Wall clock time and date at job start Mon Mar 30 2020 02:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.46628 * 2 1 4 4 C 1.53045 * 109.46212 * 119.97903 * 2 1 3 5 5 C 1.53121 * 109.27412 * 60.83739 * 4 2 1 6 6 O 1.42900 * 109.51961 * 177.56091 * 5 4 2 7 7 C 1.34922 * 117.00165 * 150.12783 * 6 5 4 8 8 H 1.08001 * 120.00176 * 359.97438 * 7 6 5 9 9 C 1.38636 * 120.00046 * 179.97438 * 7 6 5 10 10 N 1.31584 * 120.00267 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00060 * 179.72210 * 9 7 6 12 12 H 1.48502 * 109.47271 * 270.27936 * 11 9 7 13 13 H 1.48505 * 109.46880 * 30.27416 * 11 9 7 14 14 H 1.48490 * 109.47245 * 150.27743 * 11 9 7 15 15 C 1.53114 * 109.21652 * 57.62301 * 5 4 2 16 16 C 1.53044 * 109.27699 * 302.44108 * 15 5 4 17 17 H 1.08999 * 109.40681 * 299.06728 * 16 15 5 18 18 C 1.52998 * 109.46595 * 179.13171 * 16 15 5 19 19 N 1.46847 * 109.57480 * 59.07998 * 16 15 5 20 20 H 1.08996 * 109.47200 * 300.02155 * 1 2 3 21 21 H 1.09002 * 109.47284 * 60.02445 * 1 2 3 22 22 H 1.09003 * 109.47445 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.50323 * 300.89590 * 4 2 1 24 24 H 1.08996 * 109.50084 * 180.77515 * 4 2 1 25 25 H 1.08993 * 109.52244 * 297.68280 * 5 4 2 26 26 H 0.97005 * 119.99693 * 359.72009 * 10 9 7 27 27 H 1.09003 * 109.50123 * 62.31680 * 15 5 4 28 28 H 1.08996 * 109.50714 * 182.43221 * 15 5 4 29 29 H 1.09000 * 109.46728 * 299.88209 * 18 16 15 30 30 H 1.08994 * 109.47109 * 59.87824 * 18 16 15 31 31 H 1.08996 * 109.47104 * 179.87869 * 18 16 15 32 32 H 1.00899 * 110.99714 * 174.19577 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 1.5442 -2.1697 1.2353 6 8 2.0641 -2.8638 2.3711 7 6 1.3139 -3.8669 2.8723 8 1 0.3664 -4.1127 2.4158 9 6 1.7591 -4.5822 3.9732 10 7 2.9132 -4.2825 4.5298 11 14 0.7168 -5.9661 4.6718 12 1 -0.2033 -5.4211 5.7023 13 1 -0.0752 -6.5886 3.5807 14 1 1.6000 -6.9885 5.2878 15 6 2.0255 -2.8541 -0.0470 16 6 1.5174 -2.0704 -1.2593 17 1 0.4274 -2.0606 -1.2534 18 6 2.0140 -2.7384 -2.5430 19 7 2.0193 -0.6916 -1.1994 20 1 -0.3633 0.5141 0.8897 21 1 -0.3634 0.5135 -0.8902 22 1 -0.3634 -1.0277 0.0005 23 1 1.6637 -0.2167 2.1399 24 1 3.1297 -0.7094 1.2575 25 1 0.4548 -2.1823 1.2681 26 1 3.4543 -3.5637 4.1672 27 1 3.1152 -2.8770 -0.0603 28 1 1.6391 -3.8727 -0.0830 29 1 3.1040 -2.7479 -2.5494 30 1 1.6416 -3.7618 -2.5876 31 1 1.6504 -2.1815 -3.4065 32 1 1.7760 -0.1817 -2.0354 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261032203.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:58 Heat of formation + Delta-G solvation = -77.321402 kcal Electronic energy + Delta-G solvation = -13429.186383 eV Core-core repulsion = 11195.339506 eV Total energy + Delta-G solvation = -2233.846876 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.63449 -37.96953 -34.22477 -34.02244 -31.72194 -28.85680 -27.60361 -26.28728 -23.52013 -22.52007 -20.23468 -19.71038 -17.65192 -16.92737 -16.44293 -15.87240 -15.63386 -15.44609 -14.88004 -14.38830 -13.72456 -13.61306 -13.41611 -13.05343 -12.73799 -12.68492 -12.47233 -12.33336 -11.93540 -11.89710 -11.78433 -11.57973 -11.16617 -10.99185 -10.14874 -9.39079 -8.67144 -5.95276 1.49118 1.62507 1.78021 2.49665 3.15554 3.17097 3.44863 3.79359 3.86993 4.03227 4.13671 4.24122 4.36205 4.41925 4.48849 4.57651 4.74792 4.82127 4.88825 4.98490 5.02408 5.09299 5.14540 5.21660 5.27011 5.36237 5.43645 6.05472 6.44854 6.59412 7.18408 7.93165 8.81919 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.046749 B = 0.009398 C = 0.008819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.798909 B = 2978.735300 C = 3174.302032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.097 3.903 3 H 0.108 0.892 4 C -0.104 4.104 5 C 0.096 3.904 6 O -0.352 6.352 7 C -0.450 4.450 8 H 0.054 0.946 9 C -0.069 4.069 10 N -0.943 5.943 11 Si 1.142 2.858 12 H -0.269 1.269 13 H -0.266 1.266 14 H -0.277 1.277 15 C -0.122 4.122 16 C 0.091 3.909 17 H 0.044 0.956 18 C -0.138 4.138 19 N -0.681 5.681 20 H 0.062 0.938 21 H 0.080 0.920 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.253 0.747 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.072 6.694 -13.039 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.013 4.013 3 H 0.126 0.874 4 C -0.143 4.143 5 C 0.038 3.962 6 O -0.269 6.269 7 C -0.529 4.529 8 H 0.072 0.928 9 C -0.261 4.261 10 N -0.584 5.584 11 Si 0.961 3.039 12 H -0.195 1.195 13 H -0.190 1.190 14 H -0.203 1.203 15 C -0.160 4.160 16 C -0.019 4.019 17 H 0.062 0.938 18 C -0.195 4.195 19 N -0.314 5.314 20 H 0.081 0.919 21 H 0.099 0.901 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.374 5.436 -11.536 13.839 hybrid contribution -0.732 1.225 -1.228 1.883 sum -6.106 6.661 -12.764 15.639 Atomic orbital electron populations 1.22537 0.96844 1.01725 1.03244 1.21449 0.93116 0.97897 0.88857 0.87427 1.21625 1.00787 0.93610 0.98237 1.22067 0.95589 0.92330 0.86257 1.85323 1.47904 1.48394 1.45295 1.22112 1.02868 1.12494 1.15426 0.92810 1.27978 0.99630 1.04112 0.94383 1.70696 1.13059 1.31805 1.42819 0.82571 0.73281 0.71970 0.76094 1.19498 1.19023 1.20265 1.22038 1.00536 0.98447 0.95005 1.21376 0.96814 0.89013 0.94719 0.93785 1.21764 1.01778 1.00427 0.95566 1.60409 1.63518 1.02227 1.05256 0.91899 0.90148 0.93820 0.92309 0.92749 0.94987 0.93847 0.93372 0.93654 0.92520 0.92097 0.90229 0.82285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.56 8.58 71.98 0.62 -3.94 16 2 C 0.10 2.66 3.68 44.94 0.17 2.82 16 3 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 4 C -0.10 -4.03 5.27 30.65 0.16 -3.87 16 5 C 0.10 4.43 2.41 30.67 0.07 4.51 16 6 O -0.35 -21.34 8.83 -81.91 -0.72 -22.06 16 7 C -0.45 -27.88 9.78 67.92 0.66 -27.22 16 8 H 0.05 3.19 7.65 -2.91 -0.02 3.17 16 9 C -0.07 -4.27 5.49 84.83 0.47 -3.81 16 10 N -0.94 -63.14 13.70 21.61 0.30 -62.84 16 11 Si 1.14 52.31 29.92 68.60 2.05 54.36 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 14 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 15 C -0.12 -4.98 5.00 30.65 0.15 -4.82 16 16 C 0.09 2.65 2.74 44.94 0.12 2.78 16 17 H 0.04 1.26 6.19 -2.39 -0.01 1.25 16 18 C -0.14 -3.25 9.43 71.98 0.68 -2.57 16 19 N -0.68 -17.80 6.31 -469.57 -2.96 -20.76 16 20 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.04 1.25 4.80 -2.39 -0.01 1.24 16 23 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.03 1.50 6.22 -2.39 -0.01 1.48 16 26 H 0.25 17.71 7.97 -92.70 -0.74 16.97 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.36 6.91 8.79 -89.69 -0.79 6.13 16 Total: -1.00 -73.89 255.50 2.10 -71.79 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.34 Total: 15.63 kcal Atomic # 6 Polarization: -39.22 SS G_CDS: 3.10 Total: -36.12 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -2.67 Total: -83.60 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.72 Total: -22.06 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 2.05 Total: 54.36 kcal Total: -73.89 2.10 -71.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032203.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.533 kcal (2) G-P(sol) polarization free energy of solvation -73.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds