Wall clock time and date at job start Mon Mar 30 2020 02:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.48566 * 2 1 4 4 C 1.53100 * 109.47697 * 120.02220 * 2 1 3 5 5 C 1.53173 * 109.16135 * 177.60029 * 4 2 1 6 6 C 1.50707 * 109.54162 * 62.97682 * 5 4 2 7 7 H 1.07994 * 119.99797 * 2.49598 * 6 5 4 8 8 C 1.37877 * 119.99726 * 182.49511 * 6 5 4 9 9 N 1.31513 * 120.00284 * 353.41464 * 8 6 5 10 10 Si 1.86800 * 120.00078 * 173.41941 * 8 6 5 11 11 H 1.48496 * 109.47190 * 89.99724 * 10 8 6 12 12 H 1.48495 * 109.47241 * 209.99770 * 10 8 6 13 13 H 1.48504 * 109.46855 * 329.99926 * 10 8 6 14 14 C 1.52999 * 109.54321 * 183.15082 * 5 4 2 15 15 N 1.46905 * 109.47081 * 294.72168 * 14 5 4 16 16 C 1.53169 * 109.04153 * 303.01975 * 5 4 2 17 17 C 1.53094 * 109.16431 * 56.98032 * 16 5 4 18 18 O 1.42903 * 109.48988 * 239.96494 * 2 1 3 19 19 H 1.08995 * 109.47123 * 300.00433 * 1 2 3 20 20 H 1.09011 * 109.46504 * 60.00072 * 1 2 3 21 21 H 1.08998 * 109.47396 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.52000 * 297.50453 * 4 2 1 23 23 H 1.09000 * 109.52312 * 57.62971 * 4 2 1 24 24 H 0.97001 * 120.00340 * 179.97438 * 9 8 6 25 25 H 1.09002 * 109.47377 * 54.71901 * 14 5 4 26 26 H 1.08998 * 109.47297 * 174.72114 * 14 5 4 27 27 H 1.00895 * 110.99959 * 61.70616 * 15 14 5 28 28 H 1.00903 * 110.99705 * 185.66172 * 15 14 5 29 29 H 1.09000 * 109.53021 * 176.88917 * 16 5 4 30 30 H 1.09007 * 109.51945 * 297.07694 * 16 5 4 31 31 H 1.08996 * 109.47761 * 62.37551 * 17 16 5 32 32 H 1.08994 * 109.48401 * 182.40193 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7222 1.2497 5 6 3.5710 -0.7706 1.2125 6 6 4.1209 0.6319 1.2543 7 1 3.4491 1.4728 1.3433 8 6 5.4816 0.8414 1.1790 9 7 6.3068 -0.1824 1.2013 10 14 6.1531 2.5794 1.0454 11 1 6.3956 3.1223 2.4061 12 1 7.4288 2.5601 0.2856 13 1 5.1686 3.4374 0.3383 14 6 4.0876 -1.5590 2.4177 15 7 3.7582 -0.8362 3.6534 16 6 4.0178 -1.4598 -0.0804 17 6 3.4310 -0.7092 -1.2787 18 8 2.0068 -0.6743 -1.1662 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 1.7146 -0.1842 2.1399 23 1 1.6434 -1.7370 1.2717 24 1 7.2640 -0.0351 1.1479 25 1 3.6187 -2.5429 2.4363 26 1 5.1688 -1.6732 2.3408 27 1 2.7595 -0.7418 3.7618 28 1 4.1681 -1.2883 4.4570 29 1 5.1060 -1.4495 -0.1415 30 1 3.6616 -2.4900 -0.0858 31 1 3.8194 0.3091 -1.2954 32 1 3.7106 -1.2201 -2.2000 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:24 Heat of formation + Delta-G solvation = -75.119115 kcal Electronic energy + Delta-G solvation = -13994.046694 eV Core-core repulsion = 11760.295316 eV Total energy + Delta-G solvation = -2233.751378 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.44874 -36.90161 -34.02984 -33.27530 -32.37802 -28.54661 -26.87194 -26.10774 -23.39580 -21.94037 -20.59137 -17.64831 -16.98619 -16.81832 -16.68021 -15.78391 -15.52748 -14.99482 -14.84204 -14.03599 -13.75242 -13.28949 -13.18218 -12.94562 -12.75118 -12.53314 -12.39411 -12.17747 -11.86264 -11.72263 -11.15253 -10.79074 -10.60269 -10.37089 -9.91614 -9.02817 -7.87123 -5.93070 1.43817 1.47735 1.53118 2.54703 3.11011 3.38895 4.12249 4.16724 4.32281 4.53080 4.54671 4.65892 4.71313 4.83207 4.88272 4.92606 5.00907 5.13146 5.24867 5.32291 5.41191 5.44256 5.67082 5.77592 5.86780 6.21716 6.48061 6.60483 6.79820 7.00844 7.07537 7.68847 9.13625 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.031291 B = 0.015918 C = 0.013865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.618299 B = 1758.638439 C = 2018.982225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.042 0.958 4 C -0.124 4.124 5 C 0.063 3.937 6 C -0.466 4.466 7 H 0.039 0.961 8 C 0.031 3.969 9 N -0.907 5.907 10 Si 0.927 3.073 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.276 1.276 14 C 0.086 3.914 15 N -0.832 5.832 16 C -0.136 4.136 17 C 0.080 3.920 18 O -0.402 6.402 19 H 0.082 0.918 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.044 0.956 24 H 0.252 0.748 25 H -0.019 1.019 26 H 0.069 0.931 27 H 0.329 0.671 28 H 0.328 0.672 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.216 -1.321 -0.518 7.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.031 3.969 3 H 0.060 0.940 4 C -0.162 4.162 5 C 0.063 3.937 6 C -0.505 4.505 7 H 0.057 0.943 8 C -0.167 4.167 9 N -0.548 5.548 10 Si 0.756 3.244 11 H -0.214 1.214 12 H -0.217 1.217 13 H -0.201 1.201 14 C -0.045 4.045 15 N -0.360 5.360 16 C -0.175 4.175 17 C 0.004 3.996 18 O -0.322 6.322 19 H 0.101 0.899 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.061 0.939 25 H -0.001 1.001 26 H 0.088 0.912 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.750 -0.818 -0.993 6.871 hybrid contribution 0.608 0.090 0.541 0.819 sum -6.142 -0.728 -0.452 6.202 Atomic orbital electron populations 1.21759 0.91917 1.02718 1.02821 1.22079 0.95055 0.94752 0.85004 0.93965 1.22119 0.97623 0.98720 0.97731 1.18255 0.90397 0.94414 0.90659 1.20873 0.91065 0.91494 1.47019 0.94302 1.25243 0.97490 0.98167 0.95758 1.69885 1.02217 1.30106 1.52603 0.86044 0.77660 0.83301 0.77371 1.21423 1.21654 1.20114 1.21710 1.01165 0.90616 0.90973 1.58457 1.15839 1.57905 1.03827 1.22020 1.02338 0.96193 0.96910 1.22357 0.80027 0.99401 0.97848 1.87696 1.21997 1.78463 1.44083 0.89908 0.91804 0.91970 0.91827 0.93739 0.93868 1.00123 0.91225 0.85829 0.86060 0.90772 0.95282 0.94531 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.56 71.98 0.69 -3.24 16 2 C 0.09 3.39 3.03 30.63 0.09 3.49 16 3 H 0.04 1.78 6.92 -2.39 -0.02 1.77 16 4 C -0.12 -4.95 3.85 30.69 0.12 -4.83 16 5 C 0.06 2.93 0.33 -52.81 -0.02 2.91 16 6 C -0.47 -23.94 5.68 25.60 0.15 -23.79 16 7 H 0.04 2.06 7.02 -2.91 -0.02 2.04 16 8 C 0.03 1.65 5.12 84.65 0.43 2.08 16 9 N -0.91 -49.42 9.48 21.45 0.20 -49.22 16 10 Si 0.93 43.61 29.54 68.60 2.03 45.64 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 C 0.09 3.94 5.46 86.30 0.47 4.41 16 15 N -0.83 -33.96 9.00 -186.71 -1.68 -35.64 16 16 C -0.14 -6.26 4.72 30.68 0.14 -6.12 16 17 C 0.08 3.41 6.62 72.01 0.48 3.89 16 18 O -0.40 -16.61 10.41 -148.98 -1.55 -18.16 16 19 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 20 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 21 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.06 2.43 6.98 -2.39 -0.02 2.41 16 23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 25 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H 0.07 3.63 6.18 -2.39 -0.01 3.62 16 27 H 0.33 12.01 7.55 -89.70 -0.68 11.33 16 28 H 0.33 11.84 9.08 -89.69 -0.81 11.02 16 29 H 0.07 3.79 6.11 -2.39 -0.01 3.78 16 30 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.04 1.69 7.38 -2.39 -0.02 1.67 16 32 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -56.54 246.65 1.17 -55.37 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -0.38 Total: 23.22 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 2.55 Total: -21.20 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -1.48 Total: -84.86 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -1.55 Total: -18.16 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -56.54 1.17 -55.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.752 kcal (2) G-P(sol) polarization free energy of solvation -56.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds