Wall clock time and date at job start Mon Mar 30 2020 02:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.50363 * 2 1 4 4 C 1.53042 * 109.53526 * 120.10105 * 2 1 3 5 5 N 1.46846 * 109.52025 * 179.13861 * 4 2 1 6 6 C 1.46900 * 110.99745 * 174.15739 * 5 4 2 7 7 C 1.46843 * 111.20060 * 298.25705 * 5 4 2 8 8 C 1.53040 * 109.52392 * 61.74295 * 7 5 4 9 9 C 1.53115 * 109.27691 * 300.82256 * 8 7 5 10 10 O 1.42905 * 109.52525 * 297.74896 * 9 8 7 11 11 C 1.50699 * 109.52257 * 177.56159 * 9 8 7 12 12 H 1.08010 * 119.99884 * 240.31651 * 11 9 8 13 13 C 1.37874 * 120.00274 * 60.31523 * 11 9 8 14 14 N 1.31510 * 120.00067 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99953 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47558 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46766 * 120.00059 * 15 13 11 18 18 H 1.48500 * 109.47293 * 239.99852 * 15 13 11 19 19 H 1.09001 * 109.47299 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.46968 * 299.99886 * 1 2 3 21 21 H 1.09000 * 109.47656 * 59.99726 * 1 2 3 22 22 H 1.08996 * 109.45914 * 299.15143 * 4 2 1 23 23 H 1.08991 * 109.46254 * 59.12470 * 4 2 1 24 24 H 1.09003 * 109.46895 * 188.16312 * 6 5 4 25 25 H 1.08999 * 109.47643 * 308.16427 * 6 5 4 26 26 H 1.08998 * 109.46889 * 68.16794 * 6 5 4 27 27 H 1.08997 * 109.46271 * 301.72735 * 7 5 4 28 28 H 1.08996 * 109.46613 * 181.75869 * 7 5 4 29 29 H 1.09001 * 109.50523 * 180.88031 * 8 7 5 30 30 H 1.08999 * 109.50216 * 60.76494 * 8 7 5 31 31 H 0.96705 * 113.99492 * 299.68301 * 10 9 8 32 32 H 0.96997 * 119.99980 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0417 -0.7234 1.2478 5 7 3.5101 -0.7412 1.2371 6 6 4.0388 -1.3048 2.4864 7 6 4.0238 -1.4716 0.0714 8 6 3.5712 -0.7706 -1.2116 9 6 2.0412 -0.7234 -1.2490 10 8 1.5227 -2.0548 -1.2755 11 6 1.5903 0.0186 -2.4807 12 1 0.9981 0.9167 -2.3836 13 6 1.9336 -0.4489 -3.7315 14 7 2.6542 -1.5426 -3.8497 15 14 1.3751 0.4713 -5.2582 16 1 0.5835 1.6619 -4.8569 17 1 2.5630 0.9066 -6.0359 18 1 0.5356 -0.4226 -6.0957 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.6914 -0.2024 2.1388 23 1 1.6662 -1.7465 1.2541 24 1 5.1206 -1.1743 2.5146 25 1 3.5886 -0.7912 3.3359 26 1 3.7996 -2.3671 2.5356 27 1 3.6389 -2.4913 0.0832 28 1 5.1129 -1.4942 0.1079 29 1 3.9395 -1.3218 -2.0768 30 1 3.9672 0.2447 -1.2306 31 1 1.8066 -2.5722 -2.0416 32 1 2.8960 -1.8713 -4.7297 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260894392.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:44 Heat of formation + Delta-G solvation = -76.522798 kcal Electronic energy + Delta-G solvation = -13935.078634 eV Core-core repulsion = 11701.266387 eV Total energy + Delta-G solvation = -2233.812246 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.31997 -36.93834 -34.15508 -33.89489 -31.86366 -28.46747 -27.54102 -25.63113 -23.28836 -22.24543 -20.18615 -18.88121 -17.03238 -16.57894 -16.06544 -15.79950 -15.37613 -15.08852 -14.41410 -14.22779 -13.55872 -13.44772 -13.10670 -12.87967 -12.77873 -12.63772 -12.37238 -12.19441 -12.01785 -11.77417 -11.65136 -11.46617 -10.67495 -10.48756 -9.90819 -9.15011 -8.11591 -6.28196 1.38975 1.42803 1.52665 2.41559 3.07587 3.16924 4.03409 4.22579 4.28870 4.39109 4.47585 4.63869 4.66987 4.71743 4.85652 4.88253 4.93935 5.00225 5.00911 5.22554 5.38302 5.44097 5.53145 5.65542 5.83043 6.03046 6.24174 6.27901 6.37170 6.77297 7.41997 7.55071 8.88946 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049818 B = 0.012550 C = 0.011168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.914064 B = 2230.499278 C = 2506.503451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.071 4.071 3 H 0.063 0.937 4 C 0.073 3.927 5 N -0.554 5.554 6 C 0.026 3.974 7 C 0.069 3.931 8 C -0.127 4.127 9 C 0.246 3.754 10 O -0.595 6.595 11 C -0.548 4.548 12 H 0.052 0.948 13 C 0.027 3.973 14 N -0.915 5.915 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.282 1.282 19 H 0.041 0.959 20 H 0.063 0.937 21 H 0.044 0.956 22 H 0.083 0.917 23 H 0.020 0.980 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.019 0.981 27 H 0.017 0.983 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.370 0.630 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.930 0.790 7.641 7.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.090 4.090 3 H 0.081 0.919 4 C -0.055 4.055 5 N -0.278 5.278 6 C -0.122 4.122 7 C -0.059 4.059 8 C -0.166 4.166 9 C 0.207 3.793 10 O -0.402 6.402 11 C -0.586 4.586 12 H 0.070 0.930 13 C -0.172 4.172 14 N -0.557 5.557 15 Si 0.779 3.221 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.208 1.208 19 H 0.060 0.940 20 H 0.082 0.918 21 H 0.063 0.937 22 H 0.102 0.898 23 H 0.038 0.962 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.218 0.782 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.894 1.362 8.051 8.214 hybrid contribution -0.146 -0.695 -1.685 1.829 sum 0.748 0.667 6.366 6.444 Atomic orbital electron populations 1.21497 0.94697 1.00906 1.00715 1.21085 0.96045 0.98180 0.93691 0.91893 1.22022 0.86993 0.98384 0.98103 1.61982 1.08456 1.54319 1.03052 1.22411 1.01181 0.97167 0.91412 1.21973 0.98579 0.94489 0.90831 1.22065 0.99411 0.98993 0.96100 1.18767 0.88718 0.80109 0.91709 1.86081 1.76576 1.27688 1.49901 1.22071 1.33227 1.10839 0.92460 0.93006 1.25637 0.94307 0.95776 1.01513 1.69693 1.38475 1.23011 1.24485 0.85595 0.78021 0.78769 0.79701 1.19693 1.20631 1.20757 0.93964 0.91805 0.93698 0.89837 0.96184 0.90548 0.90071 0.96202 0.96505 0.91151 0.91161 0.94433 0.78162 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 8.81 71.98 0.63 -4.13 16 2 C -0.07 -3.06 2.17 -10.74 -0.02 -3.08 16 3 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 4 C 0.07 2.73 4.61 86.33 0.40 3.13 16 5 N -0.55 -20.21 4.91 -922.62 -4.53 -24.74 16 6 C 0.03 0.72 9.62 127.69 1.23 1.95 16 7 C 0.07 2.81 5.33 86.33 0.46 3.27 16 8 C -0.13 -6.10 4.82 30.65 0.15 -5.95 16 9 C 0.25 12.22 0.35 -11.46 0.00 12.21 16 10 O -0.59 -30.92 11.06 -148.98 -1.65 -32.57 16 11 C -0.55 -29.60 7.54 25.60 0.19 -29.41 16 12 H 0.05 2.82 6.89 -2.91 -0.02 2.80 16 13 C 0.03 1.42 5.22 84.65 0.44 1.86 16 14 N -0.92 -49.41 9.73 21.45 0.21 -49.20 16 15 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H 0.04 1.74 7.63 -2.39 -0.02 1.72 16 20 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 21 H 0.04 1.88 6.79 -2.39 -0.02 1.87 16 22 H 0.08 2.65 8.04 -2.39 -0.02 2.63 16 23 H 0.02 0.81 7.76 -2.39 -0.02 0.79 16 24 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.08 1.91 8.02 -2.39 -0.02 1.89 16 26 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.02 0.72 7.76 -2.39 -0.02 0.70 16 28 H 0.07 2.57 8.12 -2.39 -0.02 2.55 16 29 H 0.07 3.69 6.17 -2.39 -0.01 3.68 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.37 20.09 7.14 -74.05 -0.53 19.56 16 32 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -56.64 248.37 0.09 -56.55 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.56 Total: 25.14 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 3.48 Total: -20.15 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -4.32 Total: -73.94 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -1.65 Total: -32.57 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -56.64 0.09 -56.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260894392.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.973 kcal (2) G-P(sol) polarization free energy of solvation -56.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds