Wall clock time and date at job start Mon Mar 30 2020 02:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47700 * 2 1 4 4 C 1.53086 * 109.49149 * 239.97607 * 2 1 3 5 5 C 1.53174 * 109.16716 * 182.40091 * 4 2 1 6 6 C 1.50703 * 109.61308 * 297.07050 * 5 4 2 7 7 H 1.07998 * 120.00095 * 118.17791 * 6 5 4 8 8 C 1.37875 * 120.00089 * 298.16735 * 6 5 4 9 9 N 1.31520 * 119.99882 * 2.50646 * 8 6 5 10 10 Si 1.86794 * 120.00364 * 182.50075 * 8 6 5 11 11 H 1.48504 * 109.46944 * 60.00136 * 10 8 6 12 12 H 1.48497 * 109.47377 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47157 * 300.00626 * 10 8 6 14 14 C 1.53000 * 109.54710 * 176.84693 * 5 4 2 15 15 N 1.46898 * 109.47023 * 175.07419 * 14 5 4 16 16 C 1.53174 * 109.03733 * 56.97791 * 5 4 2 17 17 C 1.53100 * 109.16380 * 303.02337 * 16 5 4 18 18 O 1.42902 * 109.48220 * 120.02649 * 2 1 3 19 19 H 1.09000 * 109.47264 * 299.97025 * 1 2 3 20 20 H 1.09001 * 109.47400 * 59.97865 * 1 2 3 21 21 H 1.09006 * 109.46533 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.52606 * 62.49043 * 4 2 1 23 23 H 1.09009 * 109.52456 * 302.30635 * 4 2 1 24 24 H 0.96995 * 120.00310 * 180.02562 * 9 8 6 25 25 H 1.08995 * 109.47349 * 55.07203 * 14 5 4 26 26 H 1.09001 * 109.47180 * 295.07428 * 14 5 4 27 27 H 1.00898 * 111.00434 * 56.04617 * 15 14 5 28 28 H 1.00903 * 110.99652 * 179.97438 * 15 14 5 29 29 H 1.09003 * 109.52430 * 62.92722 * 16 5 4 30 30 H 1.08998 * 109.52934 * 183.05629 * 16 5 4 31 31 H 1.08996 * 109.48300 * 177.58663 * 17 16 5 32 32 H 1.08997 * 109.47874 * 297.62541 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0408 -0.7221 -1.2495 5 6 3.5713 -0.7704 -1.2120 6 6 4.1229 0.6315 -1.2525 7 1 4.7122 1.0039 -0.4278 8 6 3.8753 1.4384 -2.3427 9 7 3.1169 1.0025 -3.3248 10 14 4.6167 3.1510 -2.4248 11 1 6.0978 3.0517 -2.3809 12 1 4.2015 3.8101 -3.6890 13 1 4.1400 3.9526 -1.2693 14 6 4.0882 -1.5589 -2.4170 15 7 5.5560 -1.5046 -2.4446 16 6 4.0179 -1.4595 0.0810 17 6 3.4308 -0.7089 1.2792 18 8 2.0066 -0.6741 1.1664 19 1 -0.3634 0.5134 0.8902 20 1 -0.3634 0.5142 -0.8898 21 1 -0.3632 -1.0278 -0.0005 22 1 1.7151 -0.1842 -2.1398 23 1 1.6448 -1.7375 -1.2710 24 1 2.9430 1.5700 -4.0920 25 1 3.6912 -1.1231 -3.3338 26 1 3.7645 -2.5967 -2.3382 27 1 5.9468 -1.8437 -1.5784 28 1 5.9220 -2.0188 -3.2319 29 1 3.6618 -2.4897 0.0865 30 1 5.1062 -1.4500 0.1418 31 1 3.7100 -1.2198 2.2006 32 1 3.8191 0.3094 1.2960 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279177.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:25 Heat of formation + Delta-G solvation = -75.151198 kcal Electronic energy + Delta-G solvation = -14019.868870 eV Core-core repulsion = 11786.116101 eV Total energy + Delta-G solvation = -2233.752769 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.43950 -36.92295 -33.99759 -33.21625 -32.42812 -28.68562 -26.95609 -25.57167 -23.90394 -21.76095 -20.58307 -17.64676 -16.92928 -16.78403 -16.70791 -15.92652 -15.51332 -15.02224 -14.57983 -14.18489 -13.68960 -13.36276 -13.19733 -12.92569 -12.72541 -12.50172 -12.38692 -12.22054 -11.87918 -11.70679 -11.11405 -10.79446 -10.66662 -10.27504 -9.92303 -9.05016 -7.86040 -5.93319 1.45635 1.48394 1.52848 2.55575 3.12328 3.41081 4.08218 4.30831 4.36567 4.40359 4.54937 4.65119 4.66338 4.81381 4.87679 4.97796 5.01500 5.17835 5.21639 5.30074 5.40112 5.45344 5.71627 5.77198 5.87188 6.22429 6.47161 6.62961 6.78808 6.98689 7.08477 7.69676 9.14290 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.028789 B = 0.017276 C = 0.014140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.371640 B = 1620.399096 C = 1979.721894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.097 3.903 3 H 0.038 0.962 4 C -0.126 4.126 5 C 0.063 3.937 6 C -0.471 4.471 7 H 0.039 0.961 8 C 0.034 3.966 9 N -0.907 5.907 10 Si 0.930 3.070 11 H -0.283 1.283 12 H -0.292 1.292 13 H -0.280 1.280 14 C 0.087 3.913 15 N -0.833 5.833 16 C -0.136 4.136 17 C 0.072 3.928 18 O -0.403 6.403 19 H 0.065 0.935 20 H 0.069 0.931 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.024 0.976 24 H 0.252 0.748 25 H 0.068 0.932 26 H -0.018 1.018 27 H 0.330 0.670 28 H 0.328 0.672 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 -3.663 4.706 6.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.040 3.960 3 H 0.056 0.944 4 C -0.164 4.164 5 C 0.062 3.938 6 C -0.509 4.509 7 H 0.057 0.943 8 C -0.164 4.164 9 N -0.547 5.547 10 Si 0.758 3.242 11 H -0.209 1.209 12 H -0.218 1.218 13 H -0.206 1.206 14 C -0.044 4.044 15 N -0.362 5.362 16 C -0.174 4.174 17 C -0.004 4.004 18 O -0.323 6.323 19 H 0.084 0.916 20 H 0.088 0.912 21 H 0.080 0.920 22 H 0.095 0.905 23 H 0.043 0.957 24 H 0.062 0.938 25 H 0.086 0.914 26 H 0.000 1.000 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.136 -2.882 4.582 5.531 hybrid contribution 0.664 0.077 -0.545 0.863 sum -0.473 -2.805 4.036 4.938 Atomic orbital electron populations 1.21714 0.92777 1.02414 1.02205 1.21952 0.94500 0.94676 0.84850 0.94355 1.22042 0.98367 0.97326 0.98688 1.18264 0.91475 0.93908 0.90163 1.20861 1.30424 0.97309 1.02357 0.94251 1.25227 0.95494 0.99906 0.95766 1.69854 1.38974 1.36944 1.08970 0.86078 0.78930 0.82558 0.76593 1.20858 1.21843 1.20629 1.21664 0.87384 0.93163 1.02216 1.58509 1.07169 1.63720 1.06802 1.22153 1.00224 0.98004 0.97016 1.22470 0.80526 0.99497 0.97957 1.87691 1.21959 1.78473 1.44175 0.91625 0.91208 0.92030 0.90514 0.95697 0.93848 0.91425 1.00016 0.85689 0.86079 0.93574 0.91621 0.88157 0.94245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 9.57 71.98 0.69 -3.94 16 2 C 0.10 4.13 3.04 30.62 0.09 4.22 16 3 H 0.04 1.81 7.38 -2.39 -0.02 1.80 16 4 C -0.13 -5.76 4.04 30.68 0.12 -5.64 16 5 C 0.06 2.88 0.33 -52.81 -0.02 2.86 16 6 C -0.47 -24.13 5.76 25.60 0.15 -23.98 16 7 H 0.04 2.06 6.86 -2.91 -0.02 2.04 16 8 C 0.03 1.80 5.15 84.65 0.44 2.23 16 9 N -0.91 -49.26 9.43 21.45 0.20 -49.06 16 10 Si 0.93 43.75 29.54 68.60 2.03 45.78 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 C 0.09 3.95 5.44 86.30 0.47 4.42 16 15 N -0.83 -34.03 9.05 -186.73 -1.69 -35.72 16 16 C -0.14 -5.40 4.58 30.69 0.14 -5.26 16 17 C 0.07 2.74 6.61 72.02 0.48 3.21 16 18 O -0.40 -16.55 10.41 -148.98 -1.55 -18.10 16 19 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 20 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 21 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 22 H 0.08 3.92 6.07 -2.39 -0.01 3.91 16 23 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 25 H 0.07 3.53 6.21 -2.39 -0.01 3.51 16 26 H -0.02 -0.78 8.14 -2.39 -0.02 -0.80 16 27 H 0.33 12.18 7.34 -89.70 -0.66 11.52 16 28 H 0.33 11.71 9.08 -89.69 -0.81 10.89 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 2.47 6.84 -2.39 -0.02 2.46 16 31 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.04 1.61 6.84 -2.39 -0.02 1.59 16 Total: -1.00 -56.32 246.18 1.19 -55.13 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.36 Total: 23.83 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 2.56 Total: -21.87 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -1.49 Total: -84.78 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -1.55 Total: -18.10 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -56.32 1.19 -55.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279177.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.019 kcal (2) G-P(sol) polarization free energy of solvation -56.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds