Wall clock time and date at job start Mon Mar 30 2020 02:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.99105 * 2 1 4 4 O 1.43740 * 109.87790 * 238.90744 * 2 1 3 5 5 C 1.44386 * 106.97317 * 214.06262 * 4 2 1 6 6 C 1.54994 * 103.48794 * 40.06818 * 5 4 2 7 7 C 1.54103 * 109.87470 * 121.07749 * 2 1 3 8 8 H 1.08993 * 110.48607 * 240.13091 * 7 2 1 9 9 C 1.53006 * 110.60171 * 2.72417 * 7 2 1 10 10 N 1.46893 * 109.47064 * 181.28702 * 9 7 2 11 11 C 1.46899 * 111.00108 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47434 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99902 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00128 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99879 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00129 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47503 * 89.99771 * 16 14 12 18 18 H 1.48499 * 109.47423 * 209.99840 * 16 14 12 19 19 H 1.48500 * 109.47056 * 329.99896 * 16 14 12 20 20 H 1.08995 * 109.47425 * 179.62813 * 1 2 3 21 21 H 1.08994 * 109.47516 * 299.63963 * 1 2 3 22 22 H 1.09009 * 109.46573 * 59.63767 * 1 2 3 23 23 H 1.09001 * 110.61524 * 158.56195 * 5 4 2 24 24 H 1.08999 * 110.61849 * 281.55984 * 5 4 2 25 25 H 1.08999 * 110.91393 * 81.17090 * 6 5 4 26 26 H 1.09007 * 110.90703 * 204.74243 * 6 5 4 27 27 H 1.08996 * 109.47006 * 301.28495 * 9 7 2 28 28 H 1.09001 * 109.47143 * 61.28138 * 9 7 2 29 29 H 1.00900 * 110.99999 * 303.94951 * 10 9 7 30 30 H 1.08999 * 109.46903 * 300.00176 * 11 10 9 31 31 H 1.09004 * 109.47109 * 59.99505 * 11 10 9 32 32 H 0.97001 * 119.99936 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6981 -1.1576 5 6 3.2380 -1.3642 -0.7644 6 6 2.9194 -1.8915 0.6578 7 6 2.0539 -0.7481 1.2412 8 1 2.6618 -0.0857 1.8575 9 6 0.8916 -1.3188 2.0563 10 7 1.4165 -1.9990 3.2477 11 6 0.3264 -2.5614 4.0560 12 6 0.9022 -3.2502 5.2664 13 1 1.9710 -3.2680 5.4201 14 6 0.0644 -3.8567 6.1781 15 7 -1.2373 -3.8336 5.9917 16 14 0.7780 -4.7098 7.6788 17 1 0.8842 -3.7383 8.7970 18 1 -0.1095 -5.8308 8.0798 19 1 2.1269 -5.2386 7.3529 20 1 -0.3634 -1.0276 -0.0067 21 1 -0.3634 0.5082 0.8931 22 1 -0.3633 0.5195 -0.8868 23 1 3.4585 -2.1910 -1.4397 24 1 4.0685 -0.6590 -0.7354 25 1 2.3538 -2.8220 0.6102 26 1 3.8331 -2.0230 1.2376 27 1 0.2301 -0.5084 2.3624 28 1 0.3355 -2.0310 1.4466 29 1 2.0823 -2.7129 2.9926 30 1 -0.3394 -1.7598 4.3760 31 1 -0.2333 -3.2823 3.4600 32 1 -1.8268 -4.2600 6.6334 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300377077.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:17 Heat of formation + Delta-G solvation = -58.379611 kcal Electronic energy + Delta-G solvation = -12898.923806 eV Core-core repulsion = 10665.898308 eV Total energy + Delta-G solvation = -2233.025499 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.66955 -35.55680 -33.05004 -31.66523 -31.18168 -27.31013 -25.58580 -23.71545 -22.13526 -21.31272 -19.28169 -16.65793 -16.34748 -15.61943 -15.14224 -14.84268 -14.45891 -13.82284 -12.91281 -12.75587 -12.59236 -12.18000 -12.07033 -11.85785 -11.28109 -11.06285 -10.87429 -10.74762 -10.55501 -10.42602 -10.35232 -9.89940 -9.55202 -9.16577 -8.48351 -7.29252 -6.03922 -4.06110 3.31668 3.37284 3.40994 3.95236 4.41675 4.66336 4.89731 4.91057 5.15846 5.28836 5.31934 5.49351 5.59815 5.60886 5.71126 5.80960 5.91115 6.01202 6.14751 6.15551 6.28725 6.35964 6.50941 7.02554 7.24950 7.41581 7.77646 8.12243 8.38696 8.60908 9.03241 9.58926 11.07253 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.066534 B = 0.006743 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.736005 B = 4151.332484 C = 4435.036253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.077 3.923 3 H 0.065 0.935 4 O -0.380 6.380 5 C 0.047 3.953 6 C -0.151 4.151 7 C -0.116 4.116 8 H 0.088 0.912 9 C 0.068 3.932 10 N -0.692 5.692 11 C 0.194 3.806 12 C -0.515 4.515 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.055 0.945 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.023 0.977 29 H 0.327 0.673 30 H 0.027 0.973 31 H -0.014 1.014 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.214 5.383 -11.031 13.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.019 3.981 3 H 0.083 0.917 4 O -0.299 6.299 5 C -0.030 4.030 6 C -0.188 4.188 7 C -0.135 4.135 8 H 0.107 0.893 9 C -0.062 4.062 10 N -0.322 5.322 11 C 0.067 3.933 12 C -0.554 4.554 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.728 3.272 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 H 0.086 0.914 21 H 0.092 0.908 22 H 0.074 0.926 23 H 0.106 0.894 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.143 0.857 30 H 0.046 0.954 31 H 0.003 0.997 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.965 5.899 -10.773 13.654 hybrid contribution 0.088 -1.232 0.559 1.356 sum 6.053 4.666 -10.214 12.757 Atomic orbital electron populations 1.22021 0.93883 1.03215 1.02005 1.22749 0.95271 0.95236 0.84803 0.91712 1.88849 1.39726 1.67805 1.33563 1.23512 0.87630 0.96081 0.95751 1.23198 1.00714 0.99131 0.95794 1.22617 0.97817 0.97099 0.95977 0.89339 1.22039 0.94707 0.98115 0.91362 1.60693 1.18590 1.34572 1.18364 1.19547 0.88694 0.93462 0.91609 1.21196 0.93656 1.33850 1.06661 0.91986 1.24999 0.94803 0.96433 0.98379 1.69967 1.02446 1.44779 1.36570 0.86473 0.78854 0.79068 0.82847 1.20588 1.21279 1.19859 0.91447 0.90774 0.92598 0.89369 0.92471 0.90588 0.89994 0.91311 0.95853 0.85660 0.95444 0.99652 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.40 37.16 0.31 -1.69 16 2 C 0.08 1.04 4.06 -26.15 -0.11 0.94 16 3 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 4 O -0.38 -5.48 11.19 -35.23 -0.39 -5.87 16 5 C 0.05 0.56 7.72 38.21 0.29 0.85 16 6 C -0.15 -1.98 5.87 -24.72 -0.15 -2.12 16 7 C -0.12 -1.68 3.29 -89.09 -0.29 -1.97 16 8 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 9 C 0.07 1.20 3.87 -3.82 -0.01 1.19 16 10 N -0.69 -14.94 6.49 -115.06 -0.75 -15.68 16 11 C 0.19 5.15 5.44 -4.98 -0.03 5.12 16 12 C -0.52 -14.76 9.32 -34.44 -0.32 -15.09 16 13 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 16 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H 0.07 0.95 6.72 -51.93 -0.35 0.60 16 21 H 0.07 0.92 6.85 -51.93 -0.36 0.57 16 22 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 23 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.07 7.83 -51.93 -0.41 0.67 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.23 6.67 -51.93 -0.35 0.88 16 28 H 0.02 0.43 6.85 -51.93 -0.36 0.08 16 29 H 0.33 6.74 7.92 -39.29 -0.31 6.42 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H -0.01 -0.40 8.14 -51.93 -0.42 -0.83 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 259.34 15.07 3.91 3.91 Total: -1.00 -30.51 259.34 -6.97 -37.48 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.05 Total: 1.03 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -0.40 Total: -11.29 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.01 Total: -42.02 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.39 Total: -5.87 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.51 -6.97 -37.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300377077.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.904 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds