Wall clock time and date at job start Mon Mar 30 2020 02:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47700 * 2 1 4 4 C 1.53086 * 109.49149 * 239.97607 * 2 1 3 5 5 C 1.53174 * 109.16716 * 182.40091 * 4 2 1 6 6 C 1.50703 * 109.61308 * 297.07050 * 5 4 2 7 7 H 1.07998 * 120.00095 * 118.17791 * 6 5 4 8 8 C 1.37875 * 120.00089 * 298.16735 * 6 5 4 9 9 N 1.31520 * 119.99882 * 2.50646 * 8 6 5 10 10 Si 1.86794 * 120.00364 * 182.50075 * 8 6 5 11 11 H 1.48504 * 109.46944 * 60.00136 * 10 8 6 12 12 H 1.48497 * 109.47377 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47157 * 300.00626 * 10 8 6 14 14 C 1.53000 * 109.54710 * 176.84693 * 5 4 2 15 15 N 1.46898 * 109.47023 * 175.07419 * 14 5 4 16 16 C 1.53174 * 109.03733 * 56.97791 * 5 4 2 17 17 C 1.53100 * 109.16380 * 303.02337 * 16 5 4 18 18 O 1.42902 * 109.48220 * 120.02649 * 2 1 3 19 19 H 1.09000 * 109.47264 * 299.97025 * 1 2 3 20 20 H 1.09001 * 109.47400 * 59.97865 * 1 2 3 21 21 H 1.09006 * 109.46533 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.52606 * 62.49043 * 4 2 1 23 23 H 1.09009 * 109.52456 * 302.30635 * 4 2 1 24 24 H 0.96995 * 120.00310 * 180.02562 * 9 8 6 25 25 H 1.08995 * 109.47349 * 55.07203 * 14 5 4 26 26 H 1.09001 * 109.47180 * 295.07428 * 14 5 4 27 27 H 1.00898 * 111.00434 * 56.04617 * 15 14 5 28 28 H 1.00903 * 110.99652 * 179.97438 * 15 14 5 29 29 H 1.09003 * 109.52430 * 62.92722 * 16 5 4 30 30 H 1.08998 * 109.52934 * 183.05629 * 16 5 4 31 31 H 1.08996 * 109.48300 * 177.58663 * 17 16 5 32 32 H 1.08997 * 109.47874 * 297.62541 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0408 -0.7221 -1.2495 5 6 3.5713 -0.7704 -1.2120 6 6 4.1229 0.6315 -1.2525 7 1 4.7122 1.0039 -0.4278 8 6 3.8753 1.4384 -2.3427 9 7 3.1169 1.0025 -3.3248 10 14 4.6167 3.1510 -2.4248 11 1 6.0978 3.0517 -2.3809 12 1 4.2015 3.8101 -3.6890 13 1 4.1400 3.9526 -1.2693 14 6 4.0882 -1.5589 -2.4170 15 7 5.5560 -1.5046 -2.4446 16 6 4.0179 -1.4595 0.0810 17 6 3.4308 -0.7089 1.2792 18 8 2.0066 -0.6741 1.1664 19 1 -0.3634 0.5134 0.8902 20 1 -0.3634 0.5142 -0.8898 21 1 -0.3632 -1.0278 -0.0005 22 1 1.7151 -0.1842 -2.1398 23 1 1.6448 -1.7375 -1.2710 24 1 2.9430 1.5700 -4.0920 25 1 3.6912 -1.1231 -3.3338 26 1 3.7645 -2.5967 -2.3382 27 1 5.9468 -1.8437 -1.5784 28 1 5.9220 -2.0188 -3.2319 29 1 3.6618 -2.4897 0.0865 30 1 5.1062 -1.4500 0.1418 31 1 3.7100 -1.2198 2.2006 32 1 3.8191 0.3094 1.2960 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279177.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:25 Heat of formation + Delta-G solvation = -56.542449 kcal Electronic energy + Delta-G solvation = -14019.061934 eV Core-core repulsion = 11786.116101 eV Total energy + Delta-G solvation = -2232.945833 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.70577 -35.14356 -32.16060 -31.48792 -30.65526 -27.02855 -24.98630 -23.81317 -22.22508 -20.04464 -18.70256 -15.73422 -15.23184 -15.08601 -14.77866 -14.18957 -13.71869 -13.30849 -12.82907 -12.45221 -12.00911 -11.64976 -11.54220 -11.25112 -10.91936 -10.68245 -10.56362 -10.33431 -10.09492 -9.86568 -9.33922 -9.01083 -8.81412 -8.32937 -8.10751 -7.33434 -5.85024 -3.88690 3.39415 3.43349 3.48078 4.54247 4.73610 5.43904 5.72757 5.93077 5.96892 6.03279 6.17343 6.26416 6.27069 6.51791 6.56837 6.63416 6.65186 6.75226 6.88017 7.00703 7.15719 7.23457 7.51597 7.72390 7.76021 8.14024 8.28917 8.37915 8.56710 8.64087 9.04677 9.73724 11.18301 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.028789 B = 0.017276 C = 0.014140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.371640 B = 1620.399096 C = 1979.721894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.096 3.904 3 H 0.064 0.936 4 C -0.130 4.130 5 C 0.073 3.927 6 C -0.473 4.473 7 H 0.050 0.950 8 C 0.072 3.928 9 N -0.893 5.893 10 Si 0.887 3.113 11 H -0.279 1.279 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.079 3.921 15 N -0.825 5.825 16 C -0.142 4.142 17 C 0.075 3.925 18 O -0.401 6.401 19 H 0.048 0.952 20 H 0.065 0.935 21 H 0.050 0.950 22 H 0.102 0.898 23 H 0.021 0.979 24 H 0.257 0.743 25 H 0.098 0.902 26 H -0.027 1.027 27 H 0.319 0.681 28 H 0.313 0.687 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 -3.164 3.714 4.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.169 4.169 5 C 0.072 3.928 6 C -0.511 4.511 7 H 0.068 0.932 8 C -0.128 4.128 9 N -0.533 5.533 10 Si 0.716 3.284 11 H -0.204 1.204 12 H -0.217 1.217 13 H -0.209 1.209 14 C -0.051 4.051 15 N -0.351 5.351 16 C -0.179 4.179 17 C -0.002 4.002 18 O -0.321 6.321 19 H 0.067 0.933 20 H 0.084 0.916 21 H 0.069 0.931 22 H 0.120 0.880 23 H 0.040 0.960 24 H 0.067 0.933 25 H 0.116 0.884 26 H -0.009 1.009 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.249 -2.379 3.582 4.478 hybrid contribution 0.659 -0.054 -0.245 0.705 sum -0.590 -2.433 3.337 4.172 Atomic orbital electron populations 1.21757 0.95434 1.01395 1.01122 1.22009 0.92333 0.96402 0.85314 0.91765 1.22147 0.98352 0.97469 0.98919 1.18179 0.91335 0.94676 0.88585 1.20728 1.31131 0.96131 1.03087 0.93223 1.24737 0.94817 0.97659 0.95546 1.69722 1.38196 1.36517 1.08837 0.86758 0.79930 0.84939 0.76818 1.20428 1.21690 1.20857 1.21894 0.86295 0.93106 1.03820 1.58625 1.08189 1.62879 1.05436 1.22230 0.99651 0.97880 0.98185 1.22329 0.81233 0.99873 0.96716 1.87683 1.21159 1.78722 1.44523 0.93324 0.91608 0.93050 0.88031 0.95991 0.93331 0.88352 1.00894 0.86976 0.87698 0.94403 0.92472 0.91613 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.57 37.16 0.36 -2.18 16 2 C 0.10 2.09 3.04 -26.69 -0.08 2.01 16 3 H 0.06 1.52 7.38 -51.93 -0.38 1.14 16 4 C -0.13 -3.03 4.04 -26.60 -0.11 -3.14 16 5 C 0.07 1.71 0.33 -155.48 -0.05 1.66 16 6 C -0.47 -12.20 5.76 -34.44 -0.20 -12.40 16 7 H 0.05 1.31 6.86 -52.49 -0.36 0.95 16 8 C 0.07 1.92 5.15 -17.82 -0.09 1.82 16 9 N -0.89 -24.06 9.43 55.43 0.52 -23.53 16 10 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 14 C 0.08 1.84 5.44 -3.83 -0.02 1.82 16 15 N -0.82 -17.41 9.05 -10.37 -0.09 -17.51 16 16 C -0.14 -2.96 4.58 -26.59 -0.12 -3.08 16 17 C 0.08 1.52 6.61 37.21 0.25 1.76 16 18 O -0.40 -8.65 10.41 -35.23 -0.37 -9.02 16 19 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 20 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.10 2.58 6.07 -51.93 -0.32 2.26 16 23 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 24 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 25 H 0.10 2.56 6.21 -51.93 -0.32 2.24 16 26 H -0.03 -0.60 8.14 -51.93 -0.42 -1.02 16 27 H 0.32 6.20 7.34 -39.29 -0.29 5.91 16 28 H 0.31 5.82 9.08 -39.29 -0.36 5.47 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.14 6.84 -51.93 -0.36 0.79 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 1.12 6.84 -51.93 -0.36 0.76 16 LS Contribution 246.18 15.07 3.71 3.71 Total: -1.00 -27.36 246.18 -6.15 -33.51 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.83 Total: 8.23 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -0.07 Total: -11.73 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.43 Total: -41.04 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.37 Total: -9.02 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.36 -6.15 -33.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279177.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.033 kcal (2) G-P(sol) polarization free energy of solvation -27.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds