Wall clock time and date at job start Mon Mar 30 2020 02:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46201 * 2 1 4 4 C 1.53040 * 109.46128 * 119.96402 * 2 1 3 5 5 C 1.53121 * 109.27257 * 179.19296 * 4 2 1 6 6 H 1.08991 * 109.52344 * 62.32264 * 5 4 2 7 7 O 1.42904 * 109.51921 * 182.44531 * 5 4 2 8 8 C 1.53119 * 109.16399 * 302.34660 * 5 4 2 9 9 C 1.53039 * 109.27502 * 57.65827 * 8 5 4 10 10 N 1.46846 * 109.45850 * 240.02103 * 2 1 3 11 11 C 1.46893 * 111.00402 * 54.14498 * 10 2 1 12 12 C 1.50709 * 109.47156 * 64.54571 * 11 10 2 13 13 H 1.07998 * 119.99780 * 354.68629 * 12 11 10 14 14 C 1.37878 * 119.99998 * 174.68289 * 12 11 10 15 15 N 1.31509 * 120.00166 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99954 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47230 * 270.00275 * 16 14 12 18 18 H 1.48504 * 109.47155 * 30.00000 * 16 14 12 19 19 H 1.48493 * 109.47089 * 149.99983 * 16 14 12 20 20 H 1.09004 * 109.47093 * 173.59061 * 1 2 3 21 21 H 1.09003 * 109.47099 * 293.58833 * 1 2 3 22 22 H 1.08997 * 109.47491 * 53.59161 * 1 2 3 23 23 H 1.08991 * 109.50782 * 299.13801 * 4 2 1 24 24 H 1.09002 * 109.49991 * 59.22207 * 4 2 1 25 25 H 0.96698 * 114.00371 * 180.02562 * 7 5 4 26 26 H 1.08999 * 109.50153 * 177.59831 * 8 5 4 27 27 H 1.09001 * 109.50220 * 297.67563 * 8 5 4 28 28 H 1.08999 * 109.45845 * 180.80585 * 9 8 5 29 29 H 1.09001 * 109.46167 * 60.83610 * 9 8 5 30 30 H 1.08999 * 109.47344 * 304.55095 * 11 10 2 31 31 H 1.09000 * 109.47591 * 184.54786 * 11 10 2 32 32 H 0.97000 * 120.00577 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5710 -0.7358 1.2356 6 1 3.9457 0.2871 1.2683 7 8 4.0521 -1.4572 2.3715 8 6 4.0548 -1.4188 -0.0466 9 6 3.4864 -0.6777 -1.2590 10 7 2.0192 -0.6919 -1.1993 11 6 1.4372 -0.1109 -2.4165 12 6 1.9079 1.3128 -2.5683 13 1 2.5024 1.7707 -1.7915 14 6 1.5795 2.0307 -3.6987 15 7 1.9905 3.2728 -3.8313 16 14 0.5506 1.2389 -5.0418 17 1 1.4449 0.5758 -6.0245 18 1 -0.3577 0.2299 -4.4398 19 1 -0.2534 2.2812 -5.7288 20 1 -0.3633 -1.0213 -0.1147 21 1 -0.3633 0.4112 0.9418 22 1 -0.3634 0.6099 -0.8270 23 1 1.6895 -0.1979 2.1400 24 1 1.6654 -1.7443 1.2582 25 1 5.0162 -1.5066 2.4266 26 1 5.1439 -1.3947 -0.0830 27 1 3.7131 -2.4538 -0.0588 28 1 3.8174 -1.1701 -2.1734 29 1 3.8403 0.3532 -1.2532 30 1 0.3498 -0.1281 -2.3434 31 1 1.7523 -0.6920 -3.2832 32 1 1.7592 3.7780 -4.6264 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306318526.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:15 Heat of formation + Delta-G solvation = -81.507278 kcal Electronic energy + Delta-G solvation = -13516.821433 eV Core-core repulsion = 11282.793044 eV Total energy + Delta-G solvation = -2234.028389 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.42761 -37.61006 -34.87742 -33.25380 -32.91072 -28.98365 -27.87462 -24.97661 -23.34210 -22.07746 -20.66695 -18.80073 -18.01370 -16.93996 -16.40656 -15.97451 -15.67388 -15.39121 -14.54862 -14.43375 -14.07181 -13.42823 -13.24470 -13.04344 -12.71648 -12.62093 -12.43887 -12.18028 -12.09982 -11.86348 -11.68504 -11.44950 -11.19013 -10.77487 -10.72778 -8.98895 -8.31721 -6.36168 1.34898 1.36459 1.48450 2.33359 3.03730 3.18913 3.34190 3.88094 3.89024 4.19323 4.23060 4.47095 4.57867 4.63122 4.67191 4.88276 4.92495 4.99159 5.02985 5.04617 5.10176 5.24320 5.29081 5.31255 5.43959 5.56621 6.11582 6.36314 6.46159 6.70241 6.89301 7.30713 8.84569 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051323 B = 0.010184 C = 0.009694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.437742 B = 2748.814797 C = 2887.719049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.088 3.912 3 H 0.013 0.987 4 C -0.096 4.096 5 C 0.107 3.893 6 H 0.042 0.958 7 O -0.576 6.576 8 C -0.134 4.134 9 C 0.063 3.937 10 N -0.527 5.527 11 C 0.157 3.843 12 C -0.544 4.544 13 H 0.033 0.967 14 C 0.011 3.989 15 N -0.948 5.948 16 Si 0.946 3.054 17 H -0.268 1.268 18 H -0.245 1.245 19 H -0.285 1.285 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.042 0.958 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.393 0.607 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.012 0.988 30 H 0.039 0.961 31 H 0.026 0.974 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 -9.663 7.608 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 H 0.031 0.969 4 C -0.134 4.134 5 C 0.048 3.952 6 H 0.060 0.940 7 O -0.384 6.384 8 C -0.172 4.172 9 C -0.066 4.066 10 N -0.251 5.251 11 C 0.030 3.970 12 C -0.583 4.583 13 H 0.051 0.949 14 C -0.187 4.187 15 N -0.588 5.588 16 Si 0.770 3.230 17 H -0.193 1.193 18 H -0.169 1.169 19 H -0.211 1.211 20 H 0.087 0.913 21 H 0.090 0.910 22 H 0.061 0.939 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.243 0.757 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.030 0.970 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.428 -10.081 7.652 12.664 hybrid contribution 0.679 1.446 -1.139 1.962 sum 1.107 -8.636 6.513 10.873 Atomic orbital electron populations 1.21763 0.93635 1.02229 1.01692 1.21393 0.96303 0.94487 0.89950 0.96863 1.21522 0.93527 1.01838 0.96479 1.21732 0.94908 0.93577 0.84992 0.93973 1.86447 1.28271 1.77579 1.46089 1.22241 1.00848 1.00541 0.93564 1.21847 0.88369 0.97870 0.98464 1.62480 1.06919 1.53157 1.02542 1.20109 0.96041 0.91408 0.89479 1.21864 1.33405 0.98695 1.04358 0.94918 1.25902 0.96832 0.95081 1.00898 1.70074 1.47880 1.11217 1.29679 0.85715 0.79519 0.78733 0.79042 1.19293 1.16855 1.21088 0.91345 0.90955 0.93873 0.90637 0.90466 0.75726 0.89609 0.90357 0.91439 0.96967 0.94312 0.95559 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 8.54 71.98 0.61 -4.09 16 2 C 0.09 3.35 2.09 44.94 0.09 3.44 16 3 H 0.01 0.61 6.84 -2.39 -0.02 0.59 16 4 C -0.10 -3.01 5.03 30.65 0.15 -2.86 16 5 C 0.11 3.13 3.54 30.67 0.11 3.24 16 6 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 7 O -0.58 -14.56 13.32 -148.98 -1.98 -16.54 16 8 C -0.13 -3.89 5.72 30.65 0.18 -3.72 16 9 C 0.06 2.42 5.04 86.33 0.43 2.86 16 10 N -0.53 -21.64 4.69 -875.63 -4.11 -25.75 16 11 C 0.16 7.41 3.79 85.56 0.32 7.74 16 12 C -0.54 -30.63 8.27 25.60 0.21 -30.42 16 13 H 0.03 2.06 6.11 -2.91 -0.02 2.05 16 14 C 0.01 0.62 5.47 84.66 0.46 1.08 16 15 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 16 Si 0.95 43.71 27.37 68.60 1.88 45.59 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.25 -10.50 6.70 99.48 0.67 -9.84 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 20 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 21 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 22 H 0.04 1.69 6.62 -2.39 -0.02 1.68 16 23 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.39 6.24 9.09 -74.06 -0.67 5.57 16 26 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 28 H 0.07 2.55 8.12 -2.39 -0.02 2.53 16 29 H 0.01 0.54 6.75 -2.39 -0.02 0.52 16 30 H 0.04 1.81 5.51 -2.39 -0.01 1.80 16 31 H 0.03 1.23 7.28 -2.39 -0.02 1.21 16 32 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -65.56 249.34 -0.95 -66.52 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.38 Total: 11.53 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 2.58 Total: -22.73 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -3.81 Total: -84.37 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -1.98 Total: -16.54 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Total: -65.56 -0.95 -66.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306318526.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.989 kcal (2) G-P(sol) polarization free energy of solvation -65.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds