Wall clock time and date at job start Mon Mar 30 2020 02:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01836 * 2 1 4 4 C 1.54268 * 110.03412 * 121.39209 * 2 1 3 5 5 C 1.54889 * 104.19557 * 95.67800 * 4 2 1 6 6 C 1.54886 * 102.75267 * 37.94067 * 5 4 2 7 7 C 1.53875 * 110.03401 * 238.61204 * 2 1 3 8 8 O 1.42901 * 110.03270 * 359.97438 * 7 2 1 9 9 C 1.52994 * 110.03731 * 121.42797 * 7 2 1 10 10 N 1.46497 * 109.47512 * 180.02562 * 9 7 2 11 11 C 1.36940 * 120.00343 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99585 * 0.02562 * 11 10 9 13 13 C 1.38806 * 119.99952 * 180.02562 * 11 10 9 14 14 N 1.31614 * 120.00291 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99772 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47300 * 59.99889 * 15 13 11 17 17 H 1.48504 * 109.47396 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47088 * 299.99867 * 15 13 11 19 19 H 1.09002 * 109.47153 * 300.69904 * 1 2 3 20 20 H 1.09001 * 109.46832 * 180.70094 * 1 2 3 21 21 H 1.09004 * 109.47261 * 60.70076 * 1 2 3 22 22 H 1.09005 * 110.48425 * 214.35099 * 4 2 1 23 23 H 1.08997 * 110.48497 * 336.86496 * 4 2 1 24 24 H 1.09000 * 110.75751 * 156.25853 * 5 4 2 25 25 H 1.09003 * 110.75020 * 279.44393 * 5 4 2 26 26 H 1.09000 * 110.48512 * 80.73684 * 6 5 4 27 27 H 1.08993 * 110.48832 * 203.24979 * 6 5 4 28 28 H 0.96702 * 114.00260 * 180.02562 * 8 7 2 29 29 H 1.09002 * 109.47136 * 300.00119 * 9 7 2 30 30 H 1.09001 * 109.47457 * 60.00024 * 9 7 2 31 31 H 0.97006 * 119.99965 * 0.02562 * 10 9 7 32 32 H 0.97008 * 119.99955 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 1.2372 5 6 2.3282 -2.1898 0.7200 6 6 2.8875 -1.9410 -0.7027 7 6 2.0571 -0.7529 -1.2341 8 8 0.9635 -1.2325 -2.0190 9 6 2.9408 0.1713 -2.0741 10 7 3.4351 -0.5572 -3.2451 11 6 4.2508 0.0709 -4.1481 12 1 4.5300 1.1031 -3.9968 13 6 4.7187 -0.6192 -5.2579 14 7 4.3788 -1.8773 -5.4420 15 14 5.8319 0.2373 -6.4894 16 1 7.0674 0.6956 -5.8047 17 1 6.1907 -0.7102 -7.5751 18 1 5.1231 1.4074 -7.0671 19 1 -0.3633 0.5247 0.8837 20 1 -0.3633 -1.0276 0.0126 21 1 -0.3634 0.5029 -0.8962 22 1 2.9812 -0.2993 1.5967 23 1 1.3070 -0.7667 2.0266 24 1 3.0677 -2.6925 1.3434 25 1 1.4036 -2.7658 0.6794 26 1 3.9440 -1.6769 -0.6564 27 1 2.7423 -2.8211 -1.3291 28 1 1.2311 -1.7169 -2.8120 29 1 2.3581 1.0323 -2.4016 30 1 3.7850 0.5110 -1.4741 31 1 3.1840 -1.4842 -3.3812 32 1 4.7055 -2.3595 -6.2178 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306208938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:54 Heat of formation + Delta-G solvation = -79.313939 kcal Electronic energy + Delta-G solvation = -13372.491612 eV Core-core repulsion = 11138.558333 eV Total energy + Delta-G solvation = -2233.933279 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.57328 -36.44630 -35.59987 -33.10721 -31.93033 -29.54453 -26.93750 -25.76278 -23.63005 -21.58550 -20.36281 -19.34833 -17.23234 -16.86907 -16.52413 -16.27750 -15.06237 -14.94125 -14.71243 -14.19195 -13.85392 -13.39707 -13.25042 -13.09471 -12.95043 -12.66416 -12.22495 -12.12346 -11.99135 -11.80863 -11.46938 -11.37049 -11.19481 -10.98577 -10.62874 -9.05685 -7.98561 -5.28019 1.45758 1.48615 1.54900 2.53237 3.27416 3.39225 3.58278 3.66157 3.96015 4.11478 4.38505 4.45752 4.47817 4.61312 4.69134 4.74342 4.87537 5.01003 5.02751 5.09696 5.13787 5.21422 5.31496 5.40109 5.43582 5.48855 5.62025 6.22626 6.77465 7.29944 8.01635 8.27074 9.24158 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.061167 B = 0.008462 C = 0.008295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.653815 B = 3308.266366 C = 3374.720296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.085 4.085 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.143 4.143 7 C 0.128 3.872 8 O -0.561 6.561 9 C 0.131 3.869 10 N -0.738 5.738 11 C -0.252 4.252 12 H 0.072 0.928 13 C -0.071 4.071 14 N -0.965 5.965 15 Si 0.975 3.025 16 H -0.278 1.278 17 H -0.293 1.293 18 H -0.279 1.279 19 H 0.069 0.931 20 H 0.052 0.948 21 H 0.039 0.961 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.375 0.625 29 H 0.015 0.985 30 H 0.028 0.972 31 H 0.375 0.625 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.145 1.557 12.807 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.104 4.104 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.181 4.181 7 C 0.087 3.913 8 O -0.368 6.368 9 C 0.004 3.996 10 N -0.382 5.382 11 C -0.383 4.383 12 H 0.090 0.910 13 C -0.263 4.263 14 N -0.616 5.616 15 Si 0.803 3.197 16 H -0.204 1.204 17 H -0.219 1.219 18 H -0.205 1.205 19 H 0.088 0.912 20 H 0.071 0.929 21 H 0.058 0.942 22 H 0.092 0.908 23 H 0.107 0.893 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.223 0.777 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.208 0.792 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.400 1.993 13.217 14.416 hybrid contribution 1.014 -0.278 -1.698 1.997 sum -4.386 1.716 11.519 12.445 Atomic orbital electron populations 1.21441 0.93534 1.01767 1.00935 1.21803 0.97482 0.98868 0.92247 0.90390 1.22437 1.01610 0.94624 0.96303 1.22426 1.00920 0.97444 0.94369 1.22936 0.99382 0.97576 0.98169 1.22114 0.85545 0.92848 0.90782 1.86414 1.33926 1.76105 1.40339 1.21531 0.95128 0.94502 0.88435 1.42393 1.58498 1.12616 1.24708 1.19557 1.21260 0.95904 1.01627 0.91009 1.25552 1.03038 0.96928 1.00818 1.69784 1.50727 1.10257 1.30790 0.85204 0.78828 0.77242 0.78417 1.20404 1.21853 1.20528 0.91216 0.92903 0.94155 0.90815 0.89309 0.90349 0.91284 0.92127 0.92610 0.77675 0.96748 0.95458 0.79241 0.93837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 8.08 71.98 0.58 -2.50 16 2 C -0.09 -2.35 3.15 -10.07 -0.03 -2.38 16 3 H 0.08 2.11 7.67 -2.39 -0.02 2.09 16 4 C -0.11 -2.50 6.37 31.67 0.20 -2.30 16 5 C -0.11 -2.82 6.91 31.88 0.22 -2.60 16 6 C -0.14 -4.66 5.57 31.71 0.18 -4.48 16 7 C 0.13 4.42 1.01 -10.03 -0.01 4.41 16 8 O -0.56 -20.60 11.12 -148.98 -1.66 -22.26 16 9 C 0.13 5.52 5.03 86.38 0.43 5.96 16 10 N -0.74 -37.87 5.17 -343.47 -1.78 -39.65 16 11 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 12 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 13 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 14 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 15 Si 0.97 46.36 29.55 68.60 2.03 48.38 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 20 H 0.05 1.41 7.84 -2.39 -0.02 1.39 16 21 H 0.04 1.17 7.90 -2.38 -0.02 1.15 16 22 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.09 1.60 7.84 -2.39 -0.02 1.58 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 2.14 7.84 -2.39 -0.02 2.12 16 27 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 28 H 0.37 14.22 7.81 -74.06 -0.58 13.64 16 29 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.03 1.15 8.12 -2.39 -0.02 1.13 16 31 H 0.37 19.88 6.39 -92.70 -0.59 19.29 16 32 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -62.75 258.16 1.69 -61.06 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: -0.07 Total: 31.83 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 2.88 Total: -20.97 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -1.49 Total: -98.04 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -1.66 Total: -22.26 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -62.75 1.69 -61.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306208938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.251 kcal (2) G-P(sol) polarization free energy of solvation -62.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds