Wall clock time and date at job start Mon Mar 30 2020 02:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08994 * 109.45736 * 2 1 4 4 C 1.53037 * 109.46592 * 240.02284 * 2 1 3 5 5 C 1.53116 * 109.28271 * 180.80689 * 4 2 1 6 6 H 1.09000 * 109.57381 * 297.72136 * 5 4 2 7 7 O 1.42902 * 109.52318 * 177.55833 * 5 4 2 8 8 C 1.34927 * 116.99570 * 150.31311 * 7 5 4 9 9 H 1.08001 * 120.00222 * 0.02562 * 8 7 5 10 10 C 1.38641 * 119.99751 * 180.02562 * 8 7 5 11 11 N 1.31583 * 119.99747 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00044 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46954 * 89.99648 * 12 10 8 14 14 H 1.48497 * 109.46982 * 210.00290 * 12 10 8 15 15 H 1.48502 * 109.46839 * 330.00219 * 12 10 8 16 16 C 1.53118 * 109.15992 * 57.65643 * 5 4 2 17 17 C 1.53036 * 109.27863 * 302.34744 * 16 5 4 18 18 N 1.46851 * 109.52435 * 59.17888 * 17 16 5 19 19 C 1.46901 * 110.99882 * 174.16334 * 18 17 16 20 20 H 1.08997 * 109.47302 * 300.02772 * 1 2 3 21 21 H 1.09002 * 109.46993 * 60.02815 * 1 2 3 22 22 H 1.08999 * 109.47342 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.50194 * 60.86060 * 4 2 1 24 24 H 1.09000 * 109.50354 * 300.74981 * 4 2 1 25 25 H 0.97001 * 119.99497 * 179.97438 * 11 10 8 26 26 H 1.09000 * 109.50290 * 182.40700 * 16 5 4 27 27 H 1.09004 * 109.53659 * 62.30499 * 16 5 4 28 28 H 1.09008 * 109.46041 * 299.16332 * 17 16 5 29 29 H 1.08998 * 109.45767 * 179.18900 * 17 16 5 30 30 H 1.09002 * 109.47401 * 56.04503 * 19 18 17 31 31 H 1.09001 * 109.46874 * 296.04515 * 19 18 17 32 32 H 1.09004 * 109.46970 * 176.04649 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5709 -0.7362 -1.2355 6 1 3.9466 0.2866 -1.2677 7 8 4.0520 -1.4577 -2.3713 8 6 5.2496 -1.0868 -2.8702 9 1 5.7986 -0.2778 -2.4115 10 6 5.7753 -1.7444 -3.9717 11 7 5.1062 -2.7298 -4.5308 12 14 7.4336 -1.2316 -4.6620 13 1 8.5090 -2.0093 -3.9958 14 1 7.4645 -1.4951 -6.1231 15 1 7.6456 0.2175 -4.4157 16 6 4.0547 -1.4189 0.0468 17 6 3.4864 -0.6778 1.2591 18 7 2.0191 -0.6918 1.1994 19 6 1.4372 -0.1105 2.4166 20 1 -0.3634 0.5142 0.8897 21 1 -0.3633 0.5134 -0.8903 22 1 -0.3634 -1.0276 0.0005 23 1 1.6894 -0.1983 -2.1399 24 1 1.6659 -1.7447 -1.2575 25 1 5.4739 -3.1897 -5.3017 26 1 5.1438 -1.3948 0.0833 27 1 3.7129 -2.4539 0.0600 28 1 3.8403 0.3532 1.2532 29 1 3.8173 -1.1701 2.1736 30 1 1.8277 0.8969 2.5608 31 1 1.6994 -0.7283 3.2755 32 1 0.3525 -0.0689 2.3166 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261077424.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:27 Heat of formation + Delta-G solvation = -37.488258 kcal Electronic energy + Delta-G solvation = -13261.769783 eV Core-core repulsion = 11029.650201 eV Total energy + Delta-G solvation = -2232.119582 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.98238 -36.07964 -32.38024 -32.09013 -30.92008 -26.88253 -25.80107 -24.25901 -22.37162 -20.66816 -19.25550 -17.42395 -15.68440 -15.29457 -14.89259 -14.33992 -14.01913 -13.98202 -13.10900 -12.63763 -12.54636 -11.89306 -11.74087 -11.65248 -11.40868 -11.25810 -11.01979 -10.67977 -10.60911 -10.47721 -10.29023 -9.67760 -9.31632 -9.00064 -8.08937 -7.91066 -5.89826 -3.52741 3.33376 3.35919 3.39836 4.12747 4.33900 5.07662 5.16683 5.26584 5.37429 5.48121 5.51061 5.61501 5.72839 5.80565 5.83801 5.96061 5.97040 6.07465 6.17549 6.26019 6.35665 6.57305 6.64128 6.80119 6.97510 7.08682 7.37686 7.39372 7.51978 8.48378 9.53603 10.24285 11.31300 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.064907 B = 0.008248 C = 0.007740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.280500 B = 3394.114336 C = 3616.826638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.085 3.915 3 H 0.036 0.964 4 C -0.105 4.105 5 C 0.099 3.901 6 H 0.032 0.968 7 O -0.285 6.285 8 C -0.357 4.357 9 H 0.061 0.939 10 C 0.021 3.979 11 N -0.889 5.889 12 Si 0.922 3.078 13 H -0.281 1.281 14 H -0.284 1.284 15 H -0.276 1.276 16 C -0.136 4.136 17 C 0.061 3.939 18 N -0.538 5.538 19 C 0.020 3.980 20 H 0.053 0.947 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.257 0.743 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.019 0.981 31 H 0.063 0.937 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 5.834 10.742 13.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 H 0.054 0.946 4 C -0.143 4.143 5 C 0.039 3.961 6 H 0.050 0.950 7 O -0.200 6.200 8 C -0.437 4.437 9 H 0.078 0.922 10 C -0.176 4.176 11 N -0.532 5.532 12 Si 0.750 3.250 13 H -0.208 1.208 14 H -0.209 1.209 15 H -0.202 1.202 16 C -0.174 4.174 17 C -0.067 4.067 18 N -0.264 5.264 19 C -0.128 4.128 20 H 0.072 0.928 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.255 5.090 10.486 13.228 hybrid contribution 1.324 1.282 -0.121 1.847 sum -4.931 6.371 10.365 13.128 Atomic orbital electron populations 1.21925 0.94600 1.02584 1.01240 1.21596 0.94985 0.95235 0.90546 0.94644 1.21635 0.95847 1.01562 0.95269 1.21733 0.92512 0.94120 0.87703 0.94965 1.85692 1.35846 1.56816 1.41657 1.20864 0.94859 1.16221 1.11721 0.92180 1.24936 0.98737 0.97008 0.96966 1.70024 1.37691 1.22836 1.22693 0.86009 0.82387 0.78276 0.78359 1.20763 1.20920 1.20154 1.22144 1.00203 1.00891 0.94164 1.22084 0.86622 0.98599 0.99363 1.61962 1.07670 1.54874 1.01845 1.22444 1.00426 0.97100 0.92853 0.92806 0.92152 0.91663 0.91451 0.90721 0.93298 0.91582 0.90957 0.95501 0.91281 0.96219 0.91780 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.79 37.15 0.33 -1.53 16 2 C 0.08 1.32 2.44 -67.72 -0.17 1.16 16 3 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.11 -2.04 5.03 -26.65 -0.13 -2.17 16 5 C 0.10 2.24 2.72 -26.61 -0.07 2.17 16 6 H 0.03 0.73 7.81 -51.93 -0.41 0.33 16 7 O -0.29 -8.33 9.43 -16.50 -0.16 -8.48 16 8 C -0.36 -10.65 9.78 30.88 0.30 -10.35 16 9 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 10 C 0.02 0.64 5.49 -17.51 -0.10 0.55 16 11 N -0.89 -28.36 13.67 55.48 0.76 -27.60 16 12 Si 0.92 22.40 29.55 -169.99 -5.02 17.38 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C -0.14 -2.71 5.72 -26.65 -0.15 -2.87 16 17 C 0.06 0.98 5.46 -3.83 -0.02 0.96 16 18 N -0.54 -8.29 4.75 -234.92 -1.12 -9.41 16 19 C 0.02 0.24 9.30 60.07 0.56 0.80 16 20 H 0.05 0.58 6.15 -51.93 -0.32 0.26 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.77 5.75 -51.93 -0.30 0.47 16 LS Contribution 258.65 15.07 3.90 3.90 Total: -1.00 -32.74 258.65 -6.30 -39.04 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -5.21 Total: -3.55 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 0.55 Total: -11.29 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.36 Total: -37.01 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.16 Total: -8.48 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.74 -6.30 -39.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261077424.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.555 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds