Wall clock time and date at job start Mon Mar 30 2020 02:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.46189 * 2 1 4 4 C 1.53029 * 109.46292 * 240.01910 * 2 1 3 5 5 C 1.53123 * 109.27971 * 180.81507 * 4 2 1 6 6 H 1.09002 * 109.52369 * 177.62155 * 5 4 2 7 7 O 1.42900 * 109.52287 * 297.74869 * 5 4 2 8 8 C 1.34923 * 117.00305 * 209.99809 * 7 5 4 9 9 H 1.08004 * 119.99584 * 359.97438 * 8 7 5 10 10 C 1.38630 * 120.00219 * 180.02562 * 8 7 5 11 11 N 1.31584 * 120.00278 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00179 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 59.99657 * 12 10 8 14 14 H 1.48503 * 109.47261 * 299.99838 * 12 10 8 15 15 H 1.48500 * 109.47454 * 179.97438 * 12 10 8 16 16 C 1.53123 * 109.15776 * 57.65265 * 5 4 2 17 17 C 1.53039 * 109.27990 * 302.34811 * 16 5 4 18 18 N 1.46842 * 109.52357 * 59.17738 * 17 16 5 19 19 C 1.46895 * 111.00174 * 174.15948 * 18 17 16 20 20 H 1.09006 * 109.47306 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47621 * 299.98187 * 1 2 3 22 22 H 1.09002 * 109.47289 * 59.97937 * 1 2 3 23 23 H 1.08994 * 109.50756 * 60.87436 * 4 2 1 24 24 H 1.09004 * 109.54100 * 300.77330 * 4 2 1 25 25 H 0.97001 * 119.99415 * 0.02562 * 11 10 8 26 26 H 1.09002 * 109.50441 * 62.28934 * 16 5 4 27 27 H 1.09001 * 109.50012 * 182.40571 * 16 5 4 28 28 H 1.09003 * 109.45771 * 299.16561 * 17 16 5 29 29 H 1.08996 * 109.44797 * 179.19556 * 17 16 5 30 30 H 1.08999 * 109.47398 * 184.21318 * 19 18 17 31 31 H 1.09004 * 109.47263 * 304.21679 * 19 18 17 32 32 H 1.09005 * 109.46752 * 64.21216 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2498 5 6 3.5709 -0.7364 -1.2353 6 1 3.9379 -1.2858 -2.1022 7 8 4.0624 0.6048 -1.2768 8 6 5.2561 0.8016 -1.8741 9 1 5.7947 -0.0355 -2.2933 10 6 5.7918 2.0780 -1.9489 11 7 5.1359 3.0978 -1.4377 12 14 7.4441 2.3506 -2.7764 13 1 7.3671 1.9103 -4.1926 14 1 8.4873 1.5646 -2.0698 15 1 7.7914 3.7935 -2.7253 16 6 4.0545 -1.4191 0.0472 17 6 3.4861 -0.6778 1.2594 18 7 2.0190 -0.6916 1.1995 19 6 1.4369 -0.1103 2.4165 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5135 0.8901 22 1 -0.3634 0.5142 -0.8898 23 1 1.6896 -0.1984 -2.1398 24 1 1.6658 -1.7448 -1.2582 25 1 4.2777 2.9563 -1.0083 26 1 3.7121 -2.4539 0.0600 27 1 5.1436 -1.3951 0.0837 28 1 3.8402 0.3531 1.2534 29 1 3.8171 -1.1702 2.1738 30 1 0.3513 -0.2008 2.3791 31 1 1.8159 -0.6411 3.2899 32 1 1.7117 0.9424 2.4836 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261077421.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:22 Heat of formation + Delta-G solvation = -44.560468 kcal Electronic energy + Delta-G solvation = -13604.250336 eV Core-core repulsion = 11371.824080 eV Total energy + Delta-G solvation = -2232.426256 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.93155 -35.99606 -32.45106 -31.93266 -30.69269 -26.83906 -25.71086 -23.90000 -22.35138 -20.74831 -19.07125 -17.58860 -15.44296 -15.02678 -14.80206 -14.36536 -14.05755 -13.72060 -13.37961 -12.90393 -12.21673 -11.83935 -11.75159 -11.55229 -11.35784 -11.18873 -10.94592 -10.52632 -10.39976 -10.14522 -9.93256 -9.70767 -9.32400 -9.03995 -7.93363 -7.82922 -6.24633 -3.54616 3.41496 3.46035 3.63679 4.33286 4.48043 5.22148 5.31753 5.41080 5.50719 5.54562 5.73428 5.78280 5.81400 5.90451 5.95474 6.01279 6.11051 6.16097 6.28347 6.30906 6.43754 6.59061 6.66281 6.71577 6.81099 6.98595 7.54206 7.57389 7.73841 8.88756 9.49924 10.15512 11.23014 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050225 B = 0.009889 C = 0.009769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.362303 B = 2830.691798 C = 2865.486814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.053 0.947 4 C -0.103 4.103 5 C 0.100 3.900 6 H 0.040 0.960 7 O -0.308 6.308 8 C -0.442 4.442 9 H 0.051 0.949 10 C -0.009 4.009 11 N -0.916 5.916 12 Si 1.088 2.912 13 H -0.290 1.290 14 H -0.290 1.290 15 H -0.279 1.279 16 C -0.132 4.132 17 C 0.065 3.935 18 N -0.540 5.540 19 C 0.023 3.977 20 H 0.058 0.942 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.273 0.727 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.052 -7.300 3.905 10.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 H 0.071 0.929 4 C -0.140 4.140 5 C 0.041 3.959 6 H 0.058 0.942 7 O -0.224 6.224 8 C -0.522 4.522 9 H 0.068 0.932 10 C -0.209 4.209 11 N -0.556 5.556 12 Si 0.915 3.085 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.170 4.170 17 C -0.063 4.063 18 N -0.265 5.265 19 C -0.126 4.126 20 H 0.077 0.923 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.180 -6.478 3.546 9.021 hybrid contribution -0.689 -0.693 0.397 1.054 sum -5.869 -7.171 3.942 10.070 Atomic orbital electron populations 1.21927 0.95317 1.01740 1.01305 1.21497 0.93943 0.96871 0.90028 0.92902 1.21681 0.95502 1.00003 0.96860 1.21710 0.92368 0.86838 0.94990 0.94224 1.85368 1.36796 1.21870 1.78375 1.21728 0.96405 0.96074 1.37969 0.93170 1.25977 1.05034 0.90315 0.99592 1.70581 1.16386 1.31755 1.36877 0.83203 0.73471 0.76374 0.75406 1.21647 1.21662 1.20412 1.22042 1.00397 0.98439 0.96160 1.21899 0.86418 1.00203 0.97749 1.62038 1.07873 1.54639 1.01940 1.22370 1.00089 0.97379 0.92731 0.92334 0.92898 0.92430 0.91613 0.91442 0.91727 0.92287 0.91597 0.93605 0.92122 0.91463 0.92089 0.95875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.77 37.16 0.33 -1.79 16 2 C 0.08 1.55 2.31 -67.73 -0.16 1.40 16 3 H 0.05 1.16 7.76 -51.93 -0.40 0.76 16 4 C -0.10 -1.95 5.10 -26.65 -0.14 -2.09 16 5 C 0.10 2.25 2.98 -26.60 -0.08 2.17 16 6 H 0.04 0.90 7.80 -51.93 -0.41 0.49 16 7 O -0.31 -8.63 7.69 -16.49 -0.13 -8.76 16 8 C -0.44 -13.12 9.78 30.88 0.30 -12.82 16 9 H 0.05 1.44 7.64 -52.48 -0.40 1.04 16 10 C -0.01 -0.28 5.49 -17.51 -0.10 -0.38 16 11 N -0.92 -29.39 13.70 55.48 0.76 -28.63 16 12 Si 1.09 25.91 29.92 -169.99 -5.09 20.83 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C -0.13 -2.63 5.79 -26.65 -0.15 -2.79 16 17 C 0.06 1.25 5.33 -3.84 -0.02 1.23 16 18 N -0.54 -9.44 4.75 -234.94 -1.11 -10.56 16 19 C 0.02 0.34 9.05 60.06 0.54 0.88 16 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.05 0.71 6.32 -51.93 -0.33 0.38 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.27 8.97 7.97 -40.82 -0.33 8.65 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.05 1.04 7.76 -51.93 -0.40 0.64 16 29 H 0.06 1.03 8.09 -51.93 -0.42 0.61 16 30 H 0.07 0.87 6.21 -51.93 -0.32 0.55 16 31 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 256.61 15.07 3.87 3.87 Total: -1.00 -32.27 256.61 -6.35 -38.62 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -5.18 Total: -1.18 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 0.53 Total: -14.20 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: -0.35 Total: -39.19 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.13 Total: -8.76 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.09 Total: 20.83 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.27 -6.35 -38.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077421.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.937 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds