Wall clock time and date at job start Mon Mar 30 2020 02:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01836 * 2 1 4 4 C 1.54268 * 110.03412 * 121.39209 * 2 1 3 5 5 C 1.54889 * 104.19557 * 95.67800 * 4 2 1 6 6 C 1.54886 * 102.75267 * 37.94067 * 5 4 2 7 7 C 1.53875 * 110.03401 * 238.61204 * 2 1 3 8 8 O 1.42901 * 110.03270 * 359.97438 * 7 2 1 9 9 C 1.52994 * 110.03731 * 121.42797 * 7 2 1 10 10 N 1.46497 * 109.47512 * 180.02562 * 9 7 2 11 11 C 1.36940 * 120.00343 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99585 * 0.02562 * 11 10 9 13 13 C 1.38806 * 119.99952 * 180.02562 * 11 10 9 14 14 N 1.31614 * 120.00291 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99772 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47300 * 59.99889 * 15 13 11 17 17 H 1.48504 * 109.47396 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47088 * 299.99867 * 15 13 11 19 19 H 1.09002 * 109.47153 * 300.69904 * 1 2 3 20 20 H 1.09001 * 109.46832 * 180.70094 * 1 2 3 21 21 H 1.09004 * 109.47261 * 60.70076 * 1 2 3 22 22 H 1.09005 * 110.48425 * 214.35099 * 4 2 1 23 23 H 1.08997 * 110.48497 * 336.86496 * 4 2 1 24 24 H 1.09000 * 110.75751 * 156.25853 * 5 4 2 25 25 H 1.09003 * 110.75020 * 279.44393 * 5 4 2 26 26 H 1.09000 * 110.48512 * 80.73684 * 6 5 4 27 27 H 1.08993 * 110.48832 * 203.24979 * 6 5 4 28 28 H 0.96702 * 114.00260 * 180.02562 * 8 7 2 29 29 H 1.09002 * 109.47136 * 300.00119 * 9 7 2 30 30 H 1.09001 * 109.47457 * 60.00024 * 9 7 2 31 31 H 0.97006 * 119.99965 * 0.02562 * 10 9 7 32 32 H 0.97008 * 119.99955 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 1.2372 5 6 2.3282 -2.1898 0.7200 6 6 2.8875 -1.9410 -0.7027 7 6 2.0571 -0.7529 -1.2341 8 8 0.9635 -1.2325 -2.0190 9 6 2.9408 0.1713 -2.0741 10 7 3.4351 -0.5572 -3.2451 11 6 4.2508 0.0709 -4.1481 12 1 4.5300 1.1031 -3.9968 13 6 4.7187 -0.6192 -5.2579 14 7 4.3788 -1.8773 -5.4420 15 14 5.8319 0.2373 -6.4894 16 1 7.0674 0.6956 -5.8047 17 1 6.1907 -0.7102 -7.5751 18 1 5.1231 1.4074 -7.0671 19 1 -0.3633 0.5247 0.8837 20 1 -0.3633 -1.0276 0.0126 21 1 -0.3634 0.5029 -0.8962 22 1 2.9812 -0.2993 1.5967 23 1 1.3070 -0.7667 2.0266 24 1 3.0677 -2.6925 1.3434 25 1 1.4036 -2.7658 0.6794 26 1 3.9440 -1.6769 -0.6564 27 1 2.7423 -2.8211 -1.3291 28 1 1.2311 -1.7169 -2.8120 29 1 2.3581 1.0323 -2.4016 30 1 3.7850 0.5110 -1.4741 31 1 3.1840 -1.4842 -3.3812 32 1 4.7055 -2.3595 -6.2178 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306208938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:54 Heat of formation + Delta-G solvation = -58.789624 kcal Electronic energy + Delta-G solvation = -13371.601611 eV Core-core repulsion = 11138.558333 eV Total energy + Delta-G solvation = -2233.043278 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.22081 -34.83921 -33.88530 -31.11976 -30.72534 -27.90648 -25.62398 -23.96195 -21.99219 -20.28131 -19.04745 -17.35093 -15.66076 -15.49097 -15.05954 -14.44895 -13.39524 -13.17608 -13.11948 -12.73293 -12.57758 -12.17554 -11.96076 -11.44849 -11.04468 -10.88627 -10.79391 -10.63252 -10.36804 -10.31607 -10.22401 -9.98805 -9.60716 -9.14539 -8.89236 -6.95457 -5.78774 -3.07545 3.43682 3.47899 3.48989 4.56992 4.64603 4.85827 4.92427 5.25194 5.50699 5.55521 5.65679 5.66671 5.82252 5.83915 5.94317 6.06889 6.10479 6.19910 6.23748 6.33325 6.45203 6.55912 6.61721 6.68696 6.81337 6.85610 7.68276 8.25967 8.41328 9.50765 10.06393 10.40900 11.44032 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.061167 B = 0.008462 C = 0.008295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.653815 B = 3308.266366 C = 3374.720296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.083 4.083 3 H 0.075 0.925 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.142 4.142 7 C 0.128 3.872 8 O -0.558 6.558 9 C 0.131 3.869 10 N -0.730 5.730 11 C -0.240 4.240 12 H 0.070 0.930 13 C -0.013 4.013 14 N -0.934 5.934 15 Si 0.909 3.091 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.286 1.286 19 H 0.041 0.959 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.379 0.621 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.381 0.619 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 0.946 11.451 12.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.102 4.102 3 H 0.093 0.907 4 C -0.157 4.157 5 C -0.159 4.159 6 C -0.180 4.180 7 C 0.087 3.913 8 O -0.366 6.366 9 C 0.003 3.997 10 N -0.375 5.375 11 C -0.371 4.371 12 H 0.088 0.912 13 C -0.209 4.209 14 N -0.583 5.583 15 Si 0.740 3.260 16 H -0.213 1.213 17 H -0.216 1.216 18 H -0.213 1.213 19 H 0.060 0.940 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.228 0.772 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.215 0.785 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.320 1.356 11.829 13.041 hybrid contribution 1.012 -0.115 -1.298 1.650 sum -4.308 1.240 10.531 11.445 Atomic orbital electron populations 1.21482 0.94304 1.01930 1.00480 1.21726 0.96823 0.98821 0.92814 0.90666 1.22436 1.00490 0.95887 0.96896 1.22445 1.00473 0.96453 0.96507 1.22991 1.00308 0.98638 0.96065 1.22001 0.85978 0.92836 0.90496 1.86405 1.33544 1.76207 1.40398 1.21387 0.94704 0.94286 0.89298 1.42263 1.58729 1.12681 1.23828 1.19175 1.21245 0.95636 1.01041 0.91234 1.24732 1.01191 0.96151 0.98845 1.69632 1.49419 1.08936 1.30313 0.86245 0.80546 0.78312 0.80942 1.21295 1.21648 1.21256 0.93994 0.92408 0.92345 0.91758 0.91773 0.92110 0.91695 0.90596 0.91222 0.77208 0.95755 0.95702 0.78544 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 8.08 37.16 0.30 -1.45 16 2 C -0.08 -1.23 3.15 -89.50 -0.28 -1.51 16 3 H 0.07 1.09 7.67 -51.93 -0.40 0.69 16 4 C -0.12 -1.53 6.37 -25.07 -0.16 -1.69 16 5 C -0.12 -1.65 6.91 -24.74 -0.17 -1.82 16 6 C -0.14 -2.36 5.57 -25.01 -0.14 -2.50 16 7 C 0.13 2.24 1.01 -89.44 -0.09 2.15 16 8 O -0.56 -10.22 11.12 -35.23 -0.39 -10.62 16 9 C 0.13 2.75 5.03 -4.05 -0.02 2.73 16 10 N -0.73 -18.44 5.17 -59.91 -0.31 -18.75 16 11 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 12 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 13 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 14 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 15 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 20 H 0.06 0.83 7.84 -51.93 -0.41 0.43 16 21 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 0.72 7.84 -51.93 -0.41 0.31 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 1.35 7.84 -51.93 -0.41 0.94 16 27 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 28 H 0.38 6.98 7.81 45.56 0.36 7.34 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.53 8.12 -51.93 -0.42 0.10 16 31 H 0.38 9.84 6.39 -40.82 -0.26 9.58 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 258.16 15.07 3.89 3.89 Total: -1.00 -29.83 258.16 -6.35 -36.19 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -4.43 Total: 10.57 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -0.81 Total: -11.48 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.41 Total: -46.06 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.39 Total: -10.62 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.83 -6.35 -36.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306208938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.605 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds