Wall clock time and date at job start Mon Mar 30 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.57000 * 2 1 4 4 C 1.53092 * 109.52295 * 239.84180 * 2 1 3 5 5 O 1.42899 * 109.41544 * 182.48738 * 4 2 1 6 6 C 1.42903 * 114.10052 * 61.15346 * 5 4 2 7 7 C 1.53094 * 109.41429 * 298.84253 * 6 5 4 8 8 C 1.53174 * 109.52092 * 120.15237 * 2 1 3 9 9 C 1.50699 * 109.61739 * 56.97797 * 8 2 1 10 10 H 1.08001 * 119.99954 * 2.82676 * 9 8 2 11 11 C 1.37872 * 120.00258 * 182.82986 * 9 8 2 12 12 N 1.31521 * 120.00084 * 353.24001 * 11 9 8 13 13 Si 1.86801 * 119.99963 * 173.23926 * 11 9 8 14 14 H 1.48493 * 109.47075 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47250 * 120.00200 * 13 11 9 16 16 H 1.48505 * 109.46819 * 239.99750 * 13 11 9 17 17 C 1.52996 * 109.54576 * 296.75314 * 8 2 1 18 18 N 1.46906 * 109.47131 * 305.29924 * 17 8 2 19 19 H 1.08996 * 109.47269 * 180.16027 * 1 2 3 20 20 H 1.09005 * 109.47210 * 300.16245 * 1 2 3 21 21 H 1.09007 * 109.47410 * 60.15508 * 1 2 3 22 22 H 1.09000 * 109.48026 * 62.49757 * 4 2 1 23 23 H 1.08999 * 109.47673 * 302.46998 * 4 2 1 24 24 H 1.09003 * 109.47761 * 58.82522 * 6 5 4 25 25 H 1.08997 * 109.48148 * 178.84593 * 6 5 4 26 26 H 1.08996 * 109.51826 * 177.50724 * 7 6 5 27 27 H 1.08992 * 109.52415 * 297.70457 * 7 6 5 28 28 H 0.96993 * 120.00133 * 179.97438 * 12 11 9 29 29 H 1.08997 * 109.47414 * 65.29985 * 17 8 2 30 30 H 1.09006 * 109.47335 * 185.30073 * 17 8 2 31 31 H 1.00907 * 110.99713 * 173.49184 * 18 17 8 32 32 H 1.00894 * 111.00044 * 297.44882 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4694 -0.7743 -1.2163 6 6 4.0043 -1.4816 -0.0956 7 6 3.5716 -0.7870 1.1982 8 6 2.0418 -0.7252 1.2484 9 6 1.4818 -2.1237 1.2864 10 1 0.8624 -2.4796 0.4763 11 6 1.7600 -2.9489 2.3552 12 7 2.6189 -2.5668 3.2750 13 14 0.9170 -4.6099 2.4971 14 1 0.0021 -4.8008 1.3431 15 1 1.9405 -5.6858 2.5013 16 1 0.1377 -4.6631 3.7601 17 6 1.6012 0.0368 2.4997 18 7 2.0459 1.4337 2.4044 19 1 -0.3633 -1.0276 0.0029 20 1 -0.3634 0.5164 0.8886 21 1 -0.3634 0.5114 -0.8914 22 1 1.7158 -0.1886 -2.1388 23 1 1.6431 -1.7392 -1.2676 24 1 3.6315 -2.5058 -0.1006 25 1 5.0925 -1.4905 -0.1572 26 1 3.9416 -1.3499 2.0551 27 1 3.9780 0.2241 1.2223 28 1 2.8144 -3.1471 4.0272 29 1 0.5146 0.0061 2.5800 30 1 2.0439 -0.4260 3.3818 31 1 1.6774 1.9832 3.1664 32 1 3.0526 1.4912 2.3708 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260978817.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:08 Heat of formation + Delta-G solvation = -75.029504 kcal Electronic energy + Delta-G solvation = -14162.038886 eV Core-core repulsion = 11928.291394 eV Total energy + Delta-G solvation = -2233.747492 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.55137 -36.96984 -34.21836 -33.60124 -31.77778 -28.14336 -27.09616 -25.95857 -22.98435 -22.71861 -20.32425 -17.54232 -16.98010 -16.86861 -16.57840 -15.92674 -15.35169 -15.16803 -14.69452 -14.40206 -13.83030 -13.14269 -12.94110 -12.80935 -12.69017 -12.53768 -12.36996 -12.23311 -11.82830 -11.62789 -11.08839 -10.76642 -10.62277 -10.21841 -9.85257 -9.22362 -7.96579 -6.08465 1.38954 1.45223 1.52422 2.46648 3.23485 3.25722 4.11361 4.35748 4.37617 4.46924 4.59968 4.77370 4.81819 4.92937 4.96284 5.08396 5.15332 5.24657 5.34736 5.48120 5.59695 5.62969 5.64977 5.79111 6.06559 6.13606 6.43810 6.58384 6.63810 6.82716 7.02818 7.56338 9.00429 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030564 B = 0.016706 C = 0.015212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.903058 B = 1675.653651 C = 1840.239594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.099 4.099 3 H 0.063 0.937 4 C 0.071 3.929 5 O -0.406 6.406 6 C 0.078 3.922 7 C -0.135 4.135 8 C 0.079 3.921 9 C -0.502 4.502 10 H 0.051 0.949 11 C 0.026 3.974 12 N -0.904 5.904 13 Si 0.932 3.068 14 H -0.272 1.272 15 H -0.288 1.288 16 H -0.287 1.287 17 C 0.083 3.917 18 N -0.847 5.847 19 H 0.044 0.956 20 H 0.045 0.955 21 H 0.054 0.946 22 H 0.094 0.906 23 H 0.037 0.963 24 H 0.034 0.966 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.255 0.745 29 H 0.035 0.965 30 H 0.027 0.973 31 H 0.332 0.668 32 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 3.557 -3.235 4.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.118 4.118 3 H 0.081 0.919 4 C -0.005 4.005 5 O -0.326 6.326 6 C 0.001 3.999 7 C -0.173 4.173 8 C 0.078 3.922 9 C -0.541 4.541 10 H 0.069 0.931 11 C -0.173 4.173 12 N -0.544 5.544 13 Si 0.760 3.240 14 H -0.197 1.197 15 H -0.214 1.214 16 H -0.213 1.213 17 C -0.047 4.047 18 N -0.376 5.376 19 H 0.063 0.937 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.112 0.888 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.144 0.856 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.049 3.569 -3.901 5.390 hybrid contribution -0.078 -1.450 1.655 2.202 sum -1.128 2.118 -2.246 3.287 Atomic orbital electron populations 1.21548 0.95208 1.00767 1.00429 1.21523 0.95981 0.98755 0.95560 0.91854 1.22635 0.80298 0.99382 0.98221 1.87692 1.21517 1.76910 1.46464 1.22384 0.97011 0.94577 0.85902 1.22097 0.99402 0.97837 0.97995 1.18116 0.91134 0.92346 0.90577 1.21373 1.29791 0.98245 1.04676 0.93075 1.25449 0.95451 1.00198 0.96176 1.69936 1.33964 1.37713 1.12758 0.85905 0.78740 0.81681 0.77677 1.19658 1.21417 1.21304 1.21649 0.97179 0.86349 0.99570 1.58932 1.15108 1.12101 1.51482 0.93733 0.93587 0.92723 0.88834 0.94471 0.94725 0.89832 0.90835 0.94783 0.93508 0.94679 0.95446 0.85626 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 8.63 71.98 0.62 -3.94 16 2 C -0.10 -4.04 2.01 -10.70 -0.02 -4.06 16 3 H 0.06 2.62 7.37 -2.39 -0.02 2.60 16 4 C 0.07 2.79 5.90 72.01 0.42 3.22 16 5 O -0.41 -17.11 10.77 -148.98 -1.60 -18.71 16 6 C 0.08 3.32 6.62 72.01 0.48 3.80 16 7 C -0.14 -6.11 4.60 30.69 0.14 -5.97 16 8 C 0.08 3.58 0.11 -52.81 -0.01 3.58 16 9 C -0.50 -25.12 5.53 25.60 0.14 -24.98 16 10 H 0.05 2.60 5.71 -2.91 -0.02 2.59 16 11 C 0.03 1.34 5.13 84.65 0.43 1.77 16 12 N -0.90 -47.73 9.46 21.45 0.20 -47.53 16 13 Si 0.93 41.89 29.54 68.60 2.03 43.91 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 16 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 17 C 0.08 3.70 4.98 86.30 0.43 4.13 16 18 N -0.85 -31.20 8.52 -186.71 -1.59 -32.79 16 19 H 0.04 1.75 6.50 -2.39 -0.02 1.74 16 20 H 0.05 1.74 6.67 -2.38 -0.02 1.73 16 21 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 22 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 23 H 0.04 1.54 6.82 -2.39 -0.02 1.53 16 24 H 0.03 1.60 7.38 -2.39 -0.02 1.58 16 25 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 26 H 0.07 3.71 6.03 -2.39 -0.01 3.70 16 27 H 0.03 1.46 6.70 -2.39 -0.02 1.44 16 28 H 0.26 13.15 8.31 -92.71 -0.77 12.38 16 29 H 0.03 1.62 6.81 -2.39 -0.02 1.60 16 30 H 0.03 1.38 6.26 -2.38 -0.01 1.36 16 31 H 0.33 10.63 9.08 -89.69 -0.81 9.82 16 32 H 0.33 12.02 7.43 -89.70 -0.67 11.35 16 Total: -1.00 -53.27 238.58 1.33 -51.94 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -0.35 Total: 25.63 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 2.64 Total: -22.45 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -1.39 Total: -80.32 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -1.60 Total: -18.71 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -53.27 1.33 -51.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260978817.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.087 kcal (2) G-P(sol) polarization free energy of solvation -53.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds