Wall clock time and date at job start Mon Mar 30 2020 02:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.50900 * 2 1 4 4 C 1.53296 * 109.55470 * 120.12296 * 2 1 3 5 5 N 1.47157 * 108.38244 * 172.25183 * 4 2 1 6 6 C 1.36936 * 120.98176 * 129.47579 * 5 4 2 7 7 H 1.07995 * 120.00650 * 207.80877 * 6 5 4 8 8 C 1.38815 * 119.99965 * 27.81443 * 6 5 4 9 9 N 1.31631 * 119.99976 * 14.16352 * 8 6 5 10 10 Si 1.86797 * 120.00249 * 194.16655 * 8 6 5 11 11 H 1.48491 * 109.47416 * 94.96424 * 10 8 6 12 12 H 1.48500 * 109.47112 * 214.96824 * 10 8 6 13 13 H 1.48502 * 109.46900 * 334.96350 * 10 8 6 14 14 C 1.47162 * 118.07738 * 309.50271 * 5 4 2 15 15 C 1.53002 * 109.64363 * 290.75327 * 14 5 4 16 16 C 1.53004 * 109.73215 * 170.19752 * 14 5 4 17 17 C 1.53293 * 108.37963 * 50.45201 * 14 5 4 18 18 O 1.42956 * 109.51373 * 239.89803 * 2 1 3 19 19 H 1.09005 * 109.47344 * 180.10698 * 1 2 3 20 20 H 1.09003 * 109.47562 * 300.10142 * 1 2 3 21 21 H 1.08998 * 109.47555 * 60.10062 * 1 2 3 22 22 H 1.08995 * 109.68296 * 291.97530 * 4 2 1 23 23 H 1.08997 * 109.68387 * 52.53454 * 4 2 1 24 24 H 0.96994 * 119.99823 * 180.02562 * 9 8 6 25 25 H 1.09001 * 109.47643 * 178.88923 * 15 14 5 26 26 H 1.09000 * 109.47506 * 298.89451 * 15 14 5 27 27 H 1.09005 * 109.46633 * 58.89322 * 15 14 5 28 28 H 1.08996 * 109.46701 * 301.05858 * 16 14 5 29 29 H 1.09005 * 109.46350 * 61.05154 * 16 14 5 30 30 H 1.08996 * 109.47280 * 181.05367 * 16 14 5 31 31 H 1.09003 * 109.51868 * 187.82853 * 17 14 5 32 32 H 1.08996 * 109.51164 * 67.72034 * 17 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0430 -0.7250 1.2495 5 7 3.5022 -0.8748 1.1326 6 6 4.3337 -0.4961 2.1527 7 1 5.3442 -0.1820 1.9374 8 6 3.8776 -0.5161 3.4636 9 7 2.7644 -1.1513 3.7635 10 14 4.8435 0.3583 4.8021 11 1 4.2887 1.7210 5.0031 12 1 4.7409 -0.4098 6.0688 13 1 6.2691 0.4589 4.3984 14 6 4.0427 -1.4431 -0.1127 15 6 3.6729 -2.9249 -0.2048 16 6 5.5648 -1.2890 -0.1329 17 6 3.4312 -0.6838 -1.2957 18 8 2.0074 -0.6758 -1.1657 19 1 -0.3634 -1.0277 0.0019 20 1 -0.3634 0.5154 0.8891 21 1 -0.3634 0.5122 -0.8908 22 1 1.8040 -0.1399 2.1375 23 1 1.5776 -1.7080 1.3206 24 1 2.4455 -1.1650 4.6794 25 1 4.0575 -3.3381 -1.1372 26 1 4.1093 -3.4614 0.6377 27 1 2.5883 -3.0308 -0.1805 28 1 5.8240 -0.2330 -0.0574 29 1 5.9959 -1.8300 0.7095 30 1 5.9587 -1.6941 -1.0649 31 1 3.7089 -1.1766 -2.2274 32 1 3.8020 0.3411 -1.3013 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306568108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:08 Heat of formation + Delta-G solvation = -30.131345 kcal Electronic energy + Delta-G solvation = -13969.869126 eV Core-core repulsion = 11738.068564 eV Total energy + Delta-G solvation = -2231.800562 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.77499 -35.03251 -33.23693 -31.29288 -29.08424 -26.94580 -25.60617 -24.79309 -22.82997 -20.67273 -18.43729 -16.30465 -15.79220 -15.14940 -14.28559 -14.12001 -13.79880 -13.23185 -12.96816 -12.41751 -11.86434 -11.58440 -11.36320 -11.33753 -11.06442 -10.95960 -10.79153 -10.65737 -10.30648 -10.15207 -10.00551 -9.74865 -9.43126 -8.69739 -8.46857 -6.62400 -5.76171 -3.20820 3.36774 3.43802 3.44994 4.45088 4.55989 5.26120 5.38164 5.68070 5.80957 5.87887 5.93178 6.06092 6.09695 6.23525 6.27411 6.37768 6.42976 6.61733 6.63683 6.71746 6.77454 6.84082 7.08193 7.11594 7.30014 7.64834 7.80763 8.06996 8.44043 9.20733 9.84175 10.42542 11.31292 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.034635 B = 0.015002 C = 0.012005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.232154 B = 1865.969744 C = 2331.812169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.058 3.942 3 H 0.046 0.954 4 C 0.151 3.849 5 N -0.585 5.585 6 C -0.248 4.248 7 H 0.072 0.928 8 C 0.001 3.999 9 N -0.905 5.905 10 Si 0.902 3.098 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.154 3.846 15 C -0.146 4.146 16 C -0.131 4.131 17 C 0.062 3.938 18 O -0.391 6.391 19 H 0.058 0.942 20 H 0.066 0.934 21 H 0.049 0.951 22 H 0.092 0.908 23 H 0.026 0.974 24 H 0.253 0.747 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.156 1.119 -6.941 7.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.001 4.001 3 H 0.064 0.936 4 C 0.026 3.974 5 N -0.309 5.309 6 C -0.377 4.377 7 H 0.089 0.911 8 C -0.198 4.198 9 N -0.549 5.549 10 Si 0.732 3.268 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.065 3.935 15 C -0.205 4.205 16 C -0.189 4.189 17 C -0.016 4.016 18 O -0.311 6.311 19 H 0.077 0.923 20 H 0.085 0.915 21 H 0.068 0.932 22 H 0.110 0.890 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.332 1.018 -6.882 6.965 hybrid contribution 0.609 0.468 1.033 1.287 sum 0.276 1.486 -5.849 6.042 Atomic orbital electron populations 1.21657 0.94424 1.02154 1.01162 1.22890 0.93676 0.95479 0.88028 0.93640 1.21420 0.83561 0.97948 0.94499 1.44222 1.01896 1.71287 1.13460 1.19232 0.96541 1.36880 0.85061 0.91063 1.25096 0.98090 0.99376 0.97207 1.70018 1.23377 1.43342 1.18205 0.86266 0.79596 0.79221 0.81668 1.21551 1.21799 1.20421 1.20580 0.92868 0.91840 0.88166 1.22114 1.01435 0.97611 0.99372 1.21768 0.95235 1.01521 1.00327 1.22951 0.81573 0.99034 0.98077 1.87751 1.20941 1.78062 1.44320 0.92329 0.91482 0.93150 0.89008 0.95543 0.93704 0.94605 0.93006 0.93025 0.92853 0.91771 0.94020 0.90418 0.94125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.57 37.15 0.36 -1.99 16 2 C 0.06 1.21 3.40 -26.58 -0.09 1.12 16 3 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.15 3.71 4.31 -3.53 -0.02 3.69 16 5 N -0.59 -14.73 2.74 -157.06 -0.43 -15.16 16 6 C -0.25 -6.69 8.73 -15.06 -0.13 -6.82 16 7 H 0.07 1.88 6.20 -52.49 -0.33 1.55 16 8 C 0.00 0.02 5.00 -17.42 -0.09 -0.07 16 9 N -0.90 -26.16 11.09 55.49 0.62 -25.55 16 10 Si 0.90 21.66 29.58 -169.99 -5.03 16.64 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.15 3.28 1.04 -131.30 -0.14 3.14 16 15 C -0.15 -3.00 8.54 37.16 0.32 -2.68 16 16 C -0.13 -2.50 7.24 37.16 0.27 -2.23 16 17 C 0.06 1.20 5.66 37.31 0.21 1.41 16 18 O -0.39 -8.15 10.03 -35.23 -0.35 -8.51 16 19 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 20 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 23 H 0.03 0.70 7.64 -51.93 -0.40 0.30 16 24 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.05 1.12 7.21 -51.93 -0.37 0.75 16 28 H 0.05 1.02 7.57 -51.93 -0.39 0.63 16 29 H 0.06 1.31 7.58 -51.93 -0.39 0.92 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 252.20 15.07 3.80 3.80 Total: -1.00 -29.19 252.20 -5.85 -35.04 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.14 Total: -1.83 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 0.69 Total: -4.43 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.19 Total: -40.70 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.35 Total: -8.51 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.19 -5.85 -35.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306568108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.908 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds