Wall clock time and date at job start Mon Mar 30 2020 02:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.45215 * 2 1 4 4 C 1.53037 * 109.46471 * 119.97163 * 2 1 3 5 5 C 1.53114 * 109.31211 * 179.21882 * 4 2 1 6 6 H 1.09006 * 109.52545 * 62.23190 * 5 4 2 7 7 O 1.42894 * 109.52614 * 182.42073 * 5 4 2 8 8 C 1.34925 * 117.00645 * 209.99878 * 7 5 4 9 9 H 1.08008 * 119.99637 * 0.02562 * 8 7 5 10 10 C 1.38635 * 120.00601 * 180.02562 * 8 7 5 11 11 N 1.31575 * 120.00429 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99556 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46987 * 90.00380 * 12 10 8 14 14 H 1.48507 * 109.46879 * 210.00112 * 12 10 8 15 15 H 1.48497 * 109.47447 * 330.00295 * 12 10 8 16 16 C 1.53126 * 109.16239 * 302.32855 * 5 4 2 17 17 C 1.53037 * 109.27880 * 57.65311 * 16 5 4 18 18 N 1.46850 * 109.52028 * 300.82273 * 17 16 5 19 19 C 1.46900 * 110.99740 * 185.83738 * 18 17 16 20 20 H 1.08999 * 109.47568 * 300.02393 * 1 2 3 21 21 H 1.08997 * 109.47253 * 60.02734 * 1 2 3 22 22 H 1.09007 * 109.46539 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.50283 * 59.25699 * 4 2 1 24 24 H 1.09003 * 109.50113 * 299.17886 * 4 2 1 25 25 H 0.96998 * 120.00489 * 180.02562 * 11 10 8 26 26 H 1.08997 * 109.50509 * 177.59319 * 16 5 4 27 27 H 1.08997 * 109.49757 * 297.67568 * 16 5 4 28 28 H 1.08997 * 109.46525 * 60.83781 * 17 16 5 29 29 H 1.08999 * 109.46457 * 180.82041 * 17 16 5 30 30 H 1.09003 * 109.47044 * 63.95724 * 19 18 17 31 31 H 1.09002 * 109.47538 * 183.95397 * 19 18 17 32 32 H 1.09005 * 109.47410 * 303.95932 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 3.5710 -0.7359 1.2366 6 1 3.9456 0.2873 1.2682 7 8 4.0514 -1.4569 2.3729 8 6 5.2456 -1.0817 2.8765 9 1 5.7922 -0.2689 2.4214 10 6 5.7710 -1.7393 3.9781 11 7 6.9352 -1.3731 4.4695 12 14 4.8251 -3.1446 4.7656 13 1 5.2176 -4.4257 4.1252 14 1 5.1379 -3.2002 6.2163 15 1 3.3680 -2.9252 4.5815 16 6 4.0558 -1.4189 -0.0453 17 6 3.4882 -0.6781 -1.2582 18 7 2.0209 -0.6923 -1.1994 19 6 1.4397 -0.1114 -2.4171 20 1 -0.3634 0.5142 0.8897 21 1 -0.3633 0.5134 -0.8902 22 1 -0.3633 -1.0278 0.0005 23 1 1.6660 -1.7447 1.2576 24 1 1.6889 -0.1985 2.1399 25 1 7.3030 -1.8334 5.2400 26 1 5.1449 -1.3947 -0.0810 27 1 3.7141 -2.4538 -0.0576 28 1 3.8419 0.3529 -1.2523 29 1 3.8196 -1.1706 -2.1723 30 1 1.7026 -0.7293 -3.2757 31 1 0.3550 -0.0698 -2.3179 32 1 1.8303 0.8960 -2.5613 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261077423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:25 Heat of formation + Delta-G solvation = -59.734436 kcal Electronic energy + Delta-G solvation = -13305.246135 eV Core-core repulsion = 11072.161887 eV Total energy + Delta-G solvation = -2233.084248 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.46554 -38.16948 -34.39757 -33.38499 -33.10154 -28.34407 -27.21516 -26.07608 -23.79618 -22.11222 -20.85474 -19.68190 -17.67506 -16.73205 -16.44010 -15.85515 -15.59767 -15.47677 -14.91440 -14.17850 -14.12970 -13.75188 -13.33870 -13.06515 -12.89861 -12.75737 -12.66688 -12.33874 -12.18819 -11.98229 -11.79821 -11.38032 -11.32441 -11.10269 -10.32654 -9.28092 -8.27828 -5.97158 1.36977 1.40743 1.59728 2.43387 2.93351 3.04667 3.26338 3.86814 3.91870 4.05887 4.18572 4.34483 4.39065 4.53492 4.56413 4.63242 4.71082 4.80212 4.90900 4.97355 4.99778 5.06657 5.12592 5.26035 5.31794 5.40521 5.59707 6.11208 6.14083 6.20720 7.11610 7.82172 8.88335 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057072 B = 0.009082 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.492984 B = 3082.140261 C = 3316.445706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 H 0.036 0.964 4 C -0.102 4.102 5 C 0.096 3.904 6 H 0.026 0.974 7 O -0.341 6.341 8 C -0.353 4.353 9 H 0.045 0.955 10 C -0.016 4.016 11 N -0.955 5.955 12 Si 0.975 3.025 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.263 1.263 16 C -0.131 4.131 17 C 0.069 3.931 18 N -0.549 5.549 19 C 0.019 3.981 20 H 0.068 0.932 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.274 0.726 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 1.888 -12.070 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 H 0.054 0.946 4 C -0.140 4.140 5 C 0.038 3.962 6 H 0.045 0.955 7 O -0.257 6.257 8 C -0.431 4.431 9 H 0.063 0.937 10 C -0.209 4.209 11 N -0.602 5.602 12 Si 0.800 3.200 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.187 1.187 16 C -0.169 4.169 17 C -0.059 4.059 18 N -0.275 5.275 19 C -0.128 4.128 20 H 0.087 0.913 21 H 0.096 0.904 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -13.512 1.228 -11.862 18.022 hybrid contribution 0.868 0.636 0.448 1.166 sum -12.644 1.864 -11.415 17.136 Atomic orbital electron populations 1.21883 0.91803 1.03021 1.02951 1.21578 0.97057 0.94493 0.88986 0.94634 1.21666 0.92622 1.01879 0.97849 1.22075 0.94709 0.93439 0.86001 0.95538 1.85200 1.35737 1.59326 1.45436 1.20373 0.94705 1.15958 1.12076 0.93706 1.25206 0.96891 1.01604 0.97209 1.69794 1.19393 1.44604 1.26437 0.85116 0.79420 0.78571 0.76923 1.19908 1.20402 1.18736 1.22016 0.99591 1.00672 0.94620 1.21963 0.87516 0.98357 0.98041 1.61984 1.06807 1.55585 1.03075 1.22542 1.01257 0.97540 0.91436 0.91335 0.90402 0.91765 0.91240 0.91461 0.91721 0.93121 0.91561 0.95270 0.88885 0.90461 0.89312 0.95550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.79 71.98 0.63 -2.20 16 2 C 0.09 2.38 2.45 44.92 0.11 2.49 16 3 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 4 C -0.10 -3.58 5.02 30.64 0.15 -3.43 16 5 C 0.10 4.17 2.72 30.67 0.08 4.26 16 6 H 0.03 1.21 7.80 -2.38 -0.02 1.19 16 7 O -0.34 -18.60 8.26 -81.94 -0.68 -19.27 16 8 C -0.35 -21.70 10.24 67.91 0.70 -21.00 16 9 H 0.05 2.96 7.88 -2.91 -0.02 2.94 16 10 C -0.02 -1.01 5.49 84.83 0.47 -0.54 16 11 N -0.95 -61.15 13.96 21.61 0.30 -60.85 16 12 Si 0.98 49.00 28.62 68.60 1.96 50.96 16 13 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 15 H -0.26 -13.02 7.11 99.48 0.71 -12.31 16 16 C -0.13 -4.98 5.72 30.65 0.18 -4.81 16 17 C 0.07 2.02 5.46 86.33 0.47 2.49 16 18 N -0.55 -14.51 4.75 -896.94 -4.26 -18.77 16 19 C 0.02 0.37 9.30 127.69 1.19 1.56 16 20 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.08 1.25 6.15 -2.39 -0.01 1.23 16 22 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 2.32 8.12 -2.39 -0.02 2.30 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.39 5.75 -2.39 -0.01 1.38 16 32 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 Total: -1.00 -68.84 257.55 2.37 -66.47 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: 1.07 Total: 2.65 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 3.98 Total: -21.18 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -3.96 Total: -79.62 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.68 Total: -19.27 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 1.96 Total: 50.96 kcal Total: -68.84 2.37 -66.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.733 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds