Wall clock time and date at job start Mon Mar 30 2020 02:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.50466 * 2 1 4 4 C 1.53038 * 109.50588 * 239.87972 * 2 1 3 5 5 N 1.46840 * 109.52498 * 299.24250 * 4 2 1 6 6 C 1.46901 * 110.99868 * 174.15975 * 5 4 2 7 7 C 1.46849 * 111.19581 * 298.25093 * 5 4 2 8 8 C 1.53179 * 109.55328 * 61.74566 * 7 5 4 9 9 C 1.53112 * 109.20746 * 300.86040 * 8 7 5 10 10 O 1.42903 * 109.52277 * 297.68426 * 9 8 7 11 11 C 1.50706 * 109.52392 * 177.56254 * 9 8 7 12 12 H 1.07993 * 120.00198 * 240.12213 * 11 9 8 13 13 C 1.37875 * 119.99794 * 60.12503 * 11 9 8 14 14 N 1.31513 * 120.00154 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00182 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46965 * 59.99433 * 15 13 11 17 17 H 1.48496 * 109.47693 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47033 * 300.00016 * 15 13 11 19 19 H 1.09001 * 109.47143 * 299.91875 * 1 2 3 20 20 H 1.08997 * 109.47042 * 59.92249 * 1 2 3 21 21 H 1.09006 * 109.46723 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.45545 * 59.25718 * 4 2 1 23 23 H 1.09003 * 109.46218 * 179.22633 * 4 2 1 24 24 H 1.08994 * 109.47208 * 59.99815 * 6 5 4 25 25 H 1.09003 * 109.46902 * 179.97438 * 6 5 4 26 26 H 1.08993 * 109.47250 * 299.99455 * 6 5 4 27 27 H 1.09004 * 109.46563 * 181.75884 * 7 5 4 28 28 H 1.08994 * 109.46844 * 301.73991 * 7 5 4 29 29 H 1.09005 * 109.58651 * 180.90655 * 8 7 5 30 30 H 1.08997 * 109.48517 * 60.74815 * 8 7 5 31 31 H 0.96700 * 114.00311 * 299.87834 * 10 9 8 32 32 H 0.97009 * 120.00195 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0410 -0.7239 -1.2478 5 7 1.5676 -2.1138 -1.2372 6 6 1.9224 -2.8003 -2.4865 7 6 2.0847 -2.8420 -0.0715 8 6 1.5750 -2.1814 1.2131 9 6 2.0412 -0.7234 1.2490 10 8 3.4693 -0.6792 1.2756 11 6 1.4935 -0.0496 2.4808 12 1 0.8472 0.8101 2.3838 13 6 1.8177 -0.5308 3.7315 14 7 2.6053 -1.5774 3.8496 15 14 1.1384 0.3038 5.2583 16 1 -0.3457 0.2567 5.2293 17 1 1.6319 -0.4008 6.4688 18 1 1.5881 1.7187 5.2906 19 1 -0.3633 0.5126 0.8907 20 1 -0.3633 0.5150 -0.8893 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6670 -0.2196 -2.1388 23 1 3.1310 -0.7115 -1.2540 24 1 3.0059 -2.8010 -2.6056 25 1 1.5604 -3.8279 -2.4519 26 1 1.4646 -2.2817 -3.3287 27 1 1.7424 -3.8762 -0.1081 28 1 3.1744 -2.8195 -0.0832 29 1 1.9715 -2.7117 2.0789 30 1 0.4857 -2.2157 1.2321 31 1 3.8623 -1.1212 2.0406 32 1 2.8331 -1.9162 4.7296 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260894403.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:48 Heat of formation + Delta-G solvation = -54.241948 kcal Electronic energy + Delta-G solvation = -14000.259423 eV Core-core repulsion = 11767.413346 eV Total energy + Delta-G solvation = -2232.846076 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.71452 -35.14404 -32.25265 -32.02580 -29.90583 -26.77346 -25.73377 -23.89292 -21.67064 -21.19059 -17.59002 -16.77499 -15.24817 -14.97971 -14.36770 -14.14369 -13.84475 -13.41922 -12.82532 -12.41727 -11.86015 -11.63968 -11.39377 -11.09008 -11.00536 -10.79771 -10.60261 -10.48414 -10.24857 -10.00413 -9.71492 -9.66670 -8.83894 -8.47928 -7.96054 -7.54315 -6.09570 -4.18908 3.28194 3.32776 3.36090 4.36811 4.65953 5.14262 5.59244 5.70967 5.83081 5.96812 6.04055 6.15286 6.25090 6.30445 6.32672 6.56808 6.61207 6.68841 6.88238 6.98800 7.07761 7.19760 7.35447 7.57535 7.69072 7.83592 7.88110 8.09587 8.29423 8.82728 9.48327 9.62695 10.93354 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054429 B = 0.012362 C = 0.011428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.307814 B = 2264.551309 C = 2449.505753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.069 4.069 3 H 0.060 0.940 4 C 0.066 3.934 5 N -0.540 5.540 6 C 0.027 3.973 7 C 0.058 3.942 8 C -0.132 4.132 9 C 0.255 3.745 10 O -0.596 6.596 11 C -0.527 4.527 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.897 3.103 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 H 0.055 0.945 20 H 0.030 0.970 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.033 0.967 24 H 0.016 0.984 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.029 0.971 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.378 0.622 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -1.416 -6.528 6.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.062 4.062 5 N -0.264 5.264 6 C -0.122 4.122 7 C -0.069 4.069 8 C -0.171 4.171 9 C 0.216 3.784 10 O -0.405 6.405 11 C -0.566 4.566 12 H 0.079 0.921 13 C -0.133 4.133 14 N -0.543 5.543 15 Si 0.724 3.276 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 H 0.074 0.926 20 H 0.049 0.951 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.035 0.965 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.228 0.772 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.020 -1.190 -6.909 7.296 hybrid contribution 0.629 0.023 1.333 1.474 sum -1.391 -1.167 -5.576 5.865 Atomic orbital electron populations 1.21640 0.94996 1.02046 0.99516 1.21022 0.95673 0.98256 0.93815 0.92157 1.22058 0.97406 0.88468 0.98228 1.61991 1.59907 1.02560 1.01968 1.22302 0.97937 0.99005 0.92970 1.22191 0.97079 0.96125 0.91512 1.22284 1.00207 0.99553 0.95025 1.18593 0.78616 0.90294 0.90881 1.86082 1.22232 1.81510 1.50646 1.21771 1.29621 1.14100 0.91072 0.92134 1.24995 0.94645 0.94536 0.99142 1.69588 1.36728 1.23824 1.24168 0.86584 0.79345 0.79655 0.81971 1.20212 1.21286 1.20252 0.92563 0.95084 0.91894 0.92719 0.94876 0.96502 0.92183 0.92259 0.92981 0.95313 0.88839 0.92790 0.77172 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 8.47 37.16 0.31 -2.20 16 2 C -0.07 -1.52 2.46 -90.54 -0.22 -1.74 16 3 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 4 C 0.07 1.31 4.77 -3.84 -0.02 1.29 16 5 N -0.54 -10.28 4.19 -242.87 -1.02 -11.30 16 6 C 0.03 0.41 9.59 60.06 0.58 0.99 16 7 C 0.06 1.21 5.33 -3.76 -0.02 1.19 16 8 C -0.13 -3.13 4.48 -26.58 -0.12 -3.25 16 9 C 0.26 6.35 0.45 -91.65 -0.04 6.31 16 10 O -0.60 -15.64 11.82 -35.23 -0.42 -16.06 16 11 C -0.53 -14.15 7.52 -34.44 -0.26 -14.41 16 12 H 0.06 1.62 6.56 -52.49 -0.34 1.28 16 13 C 0.07 1.79 5.22 -17.82 -0.09 1.70 16 14 N -0.90 -24.15 9.72 55.43 0.54 -23.61 16 15 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H 0.06 1.17 6.49 -51.93 -0.34 0.84 16 20 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.06 1.30 6.01 -51.93 -0.31 0.99 16 22 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 23 H 0.03 0.70 7.76 -51.93 -0.40 0.30 16 24 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 28 H 0.03 0.62 7.76 -51.93 -0.40 0.22 16 29 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 30 H 0.05 1.29 6.58 -51.93 -0.34 0.95 16 31 H 0.38 10.16 7.15 45.56 0.33 10.48 16 32 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 244.53 15.07 3.69 3.69 Total: -1.00 -27.07 244.53 -6.34 -33.41 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -4.22 Total: 8.13 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 0.12 Total: -10.13 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -0.48 Total: -34.91 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.42 Total: -16.06 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -27.07 -6.34 -33.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260894403.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.831 kcal (2) G-P(sol) polarization free energy of solvation -27.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds