Wall clock time and date at job start Mon Mar 30 2020 02:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.99105 * 2 1 4 4 O 1.43740 * 109.87790 * 238.90744 * 2 1 3 5 5 C 1.44386 * 106.97317 * 214.06262 * 4 2 1 6 6 C 1.54994 * 103.48794 * 40.06818 * 5 4 2 7 7 C 1.54103 * 109.87470 * 121.07749 * 2 1 3 8 8 H 1.08993 * 110.48607 * 240.13091 * 7 2 1 9 9 C 1.53006 * 110.60171 * 2.72417 * 7 2 1 10 10 N 1.46893 * 109.47064 * 181.28702 * 9 7 2 11 11 C 1.46899 * 111.00108 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47434 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99902 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00128 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99879 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00129 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47503 * 89.99771 * 16 14 12 18 18 H 1.48499 * 109.47423 * 209.99840 * 16 14 12 19 19 H 1.48500 * 109.47056 * 329.99896 * 16 14 12 20 20 H 1.08995 * 109.47425 * 179.62813 * 1 2 3 21 21 H 1.08994 * 109.47516 * 299.63963 * 1 2 3 22 22 H 1.09009 * 109.46573 * 59.63767 * 1 2 3 23 23 H 1.09001 * 110.61524 * 158.56195 * 5 4 2 24 24 H 1.08999 * 110.61849 * 281.55984 * 5 4 2 25 25 H 1.08999 * 110.91393 * 81.17090 * 6 5 4 26 26 H 1.09007 * 110.90703 * 204.74243 * 6 5 4 27 27 H 1.08996 * 109.47006 * 301.28495 * 9 7 2 28 28 H 1.09001 * 109.47143 * 61.28138 * 9 7 2 29 29 H 1.00900 * 110.99999 * 303.94951 * 10 9 7 30 30 H 1.08999 * 109.46903 * 300.00176 * 11 10 9 31 31 H 1.09004 * 109.47109 * 59.99505 * 11 10 9 32 32 H 0.97001 * 119.99936 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6981 -1.1576 5 6 3.2380 -1.3642 -0.7644 6 6 2.9194 -1.8915 0.6578 7 6 2.0539 -0.7481 1.2412 8 1 2.6618 -0.0857 1.8575 9 6 0.8916 -1.3188 2.0563 10 7 1.4165 -1.9990 3.2477 11 6 0.3264 -2.5614 4.0560 12 6 0.9022 -3.2502 5.2664 13 1 1.9710 -3.2680 5.4201 14 6 0.0644 -3.8567 6.1781 15 7 -1.2373 -3.8336 5.9917 16 14 0.7780 -4.7098 7.6788 17 1 0.8842 -3.7383 8.7970 18 1 -0.1095 -5.8308 8.0798 19 1 2.1269 -5.2386 7.3529 20 1 -0.3634 -1.0276 -0.0067 21 1 -0.3634 0.5082 0.8931 22 1 -0.3633 0.5195 -0.8868 23 1 3.4585 -2.1910 -1.4397 24 1 4.0685 -0.6590 -0.7354 25 1 2.3538 -2.8220 0.6102 26 1 3.8331 -2.0230 1.2376 27 1 0.2301 -0.5084 2.3624 28 1 0.3355 -2.0310 1.4466 29 1 2.0823 -2.7129 2.9926 30 1 -0.3394 -1.7598 4.3760 31 1 -0.2333 -3.2823 3.4600 32 1 -1.8268 -4.2600 6.6334 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300377077.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:17 Heat of formation + Delta-G solvation = -80.153841 kcal Electronic energy + Delta-G solvation = -12899.868008 eV Core-core repulsion = 10665.898308 eV Total energy + Delta-G solvation = -2233.969700 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.77766 -37.21482 -34.93442 -33.20863 -32.32666 -29.11678 -26.94582 -25.25283 -23.56775 -22.91298 -20.52574 -18.55632 -17.70627 -16.85913 -16.65391 -16.20994 -16.08728 -15.31286 -14.65439 -14.28790 -13.86299 -13.74064 -13.37115 -13.13631 -13.09891 -12.66144 -12.57034 -12.19026 -12.03240 -11.72439 -11.64667 -11.58622 -11.24365 -10.67746 -10.57846 -9.14414 -8.24152 -6.36027 1.41038 1.43113 1.54327 2.39227 2.94656 3.09187 3.40874 3.66711 3.77780 4.14611 4.16862 4.31752 4.41804 4.44513 4.62765 4.71345 4.76330 4.88829 4.92578 5.03009 5.09609 5.11829 5.20848 5.25855 5.31177 5.59890 5.99624 6.00534 6.41472 6.70069 6.87051 7.35346 8.87672 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.066534 B = 0.006743 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.736005 B = 4151.332484 C = 4435.036253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.079 3.921 3 H 0.085 0.915 4 O -0.398 6.398 5 C 0.048 3.952 6 C -0.151 4.151 7 C -0.111 4.111 8 H 0.094 0.906 9 C 0.071 3.929 10 N -0.688 5.688 11 C 0.207 3.793 12 C -0.538 4.538 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.262 1.262 20 H 0.049 0.951 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.104 0.896 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.015 0.985 29 H 0.334 0.666 30 H 0.000 1.000 31 H -0.042 1.042 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 5.548 -11.028 14.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.102 0.898 4 O -0.318 6.318 5 C -0.028 4.028 6 C -0.189 4.189 7 C -0.130 4.130 8 H 0.112 0.888 9 C -0.059 4.059 10 N -0.318 5.318 11 C 0.080 3.920 12 C -0.576 4.576 13 H 0.084 0.916 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.186 1.186 20 H 0.068 0.932 21 H 0.095 0.905 22 H 0.087 0.913 23 H 0.122 0.878 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.151 0.849 30 H 0.018 0.982 31 H -0.024 1.024 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.596 6.075 -10.793 14.529 hybrid contribution -0.437 -1.258 0.501 1.423 sum 7.159 4.816 -10.292 13.430 Atomic orbital electron populations 1.22018 0.94046 1.02303 1.02804 1.22784 0.95250 0.95878 0.83942 0.89756 1.88833 1.40889 1.68181 1.33907 1.23670 0.87304 0.96915 0.94885 1.23202 1.00709 0.97913 0.97071 1.22547 0.96579 0.97774 0.96103 0.88766 1.22082 0.96183 0.97400 0.90210 1.60578 1.17115 1.34187 1.19944 1.19205 0.89303 0.91790 0.91751 1.21564 0.94016 1.34446 1.07588 0.91583 1.25996 0.95090 0.96971 1.01762 1.70099 1.03970 1.45547 1.37919 0.85292 0.78446 0.77887 0.78423 1.19759 1.20674 1.18603 0.93197 0.90549 0.91264 0.87827 0.90399 0.92094 0.88740 0.91729 0.96731 0.84867 0.98193 1.02435 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 8.40 71.98 0.60 -3.30 16 2 C 0.08 2.00 4.06 30.97 0.13 2.12 16 3 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 4 O -0.40 -10.67 11.19 -148.98 -1.67 -12.34 16 5 C 0.05 1.02 7.72 72.66 0.56 1.58 16 6 C -0.15 -3.72 5.87 31.90 0.19 -3.54 16 7 C -0.11 -3.07 3.29 -9.80 -0.03 -3.10 16 8 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 9 C 0.07 2.52 3.87 86.31 0.33 2.86 16 10 N -0.69 -29.91 6.49 -517.94 -3.36 -33.27 16 11 C 0.21 11.36 5.44 85.56 0.47 11.82 16 12 C -0.54 -31.07 9.32 25.60 0.24 -30.83 16 13 H 0.07 3.68 7.81 -2.91 -0.02 3.65 16 14 C 0.00 0.00 5.46 84.65 0.46 0.46 16 15 N -0.94 -57.13 13.29 21.45 0.28 -56.84 16 16 Si 0.98 44.36 29.54 68.60 2.03 46.39 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 20 H 0.05 1.42 6.72 -2.39 -0.02 1.40 16 21 H 0.08 1.86 6.85 -2.39 -0.02 1.85 16 22 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.68 7.83 -2.39 -0.02 1.66 16 26 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.06 2.35 6.67 -2.39 -0.02 2.33 16 28 H 0.01 0.55 6.85 -2.39 -0.02 0.54 16 29 H 0.33 13.72 7.92 -89.69 -0.71 13.01 16 30 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 31 H -0.04 -2.48 8.14 -2.38 -0.02 -2.50 16 32 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -64.85 259.34 0.61 -64.24 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.38 Total: 13.75 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 2.95 Total: -21.93 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -3.08 Total: -90.11 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -1.67 Total: -12.34 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -64.85 0.61 -64.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300377077.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.909 kcal (2) G-P(sol) polarization free energy of solvation -64.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds