Wall clock time and date at job start Mon Mar 30 2020 02:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46060 * 2 1 4 4 C 1.53039 * 109.45955 * 240.03006 * 2 1 3 5 5 C 1.53122 * 109.27423 * 180.80319 * 4 2 1 6 6 H 1.09004 * 109.56856 * 177.58856 * 5 4 2 7 7 O 1.42899 * 109.52238 * 297.74764 * 5 4 2 8 8 C 1.34925 * 116.99871 * 269.68363 * 7 5 4 9 9 H 1.07997 * 119.99960 * 0.02562 * 8 7 5 10 10 C 1.38635 * 119.99769 * 180.02562 * 8 7 5 11 11 N 1.31588 * 120.00081 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00025 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46807 * 179.97438 * 12 10 8 14 14 H 1.48494 * 109.47141 * 300.00110 * 12 10 8 15 15 H 1.48498 * 109.47018 * 60.00157 * 12 10 8 16 16 C 1.53115 * 109.16245 * 57.65649 * 5 4 2 17 17 C 1.53040 * 109.27533 * 302.34466 * 16 5 4 18 18 H 1.08997 * 109.46624 * 299.17049 * 17 16 5 19 19 C 1.53006 * 109.46064 * 179.19325 * 17 16 5 20 20 N 1.46845 * 109.52701 * 59.18287 * 17 16 5 21 21 H 1.09007 * 109.47028 * 300.02184 * 1 2 3 22 22 H 1.08990 * 109.47303 * 60.02519 * 1 2 3 23 23 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.49956 * 60.86360 * 4 2 1 25 25 H 1.08996 * 109.50278 * 300.74559 * 4 2 1 26 26 H 0.97001 * 119.99805 * 179.97438 * 11 10 8 27 27 H 1.09002 * 109.50665 * 62.28129 * 16 5 4 28 28 H 1.09001 * 109.50716 * 182.40567 * 16 5 4 29 29 H 1.09010 * 109.46994 * 60.00070 * 19 17 16 30 30 H 1.08994 * 109.47021 * 179.97438 * 19 17 16 31 31 H 1.08997 * 109.47748 * 300.00272 * 19 17 16 32 32 H 1.00894 * 111.00165 * 174.16470 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5710 -0.7359 -1.2357 6 1 3.9388 -1.2856 -2.1021 7 8 4.0622 0.6053 -1.2771 8 6 4.2898 1.1369 -2.4961 9 1 4.1001 0.5523 -3.3841 10 6 4.7672 2.4336 -2.6087 11 7 4.9988 3.1457 -1.5267 12 14 5.0831 3.1693 -4.2964 13 1 5.5863 4.5582 -4.1446 14 1 6.0951 2.3511 -5.0116 15 1 3.8185 3.1839 -5.0747 16 6 4.0548 -1.4187 0.0466 17 6 3.4865 -0.6777 1.2590 18 1 3.8402 0.3533 1.2531 19 6 3.9511 -1.3687 2.5426 20 7 2.0193 -0.6918 1.1994 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 0.5134 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.6894 -0.1980 -2.1399 25 1 1.6659 -1.7446 -1.2577 26 1 5.3332 4.0528 -1.6055 27 1 3.7125 -2.4535 0.0593 28 1 5.1440 -1.3946 0.0830 29 1 5.0402 -1.3575 2.5875 30 1 3.5468 -0.8408 3.4062 31 1 3.5979 -2.3998 2.5486 32 1 1.6196 -0.2926 2.0353 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261032193.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:26 Heat of formation + Delta-G solvation = -50.306341 kcal Electronic energy + Delta-G solvation = -13508.518928 eV Core-core repulsion = 11275.843513 eV Total energy + Delta-G solvation = -2232.675415 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.63548 -35.51312 -32.91299 -31.88230 -30.02851 -27.66530 -25.73646 -24.41753 -21.60602 -20.44027 -18.88501 -17.26517 -15.62313 -15.09757 -14.84873 -14.00791 -13.90026 -13.69435 -12.79157 -12.46333 -12.27169 -11.89536 -11.55604 -11.30290 -11.17826 -11.12238 -10.99016 -10.93993 -10.45430 -10.28760 -10.15892 -9.60120 -9.25404 -9.01443 -7.94627 -7.77666 -5.91870 -3.53800 3.32487 3.34699 3.37436 4.33706 4.66253 5.32100 5.36769 5.50228 5.58016 5.66166 5.81349 5.88152 5.93453 6.06290 6.13424 6.27331 6.30852 6.32818 6.35462 6.48629 6.57667 6.73079 6.79385 6.84400 6.93467 7.15638 7.49797 7.69340 7.96145 8.46850 9.52361 10.23042 11.29263 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040450 B = 0.010728 C = 0.009730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.043586 B = 2609.258594 C = 2877.105395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.054 0.946 4 C -0.125 4.125 5 C 0.091 3.909 6 H 0.037 0.963 7 O -0.284 6.284 8 C -0.355 4.355 9 H 0.060 0.940 10 C 0.022 3.978 11 N -0.891 5.891 12 Si 0.921 3.079 13 H -0.284 1.284 14 H -0.279 1.279 15 H -0.279 1.279 16 C -0.100 4.100 17 C 0.086 3.914 18 H 0.055 0.945 19 C -0.142 4.142 20 N -0.683 5.683 21 H 0.046 0.954 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.257 0.743 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.129 -7.063 3.971 9.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 H 0.072 0.928 4 C -0.163 4.163 5 C 0.031 3.969 6 H 0.056 0.944 7 O -0.199 6.199 8 C -0.435 4.435 9 H 0.077 0.923 10 C -0.176 4.176 11 N -0.535 5.535 12 Si 0.749 3.251 13 H -0.210 1.210 14 H -0.205 1.205 15 H -0.205 1.205 16 C -0.138 4.138 17 C -0.023 4.023 18 H 0.073 0.927 19 C -0.200 4.200 20 N -0.315 5.315 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.056 -7.413 3.884 9.777 hybrid contribution 0.256 1.215 -0.879 1.521 sum -4.800 -6.198 3.005 8.396 Atomic orbital electron populations 1.21809 0.95641 1.01429 1.01023 1.21310 0.93418 0.97019 0.90339 0.92755 1.22061 0.97983 0.99301 0.96963 1.21815 0.91904 0.87598 0.95534 0.94450 1.85675 1.82912 1.22832 1.28449 1.20825 1.42461 0.97189 0.83010 0.92262 1.24899 0.99047 0.95869 0.97768 1.70003 1.46880 1.09717 1.26873 0.86103 0.78404 0.78371 0.82268 1.20967 1.20466 1.20490 1.21641 0.99982 0.98048 0.94169 1.21344 0.87316 0.99240 0.94425 0.92709 1.21819 1.00712 1.00672 0.96766 1.60500 1.07286 1.59238 1.04494 0.93475 0.92491 0.92588 0.91889 0.92562 0.93334 0.91785 0.91755 0.92442 0.93391 0.92512 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.43 37.16 0.35 -1.81 16 2 C 0.09 1.67 2.90 -67.72 -0.20 1.47 16 3 H 0.05 1.25 7.76 -51.93 -0.40 0.84 16 4 C -0.12 -2.48 5.07 -26.65 -0.14 -2.62 16 5 C 0.09 2.04 2.98 -26.61 -0.08 1.96 16 6 H 0.04 0.83 7.80 -51.93 -0.41 0.43 16 7 O -0.28 -7.98 8.28 -16.50 -0.14 -8.12 16 8 C -0.36 -10.41 9.78 30.88 0.30 -10.11 16 9 H 0.06 1.65 7.64 -52.49 -0.40 1.25 16 10 C 0.02 0.65 5.49 -17.51 -0.10 0.55 16 11 N -0.89 -27.97 13.68 55.48 0.76 -27.21 16 12 Si 0.92 22.28 29.55 -169.99 -5.02 17.26 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 C -0.10 -1.93 5.10 -26.65 -0.14 -2.07 16 17 C 0.09 1.58 2.90 -67.72 -0.20 1.39 16 18 H 0.05 1.22 7.76 -51.93 -0.40 0.82 16 19 C -0.14 -2.08 9.43 37.16 0.35 -1.72 16 20 N -0.68 -11.70 6.16 -99.77 -0.61 -12.32 16 21 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.33 5.05 8.68 -39.30 -0.34 4.71 16 LS Contribution 261.47 15.07 3.94 3.94 Total: -1.00 -31.64 261.47 -6.23 -37.86 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.32 Total: 1.54 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 0.16 Total: -12.96 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.14 Total: -39.53 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.14 Total: -8.12 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.64 -6.23 -37.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032193.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.443 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds