Wall clock time and date at job start Mon Mar 30 2020 02:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.45869 * 2 1 4 4 C 1.53031 * 109.45302 * 240.02497 * 2 1 3 5 5 C 1.53121 * 109.27820 * 180.80937 * 4 2 1 6 6 C 1.53095 * 109.15465 * 57.65513 * 5 4 2 7 7 H 1.08999 * 109.50652 * 62.28510 * 6 5 4 8 8 O 1.42894 * 109.48945 * 182.39895 * 6 5 4 9 9 C 1.53039 * 109.29043 * 302.33925 * 6 5 4 10 10 N 1.46846 * 109.51492 * 59.18336 * 9 6 5 11 11 C 1.46902 * 111.00192 * 174.16604 * 10 9 6 12 12 C 1.50704 * 109.46808 * 292.88060 * 11 10 9 13 13 H 1.07997 * 120.00160 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99566 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00035 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99760 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47483 * 59.99615 * 16 14 12 18 18 H 1.48504 * 109.47249 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46722 * 299.99473 * 16 14 12 20 20 H 1.09007 * 109.46934 * 307.08153 * 1 2 3 21 21 H 1.09001 * 109.47412 * 67.07836 * 1 2 3 22 22 H 1.08994 * 109.47257 * 187.08499 * 1 2 3 23 23 H 1.08995 * 109.50398 * 300.75150 * 4 2 1 24 24 H 1.09006 * 109.50303 * 60.87254 * 4 2 1 25 25 H 1.09000 * 109.52295 * 177.56267 * 5 4 2 26 26 H 1.09004 * 109.52191 * 297.68475 * 5 4 2 27 27 H 0.96702 * 114.00350 * 299.80816 * 8 6 5 28 28 H 1.08996 * 109.46326 * 299.17390 * 9 6 5 29 29 H 1.08999 * 109.46133 * 179.19024 * 9 6 5 30 30 H 1.08997 * 109.46580 * 52.87754 * 11 10 9 31 31 H 1.08997 * 109.47271 * 172.88189 * 11 10 9 32 32 H 0.97005 * 119.99808 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7209 -1.2499 5 6 3.5707 -0.7363 -1.2357 6 6 4.0544 -1.4191 0.0464 7 1 3.7119 -2.4538 0.0591 8 8 5.4822 -1.3877 0.0937 9 6 3.4865 -0.6779 1.2589 10 7 2.0193 -0.6918 1.1994 11 6 1.4374 -0.1105 2.4166 12 6 1.7342 -1.0057 3.5921 13 1 2.2989 -1.9151 3.4493 14 6 1.2847 -0.6636 4.8498 15 7 0.5975 0.4442 5.0238 16 14 1.6531 -1.7727 6.3070 17 1 3.1232 -1.8994 6.4736 18 1 1.0648 -1.1853 7.5375 19 1 1.0644 -3.1151 6.0685 20 1 -0.3633 0.6197 0.8199 21 1 -0.3634 0.4002 -0.9465 22 1 -0.3633 -1.0197 0.1267 23 1 1.6655 -1.7446 -1.2576 24 1 1.6893 -0.1981 -2.1399 25 1 3.9375 -1.2866 -2.1022 26 1 3.9456 0.2867 -1.2686 27 1 5.9103 -1.8398 -0.6461 28 1 3.8405 0.3529 1.2530 29 1 3.8174 -1.1704 2.1733 30 1 1.8703 0.8744 2.5915 31 1 0.3584 -0.0168 2.2946 32 1 0.2816 0.6851 5.9087 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306606215.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:03 Heat of formation + Delta-G solvation = -82.902214 kcal Electronic energy + Delta-G solvation = -13379.735527 eV Core-core repulsion = 11145.646648 eV Total energy + Delta-G solvation = -2234.088878 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.37190 -37.49681 -35.21364 -33.42258 -32.44058 -29.07811 -27.34980 -25.46512 -23.27355 -22.17666 -20.60371 -18.55717 -18.14675 -16.96564 -16.41974 -15.84025 -15.53276 -15.25335 -14.67296 -14.21893 -14.09442 -13.65083 -13.35644 -13.08542 -12.72122 -12.67710 -12.49829 -12.35150 -12.11466 -11.76083 -11.71162 -11.30256 -11.04412 -10.69892 -10.58213 -9.07516 -8.21541 -6.31360 1.39080 1.42623 1.50480 2.38975 2.91688 3.11311 3.69131 3.82291 3.94295 3.99129 4.21110 4.38995 4.46398 4.63838 4.75587 4.83840 4.90280 4.99050 5.02794 5.08297 5.13085 5.20849 5.32133 5.35826 5.47740 5.64648 6.05159 6.30862 6.64032 6.83588 6.96364 7.37662 8.89257 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.037640 B = 0.010729 C = 0.008809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.720796 B = 2609.213691 C = 3177.970776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.066 3.934 3 H 0.016 0.984 4 C -0.099 4.099 5 C -0.142 4.142 6 C 0.114 3.886 7 H 0.065 0.935 8 O -0.585 6.585 9 C 0.073 3.927 10 N -0.531 5.531 11 C 0.205 3.795 12 C -0.527 4.527 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.266 1.266 20 H 0.032 0.968 21 H 0.086 0.914 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.397 0.603 28 H 0.006 0.994 29 H 0.056 0.944 30 H -0.049 1.049 31 H 0.027 0.973 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.122 -3.615 -13.074 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.042 4.042 3 H 0.034 0.966 4 C -0.137 4.137 5 C -0.180 4.180 6 C 0.055 3.945 7 H 0.083 0.917 8 O -0.393 6.393 9 C -0.056 4.056 10 N -0.257 5.257 11 C 0.079 3.921 12 C -0.565 4.565 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.793 3.207 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.190 1.190 20 H 0.051 0.949 21 H 0.104 0.896 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.247 0.753 28 H 0.024 0.976 29 H 0.075 0.925 30 H -0.031 1.031 31 H 0.045 0.955 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.771 -3.664 -12.442 13.507 hybrid contribution 0.370 0.522 0.840 1.056 sum 4.141 -3.142 -11.602 12.713 Atomic orbital electron populations 1.21816 0.93921 1.02053 1.01636 1.21835 0.96219 0.94714 0.91447 0.96605 1.21553 0.94639 1.01612 0.95897 1.22252 0.96560 1.01416 0.97748 1.21654 0.80063 0.98662 0.94082 0.91676 1.86448 1.18940 1.80991 1.52894 1.21690 0.88277 0.97261 0.98372 1.61947 1.05530 1.55282 1.02944 1.19474 0.94564 0.91249 0.86853 1.21454 1.34520 1.07693 0.92854 0.92278 1.25903 0.94882 0.96842 1.01971 1.70077 1.38229 1.25227 1.23861 0.85454 0.78615 0.78950 0.77726 1.19617 1.20572 1.19041 0.94854 0.89561 0.92309 0.90660 0.88760 0.88248 0.92366 0.75304 0.97606 0.92539 1.03118 0.95484 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 8.55 71.98 0.62 -4.03 16 2 C 0.07 2.40 2.44 44.94 0.11 2.51 16 3 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 4 C -0.10 -2.60 5.37 30.65 0.16 -2.44 16 5 C -0.14 -3.53 5.63 30.67 0.17 -3.36 16 6 C 0.11 3.62 3.63 30.64 0.11 3.74 16 7 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 8 O -0.58 -17.05 13.32 -148.98 -1.98 -19.04 16 9 C 0.07 3.13 4.95 86.33 0.43 3.56 16 10 N -0.53 -23.92 4.47 -875.66 -3.92 -27.84 16 11 C 0.20 11.35 4.46 85.56 0.38 11.73 16 12 C -0.53 -31.09 8.44 25.60 0.22 -30.88 16 13 H 0.06 3.44 7.21 -2.91 -0.02 3.42 16 14 C 0.00 0.12 5.46 84.65 0.46 0.58 16 15 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 16 Si 0.97 45.58 29.54 68.60 2.03 47.60 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 H 0.03 1.30 6.51 -2.38 -0.02 1.28 16 21 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 22 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.40 6.80 9.08 -74.06 -0.67 6.12 16 28 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.06 2.74 6.79 -2.39 -0.02 2.73 16 30 H -0.05 -3.01 8.11 -2.39 -0.02 -3.03 16 31 H 0.03 1.57 5.75 -2.39 -0.01 1.56 16 32 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -68.90 255.92 -0.51 -69.42 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.42 Total: 5.67 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 2.66 Total: -18.60 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -3.63 Total: -85.05 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -1.98 Total: -19.04 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -68.90 -0.51 -69.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306606215.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.486 kcal (2) G-P(sol) polarization free energy of solvation -68.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds