Wall clock time and date at job start Mon Mar 30 2020 02:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.46628 * 2 1 4 4 C 1.53045 * 109.46212 * 119.97903 * 2 1 3 5 5 C 1.53121 * 109.27412 * 60.83739 * 4 2 1 6 6 O 1.42900 * 109.51961 * 177.56091 * 5 4 2 7 7 C 1.34922 * 117.00165 * 150.12783 * 6 5 4 8 8 H 1.08001 * 120.00176 * 359.97438 * 7 6 5 9 9 C 1.38636 * 120.00046 * 179.97438 * 7 6 5 10 10 N 1.31584 * 120.00267 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00060 * 179.72210 * 9 7 6 12 12 H 1.48502 * 109.47271 * 270.27936 * 11 9 7 13 13 H 1.48505 * 109.46880 * 30.27416 * 11 9 7 14 14 H 1.48490 * 109.47245 * 150.27743 * 11 9 7 15 15 C 1.53114 * 109.21652 * 57.62301 * 5 4 2 16 16 C 1.53044 * 109.27699 * 302.44108 * 15 5 4 17 17 H 1.08999 * 109.40681 * 299.06728 * 16 15 5 18 18 C 1.52998 * 109.46595 * 179.13171 * 16 15 5 19 19 N 1.46847 * 109.57480 * 59.07998 * 16 15 5 20 20 H 1.08996 * 109.47200 * 300.02155 * 1 2 3 21 21 H 1.09002 * 109.47284 * 60.02445 * 1 2 3 22 22 H 1.09003 * 109.47445 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.50323 * 300.89590 * 4 2 1 24 24 H 1.08996 * 109.50084 * 180.77515 * 4 2 1 25 25 H 1.08993 * 109.52244 * 297.68280 * 5 4 2 26 26 H 0.97005 * 119.99693 * 359.72009 * 10 9 7 27 27 H 1.09003 * 109.50123 * 62.31680 * 15 5 4 28 28 H 1.08996 * 109.50714 * 182.43221 * 15 5 4 29 29 H 1.09000 * 109.46728 * 299.88209 * 18 16 15 30 30 H 1.08994 * 109.47109 * 59.87824 * 18 16 15 31 31 H 1.08996 * 109.47104 * 179.87869 * 18 16 15 32 32 H 1.00899 * 110.99714 * 174.19577 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 1.5442 -2.1697 1.2353 6 8 2.0641 -2.8638 2.3711 7 6 1.3139 -3.8669 2.8723 8 1 0.3664 -4.1127 2.4158 9 6 1.7591 -4.5822 3.9732 10 7 2.9132 -4.2825 4.5298 11 14 0.7168 -5.9661 4.6718 12 1 -0.2033 -5.4211 5.7023 13 1 -0.0752 -6.5886 3.5807 14 1 1.6000 -6.9885 5.2878 15 6 2.0255 -2.8541 -0.0470 16 6 1.5174 -2.0704 -1.2593 17 1 0.4274 -2.0606 -1.2534 18 6 2.0140 -2.7384 -2.5430 19 7 2.0193 -0.6916 -1.1994 20 1 -0.3633 0.5141 0.8897 21 1 -0.3634 0.5135 -0.8902 22 1 -0.3634 -1.0277 0.0005 23 1 1.6637 -0.2167 2.1399 24 1 3.1297 -0.7094 1.2575 25 1 0.4548 -2.1823 1.2681 26 1 3.4543 -3.5637 4.1672 27 1 3.1152 -2.8770 -0.0603 28 1 1.6391 -3.8727 -0.0830 29 1 3.1040 -2.7479 -2.5494 30 1 1.6416 -3.7618 -2.5876 31 1 1.6504 -2.1815 -3.4065 32 1 1.7760 -0.1817 -2.0354 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261032203.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:59 Heat of formation + Delta-G solvation = -53.013275 kcal Electronic energy + Delta-G solvation = -13428.132303 eV Core-core repulsion = 11195.339506 eV Total energy + Delta-G solvation = -2232.792797 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.15755 -35.97455 -32.90768 -31.91764 -29.92908 -27.70466 -26.22742 -23.99355 -21.92259 -21.13635 -18.46312 -17.81158 -16.22974 -15.16989 -14.82356 -14.16507 -13.91728 -13.61766 -13.39575 -12.97942 -12.28715 -12.23957 -12.14228 -11.53774 -11.28624 -11.07346 -11.00994 -10.61099 -10.56385 -10.14776 -9.87065 -9.79381 -9.33289 -9.02669 -8.21352 -7.88813 -6.22849 -3.53152 3.42205 3.48501 3.62734 4.33745 4.47027 5.06104 5.14020 5.17013 5.33876 5.42038 5.52347 5.57083 5.69478 5.80827 5.89218 5.95803 5.99882 6.09624 6.18032 6.30693 6.37306 6.51620 6.58421 6.69327 6.89056 7.03507 7.32210 7.61386 7.74922 8.91373 9.51853 10.17805 11.25247 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.046749 B = 0.009398 C = 0.008819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.798909 B = 2978.735300 C = 3174.302032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.089 3.911 3 H 0.080 0.920 4 C -0.108 4.108 5 C 0.107 3.893 6 O -0.311 6.311 7 C -0.444 4.444 8 H 0.050 0.950 9 C -0.010 4.010 10 N -0.916 5.916 11 Si 1.091 2.909 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.129 4.129 16 C 0.082 3.918 17 H 0.037 0.963 18 C -0.143 4.143 19 N -0.678 5.678 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.275 0.725 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 6.164 -11.377 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.021 4.021 3 H 0.098 0.902 4 C -0.146 4.146 5 C 0.048 3.952 6 O -0.227 6.227 7 C -0.523 4.523 8 H 0.068 0.932 9 C -0.210 4.210 10 N -0.555 5.555 11 Si 0.919 3.081 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.206 1.206 15 C -0.167 4.167 16 C -0.028 4.028 17 H 0.055 0.945 18 C -0.201 4.201 19 N -0.309 5.309 20 H 0.080 0.920 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.844 4.865 -9.822 11.616 hybrid contribution -1.222 1.306 -1.685 2.457 sum -5.067 6.171 -11.507 14.006 Atomic orbital electron populations 1.22596 0.98135 1.02566 1.01573 1.21494 0.92211 0.97442 0.90928 0.90202 1.21621 1.01882 0.95443 0.95635 1.21674 0.95761 0.90664 0.87104 1.85372 1.46581 1.48092 1.42659 1.21737 1.02785 1.12367 1.15434 0.93207 1.26006 0.99298 1.01717 0.93947 1.70530 1.11659 1.31532 1.41818 0.83147 0.74340 0.75011 0.75613 1.21574 1.21710 1.20645 1.22155 1.02004 0.98709 0.93821 1.21507 0.96593 0.88692 0.95968 0.94496 1.21807 1.02198 1.00067 0.96015 1.60531 1.63344 1.02653 1.04398 0.92025 0.93302 0.91805 0.91652 0.91034 0.94538 0.91474 0.91310 0.91817 0.91854 0.92247 0.93345 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.60 8.58 37.15 0.32 -2.28 16 2 C 0.09 1.33 3.68 -67.72 -0.25 1.08 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.11 -2.06 5.27 -26.65 -0.14 -2.20 16 5 C 0.11 2.42 2.41 -26.61 -0.06 2.36 16 6 O -0.31 -9.05 8.83 -16.49 -0.15 -9.19 16 7 C -0.44 -13.42 9.78 30.88 0.30 -13.12 16 8 H 0.05 1.46 7.65 -52.49 -0.40 1.05 16 9 C -0.01 -0.30 5.49 -17.51 -0.10 -0.39 16 10 N -0.92 -29.79 13.70 55.48 0.76 -29.03 16 11 Si 1.09 26.18 29.92 -169.99 -5.09 21.09 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C -0.13 -2.58 5.00 -26.65 -0.13 -2.72 16 16 C 0.08 1.27 2.74 -67.72 -0.19 1.09 16 17 H 0.04 0.57 6.19 -51.93 -0.32 0.25 16 18 C -0.14 -1.87 9.43 37.16 0.35 -1.52 16 19 N -0.68 -9.80 6.31 -99.77 -0.63 -10.43 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.98 4.80 -51.93 -0.25 0.73 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 25 H 0.04 0.84 6.22 -51.93 -0.32 0.51 16 26 H 0.28 9.19 7.97 -40.82 -0.33 8.86 16 27 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.33 3.96 8.79 -39.29 -0.35 3.61 16 LS Contribution 255.50 15.07 3.85 3.85 Total: -1.00 -33.02 255.50 -6.14 -39.16 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.99 Total: 2.27 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 0.10 Total: -17.71 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.13 Total: -39.47 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.15 Total: -9.19 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.09 Total: 21.09 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -33.02 -6.14 -39.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032203.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.852 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds