Wall clock time and date at job start Mon Mar 30 2020 02:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46660 * 2 1 4 4 O 1.42898 * 109.47203 * 120.00278 * 2 1 3 5 5 C 1.42902 * 113.99936 * 98.94744 * 4 2 1 6 6 C 1.50696 * 110.62510 * 176.45892 * 5 4 2 7 7 H 1.08010 * 119.99570 * 141.49971 * 6 5 4 8 8 C 1.37878 * 120.00620 * 321.50147 * 6 5 4 9 9 N 1.31509 * 120.00209 * 183.76832 * 8 6 5 10 10 Si 1.86802 * 119.99436 * 3.76235 * 8 6 5 11 11 H 1.48498 * 109.46925 * 84.60768 * 10 8 6 12 12 H 1.48508 * 109.46920 * 204.60577 * 10 8 6 13 13 H 1.48494 * 109.47336 * 324.60290 * 10 8 6 14 14 C 1.55427 * 110.84032 * 299.64368 * 5 4 2 15 15 C 1.54914 * 101.52174 * 82.83173 * 14 5 4 16 16 N 1.47846 * 104.89253 * 37.05909 * 15 14 5 17 17 C 1.47443 * 108.56867 * 335.85361 * 16 15 14 18 18 H 1.09000 * 109.46659 * 184.63477 * 1 2 3 19 19 H 1.08996 * 109.47059 * 304.63143 * 1 2 3 20 20 H 1.08999 * 109.47359 * 64.63992 * 1 2 3 21 21 H 1.09005 * 109.46926 * 240.00920 * 2 1 3 22 22 H 1.09003 * 109.47267 * 185.00753 * 3 2 1 23 23 H 1.08999 * 109.47821 * 305.00215 * 3 2 1 24 24 H 1.09003 * 109.47188 * 65.00722 * 3 2 1 25 25 H 0.97004 * 119.99528 * 179.97438 * 9 8 6 26 26 H 1.08995 * 111.10644 * 324.76002 * 14 5 4 27 27 H 1.09001 * 110.99789 * 200.84955 * 14 5 4 28 28 H 1.08995 * 110.36814 * 278.17729 * 15 14 5 29 29 H 1.08996 * 110.37281 * 155.94559 * 15 14 5 30 30 H 1.00900 * 110.99137 * 98.12113 * 16 15 14 31 31 H 1.08997 * 109.88855 * 120.39377 * 17 16 15 32 32 H 1.08997 * 109.88898 * 241.58159 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.3915 -2.0306 0.9378 6 6 2.9605 -2.6399 2.1932 7 1 2.7386 -3.6670 2.4434 8 6 3.7641 -1.8865 3.0224 9 7 4.3207 -2.4387 4.0782 10 14 4.0624 -0.0813 2.6458 11 1 2.9523 0.7310 3.2055 12 1 5.3461 0.3464 3.2577 13 1 4.1259 0.1137 1.1751 14 6 1.1889 -2.8666 0.4177 15 6 1.2122 -2.5343 -1.0952 16 7 2.6465 -2.4455 -1.4426 17 6 3.4063 -2.1216 -0.2212 18 1 -0.3632 -1.0243 0.0830 19 1 -0.3633 0.5840 0.8456 20 1 -0.3634 0.4401 -0.9286 21 1 1.8933 -0.5137 -0.8901 22 1 3.1262 1.4439 -0.0897 23 1 1.6053 1.9816 -0.8417 24 1 1.7516 1.9298 0.9315 25 1 4.8863 -1.9087 4.6613 26 1 0.2556 -2.5384 0.8752 27 1 1.3513 -3.9312 0.5861 28 1 0.7169 -1.5815 -1.2820 29 1 0.7320 -3.3292 -1.6657 30 1 2.9728 -3.3072 -1.8537 31 1 4.1329 -2.9081 -0.0170 32 1 3.9158 -1.1659 -0.3439 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261332396.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:14 Heat of formation + Delta-G solvation = -52.889609 kcal Electronic energy + Delta-G solvation = -14214.783047 eV Core-core repulsion = 11981.995613 eV Total energy + Delta-G solvation = -2232.787434 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.14586 -36.71607 -35.03589 -33.41501 -30.73292 -29.92121 -27.80998 -26.21028 -22.91128 -22.03255 -21.03625 -19.26537 -17.44012 -17.33504 -16.36957 -15.90941 -15.73291 -14.73712 -14.52451 -14.27734 -14.00293 -13.41934 -13.29310 -13.14158 -12.85955 -12.70486 -12.63761 -12.21875 -12.19384 -11.68599 -11.57389 -11.29563 -11.00921 -10.72125 -9.92067 -9.40864 -8.35857 -6.46952 1.41097 1.49578 1.62873 2.41732 2.86336 3.38561 3.39925 4.00005 4.15896 4.20021 4.27690 4.36645 4.51637 4.53786 4.63342 4.77335 4.87095 4.88653 4.94309 5.02266 5.09946 5.17902 5.32894 5.41621 5.47962 5.58232 5.89265 6.18317 6.48925 6.56730 6.83164 7.30466 8.76320 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.033404 B = 0.019411 C = 0.015070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.030648 B = 1442.120046 C = 1857.579714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.038 3.962 3 C -0.156 4.156 4 O -0.390 6.390 5 C 0.195 3.805 6 C -0.514 4.514 7 H 0.046 0.954 8 C 0.026 3.974 9 N -0.941 5.941 10 Si 0.994 3.006 11 H -0.292 1.292 12 H -0.331 1.331 13 H -0.240 1.240 14 C -0.165 4.165 15 C 0.029 3.971 16 N -0.680 5.680 17 C 0.025 3.975 18 H 0.064 0.936 19 H 0.049 0.951 20 H 0.087 0.913 21 H 0.099 0.901 22 H 0.045 0.955 23 H 0.095 0.905 24 H 0.046 0.954 25 H 0.266 0.734 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.344 0.656 31 H 0.049 0.951 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 4.586 -12.356 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 C -0.213 4.213 4 O -0.311 6.311 5 C 0.155 3.845 6 C -0.551 4.551 7 H 0.065 0.935 8 C -0.173 4.173 9 N -0.580 5.580 10 Si 0.827 3.173 11 H -0.220 1.220 12 H -0.263 1.263 13 H -0.164 1.164 14 C -0.204 4.204 15 C -0.099 4.099 16 N -0.309 5.309 17 C -0.105 4.105 18 H 0.083 0.917 19 H 0.068 0.932 20 H 0.106 0.894 21 H 0.117 0.883 22 H 0.064 0.936 23 H 0.113 0.887 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.160 0.840 31 H 0.067 0.933 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.488 5.340 -12.320 14.912 hybrid contribution 0.391 -0.519 1.086 1.266 sum -6.097 4.821 -11.233 13.660 Atomic orbital electron populations 1.22409 0.94802 1.02726 1.02648 1.22803 0.94818 0.93692 0.90546 1.22069 1.01049 0.95649 1.02512 1.87605 1.82892 1.25832 1.34792 1.20656 0.90883 0.79730 0.93215 1.20970 1.29040 0.98015 1.07092 0.93542 1.25870 0.93858 1.03475 0.94123 1.70058 1.32885 1.38610 1.16419 0.85037 0.73482 0.79018 0.79733 1.21977 1.26307 1.16437 1.23610 0.99369 0.99911 0.97521 1.23458 0.89899 1.03226 0.93355 1.61843 1.03424 1.39344 1.26318 1.23393 0.97336 1.00414 0.89327 0.91731 0.93158 0.89394 0.88337 0.93562 0.88659 0.93497 0.92542 0.90769 0.92212 0.88217 0.89513 0.84016 0.93287 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 8.11 71.98 0.58 -4.16 16 2 C 0.04 1.32 2.22 30.59 0.07 1.39 16 3 C -0.16 -4.88 8.81 71.98 0.63 -4.25 16 4 O -0.39 -17.58 5.07 -148.98 -0.76 -18.34 16 5 C 0.19 8.93 0.74 -10.26 -0.01 8.92 16 6 C -0.51 -29.54 8.73 25.60 0.22 -29.32 16 7 H 0.05 2.92 7.98 -2.91 -0.02 2.90 16 8 C 0.03 1.57 5.47 84.66 0.46 2.03 16 9 N -0.94 -60.05 13.96 21.45 0.30 -59.75 16 10 Si 0.99 51.09 24.57 68.60 1.69 52.77 16 11 H -0.29 -15.26 7.11 99.48 0.71 -14.55 16 12 H -0.33 -17.15 7.11 99.48 0.71 -16.45 16 13 H -0.24 -11.27 3.88 99.48 0.39 -10.88 16 14 C -0.17 -6.25 5.57 32.08 0.18 -6.07 16 15 C 0.03 0.85 6.33 86.78 0.55 1.40 16 16 N -0.68 -21.73 6.65 -504.43 -3.36 -25.08 16 17 C 0.03 1.04 5.57 86.65 0.48 1.52 16 18 H 0.06 1.82 4.77 -2.39 -0.01 1.81 16 19 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 20 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.10 3.33 3.73 -2.38 -0.01 3.32 16 22 H 0.05 1.54 7.11 -2.39 -0.02 1.52 16 23 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 26 H 0.07 2.75 6.56 -2.39 -0.02 2.73 16 27 H 0.06 2.34 7.98 -2.39 -0.02 2.32 16 28 H 0.10 2.73 3.87 -2.39 -0.01 2.72 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.34 9.54 8.91 -89.69 -0.80 8.74 16 31 H 0.05 2.13 7.81 -2.39 -0.02 2.11 16 32 H 0.06 2.61 6.32 -2.39 -0.02 2.59 16 Total: -1.00 -66.77 233.94 1.04 -65.72 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -0.01 Total: 13.21 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 3.17 Total: -28.54 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -3.06 Total: -84.83 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.76 Total: -18.34 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 1.69 Total: 52.77 kcal Total: -66.77 1.04 -65.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261332396.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.835 kcal (2) G-P(sol) polarization free energy of solvation -66.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds