 0.072 0.928 20 H 0.047 0.953 21 H 0.079 0.921 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.227 0.773 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.836 0.862 6.909 7.013 hybrid contribution -0.142 -0.543 -1.351 1.463 sum 0.693 0.319 5.558 5.611 Atomic orbital electron populations 1.21587 0.95732 1.01474 0.99790 1.21086 0.95029 0.98745 0.93793 0.91305 1.22093 0.86578 0.99263 0.98211 1.61999 1.08767 1.54084 1.02089 1.22301 1.00108 0.96950 0.92825 1.22156 0.97584 0.95641 0.91399 1.22245 0.99863 0.99894 0.95139 1.18583 0.88155 0.80700 0.90869 1.86082 1.76379 1.27148 1.50437 1.21821 1.32823 1.10682 0.91064 0.92135 1.24993 0.94191 0.94990 0.99159 1.69599 1.38314 1.22403 1.23961 0.86477 0.78449 0.79889 0.82783 1.19763 1.21014 1.21015 0.92750 0.95290 0.92080 0.92775 0.94737 0.92148 0.92283 0.96414 0.95214 0.92978 0.88710 0.93186 0.77268 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.81 37.16 0.33 -2.28 16 2 C -0.07 -1.48 2.17 -90.54 -0.20 -1.68 16 3 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 4 C 0.07 1.32 4.61 -3.83 -0.02 1.30 16 5 N -0.54 -10.57 4.91 -242.97 -1.19 -11.76 16 6 C 0.03 0.42 9.62 60.06 0.58 1.00 16 7 C 0.06 1.24 5.33 -3.83 -0.02 1.22 16 8 C -0.13 -3.17 4.82 -26.65 -0.13 -3.30 16 9 C 0.26 6.32 0.35 -91.65 -0.03 6.29 16 10 O -0.59 -15.19 11.06 -35.23 -0.39 -15.58 16 11 C -0.53 -14.05 7.54 -34.44 -0.26 -14.31 16 12 H 0.06 1.63 6.89 -52.48 -0.36 1.26 16 13 C 0.07 1.78 5.22 -17.82 -0.09 1.69 16 14 N -0.90 -24.06 9.73 55.43 0.54 -23.52 16 15 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H 0.05 1.15 7.63 -51.93 -0.40 0.75 16 20 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 21 H 0.06 1.30 6.79 -51.93 -0.35 0.95 16 22 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 23 H 0.03 0.73 7.76 -51.93 -0.40 0.32 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.82 8.02 -51.93 -0.42 0.40 16 26 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.03 0.65 7.76 -51.93 -0.40 0.24 16 28 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 29 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.38 10.01 7.14 45.56 0.33 10.34 16 32 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 248.37 15.07 3.74 3.74 Total: -1.00 -26.94 248.37 -6.58 -33.52 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.42 Total: 7.83 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 0.16 Total: -10.08 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: -0.65 Total: -35.28 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.39 Total: -15.58 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -26.94 -6.58 -33.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260894392.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.901 kcal (2) G-P(sol) polarization free energy of solvation -26.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds