Wall clock time and date at job start Mon Mar 30 2020 02:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.57000 * 2 1 4 4 C 1.53092 * 109.52295 * 239.84180 * 2 1 3 5 5 O 1.42899 * 109.41544 * 182.48738 * 4 2 1 6 6 C 1.42903 * 114.10052 * 61.15346 * 5 4 2 7 7 C 1.53094 * 109.41429 * 298.84253 * 6 5 4 8 8 C 1.53174 * 109.52092 * 120.15237 * 2 1 3 9 9 C 1.50699 * 109.61739 * 56.97797 * 8 2 1 10 10 H 1.08001 * 119.99954 * 2.82676 * 9 8 2 11 11 C 1.37872 * 120.00258 * 182.82986 * 9 8 2 12 12 N 1.31521 * 120.00084 * 353.24001 * 11 9 8 13 13 Si 1.86801 * 119.99963 * 173.23926 * 11 9 8 14 14 H 1.48493 * 109.47075 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47250 * 120.00200 * 13 11 9 16 16 H 1.48505 * 109.46819 * 239.99750 * 13 11 9 17 17 C 1.52996 * 109.54576 * 296.75314 * 8 2 1 18 18 N 1.46906 * 109.47131 * 305.29924 * 17 8 2 19 19 H 1.08996 * 109.47269 * 180.16027 * 1 2 3 20 20 H 1.09005 * 109.47210 * 300.16245 * 1 2 3 21 21 H 1.09007 * 109.47410 * 60.15508 * 1 2 3 22 22 H 1.09000 * 109.48026 * 62.49757 * 4 2 1 23 23 H 1.08999 * 109.47673 * 302.46998 * 4 2 1 24 24 H 1.09003 * 109.47761 * 58.82522 * 6 5 4 25 25 H 1.08997 * 109.48148 * 178.84593 * 6 5 4 26 26 H 1.08996 * 109.51826 * 177.50724 * 7 6 5 27 27 H 1.08992 * 109.52415 * 297.70457 * 7 6 5 28 28 H 0.96993 * 120.00133 * 179.97438 * 12 11 9 29 29 H 1.08997 * 109.47414 * 65.29985 * 17 8 2 30 30 H 1.09006 * 109.47335 * 185.30073 * 17 8 2 31 31 H 1.00907 * 110.99713 * 173.49184 * 18 17 8 32 32 H 1.00894 * 111.00044 * 297.44882 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4694 -0.7743 -1.2163 6 6 4.0043 -1.4816 -0.0956 7 6 3.5716 -0.7870 1.1982 8 6 2.0418 -0.7252 1.2484 9 6 1.4818 -2.1237 1.2864 10 1 0.8624 -2.4796 0.4763 11 6 1.7600 -2.9489 2.3552 12 7 2.6189 -2.5668 3.2750 13 14 0.9170 -4.6099 2.4971 14 1 0.0021 -4.8008 1.3431 15 1 1.9405 -5.6858 2.5013 16 1 0.1377 -4.6631 3.7601 17 6 1.6012 0.0368 2.4997 18 7 2.0459 1.4337 2.4044 19 1 -0.3633 -1.0276 0.0029 20 1 -0.3634 0.5164 0.8886 21 1 -0.3634 0.5114 -0.8914 22 1 1.7158 -0.1886 -2.1388 23 1 1.6431 -1.7392 -1.2676 24 1 3.6315 -2.5058 -0.1006 25 1 5.0925 -1.4905 -0.1572 26 1 3.9416 -1.3499 2.0551 27 1 3.9780 0.2241 1.2223 28 1 2.8144 -3.1471 4.0272 29 1 0.5146 0.0061 2.5800 30 1 2.0439 -0.4260 3.3818 31 1 1.6774 1.9832 3.1664 32 1 3.0526 1.4912 2.3708 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260978817.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:09 Heat of formation + Delta-G solvation = -57.457770 kcal Electronic energy + Delta-G solvation = -14161.276919 eV Core-core repulsion = 11928.291394 eV Total energy + Delta-G solvation = -2232.985525 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.79737 -35.21196 -32.33660 -31.93779 -29.98198 -26.33727 -25.40075 -24.11031 -21.22356 -20.99441 -18.47068 -15.68894 -15.26479 -15.06475 -14.78558 -14.19956 -13.56942 -13.40902 -12.99959 -12.69261 -12.00729 -11.37514 -11.20226 -10.99593 -10.97611 -10.75566 -10.59961 -10.49638 -9.93159 -9.87948 -9.30109 -8.90143 -8.85380 -8.34022 -8.07095 -7.53966 -6.01791 -4.09336 3.24107 3.33786 3.37443 4.38063 4.93770 5.20355 5.73623 6.01764 6.03649 6.18563 6.35169 6.47973 6.53859 6.58210 6.64598 6.76895 6.85589 7.01145 7.13805 7.16870 7.31125 7.40402 7.50800 7.66273 7.87392 8.00351 8.16647 8.33413 8.37977 8.51936 8.92645 9.54461 10.97909 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030564 B = 0.016706 C = 0.015212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.903058 B = 1675.653651 C = 1840.239594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 H 0.066 0.934 4 C 0.073 3.927 5 O -0.403 6.403 6 C 0.074 3.926 7 C -0.140 4.140 8 C 0.086 3.914 9 C -0.499 4.499 10 H 0.059 0.941 11 C 0.064 3.936 12 N -0.888 5.888 13 Si 0.884 3.116 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.070 3.930 18 N -0.857 5.857 19 H 0.056 0.944 20 H 0.051 0.949 21 H 0.026 0.974 22 H 0.064 0.936 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.026 0.974 28 H 0.258 0.742 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.317 0.683 32 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 2.942 -2.400 3.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.122 4.122 3 H 0.084 0.916 4 C -0.003 4.003 5 O -0.323 6.323 6 C -0.002 4.002 7 C -0.178 4.178 8 C 0.085 3.915 9 C -0.538 4.538 10 H 0.077 0.923 11 C -0.136 4.136 12 N -0.527 5.527 13 Si 0.712 3.288 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.060 4.060 18 N -0.385 5.385 19 H 0.075 0.925 20 H 0.070 0.930 21 H 0.045 0.955 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.747 2.942 -3.064 4.313 hybrid contribution -0.170 -1.297 1.403 1.918 sum -0.918 1.646 -1.661 2.512 Atomic orbital electron populations 1.21633 0.96410 1.01254 0.99327 1.21578 0.94966 0.99332 0.96290 0.91608 1.22517 0.80957 0.99618 0.97236 1.87692 1.20758 1.77109 1.46717 1.22436 0.95764 0.95787 0.86225 1.22209 0.99421 0.97799 0.98413 1.18069 0.91087 0.92951 0.89389 1.21210 1.30269 0.97146 1.05159 0.92264 1.24935 0.94813 0.97835 0.96047 1.69821 1.33215 1.37107 1.12541 0.86656 0.79679 0.84420 0.78005 1.19818 1.21206 1.21130 1.21953 0.98224 0.84865 1.00929 1.59041 1.14775 1.13964 1.50711 0.92509 0.93036 0.95472 0.91760 0.93371 0.92842 0.91976 0.88454 0.95532 0.93187 0.93555 0.92659 0.87366 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.63 37.16 0.32 -2.22 16 2 C -0.10 -2.19 2.01 -90.48 -0.18 -2.37 16 3 H 0.07 1.45 7.37 -51.93 -0.38 1.06 16 4 C 0.07 1.52 5.90 37.21 0.22 1.74 16 5 O -0.40 -8.91 10.77 -35.23 -0.38 -9.29 16 6 C 0.07 1.63 6.62 37.21 0.25 1.88 16 7 C -0.14 -3.23 4.60 -26.59 -0.12 -3.35 16 8 C 0.09 1.98 0.11 -155.48 -0.02 1.96 16 9 C -0.50 -12.56 5.53 -34.44 -0.19 -12.75 16 10 H 0.06 1.52 5.71 -52.49 -0.30 1.22 16 11 C 0.06 1.65 5.13 -17.82 -0.09 1.56 16 12 N -0.89 -23.27 9.46 55.43 0.52 -22.75 16 13 Si 0.88 20.40 29.54 -169.99 -5.02 15.38 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.07 1.58 4.98 -3.82 -0.02 1.56 16 18 N -0.86 -16.45 8.52 -10.37 -0.09 -16.54 16 19 H 0.06 1.16 6.50 -51.93 -0.34 0.82 16 20 H 0.05 1.02 6.67 -51.93 -0.35 0.68 16 21 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 23 H 0.05 1.04 6.82 -51.93 -0.35 0.68 16 24 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.10 2.45 6.03 -51.93 -0.31 2.14 16 27 H 0.03 0.58 6.70 -51.93 -0.35 0.23 16 28 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.05 1.08 6.81 -51.93 -0.35 0.73 16 30 H 0.06 1.38 6.26 -51.93 -0.33 1.06 16 31 H 0.32 5.35 9.08 -39.29 -0.36 4.99 16 32 H 0.33 6.20 7.43 -39.30 -0.29 5.91 16 LS Contribution 238.58 15.07 3.60 3.60 Total: -1.00 -26.00 238.58 -5.70 -31.70 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -4.49 Total: 9.88 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 0.16 Total: -11.99 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.44 Total: -39.28 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.38 Total: -9.29 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -26.00 -5.70 -31.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260978817.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.760 kcal (2) G-P(sol) polarization free energy of solvation -25.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds