Wall clock time and date at job start Mon Mar 30 2020 02:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45321 * 2 1 4 4 C 1.53033 * 109.46169 * 240.02145 * 2 1 3 5 5 H 1.08996 * 109.54025 * 300.76639 * 4 2 1 6 6 O 1.42904 * 109.50273 * 60.86704 * 4 2 1 7 7 C 1.53118 * 109.27863 * 180.80437 * 4 2 1 8 8 C 1.53121 * 109.16052 * 57.65592 * 7 4 2 9 9 C 1.53031 * 109.27934 * 302.34356 * 8 7 4 10 10 N 1.46846 * 109.46168 * 119.96929 * 2 1 3 11 11 C 1.46900 * 111.00283 * 305.85169 * 10 2 1 12 12 C 1.50701 * 109.47261 * 168.72969 * 11 10 2 13 13 H 1.08002 * 119.99714 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99807 * 180.02562 * 12 11 10 15 15 N 1.31523 * 119.99788 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00171 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47467 * 89.99802 * 16 14 12 18 18 H 1.48508 * 109.47160 * 209.99633 * 16 14 12 19 19 H 1.48493 * 109.47118 * 329.99480 * 16 14 12 20 20 H 1.08993 * 109.47197 * 186.96968 * 1 2 3 21 21 H 1.08998 * 109.46691 * 306.96743 * 1 2 3 22 22 H 1.08998 * 109.46902 * 66.96397 * 1 2 3 23 23 H 0.96703 * 114.00088 * 179.80302 * 6 4 2 24 24 H 1.09000 * 109.52187 * 177.56301 * 7 4 2 25 25 H 1.09000 * 109.52206 * 297.75011 * 7 4 2 26 26 H 1.09000 * 109.49885 * 62.28707 * 8 7 4 27 27 H 1.09006 * 109.50180 * 182.36233 * 8 7 4 28 28 H 1.09000 * 109.46489 * 179.19142 * 9 8 7 29 29 H 1.08997 * 109.46916 * 299.17760 * 9 8 7 30 30 H 1.08998 * 109.47154 * 288.73335 * 11 10 2 31 31 H 1.09008 * 109.46819 * 48.73534 * 11 10 2 32 32 H 0.96996 * 120.00049 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7210 -1.2499 5 1 1.6659 -1.7447 -1.2582 6 8 1.5805 -0.0357 -2.4167 7 6 3.5709 -0.7361 -1.2355 8 6 4.0548 -1.4188 0.0468 9 6 3.4866 -0.6776 1.2591 10 7 2.0193 -0.6916 1.1994 11 6 1.4374 -0.1104 2.4166 12 6 1.7354 -1.0046 3.5924 13 1 2.3009 -1.9136 3.4498 14 6 1.2861 -0.6622 4.8501 15 7 1.5466 -1.4424 5.8764 16 14 0.3074 0.9096 5.0965 17 1 -1.1400 0.6231 4.9288 18 1 0.5525 1.4363 6.4633 19 1 0.7316 1.9192 4.0936 20 1 -0.3633 -1.0200 0.1247 21 1 -0.3633 0.6180 0.8211 22 1 -0.3633 0.4021 -0.9457 23 1 1.8694 -0.4369 -3.2478 24 1 3.9379 -1.2864 -2.1019 25 1 3.9456 0.2869 -1.2672 26 1 3.7124 -2.4536 0.0596 27 1 5.1440 -1.3953 0.0829 28 1 3.8175 -1.1698 2.1737 29 1 3.8402 0.3534 1.2531 30 1 1.8692 0.8751 2.5909 31 1 0.3581 -0.0178 2.2949 32 1 1.2308 -1.2014 6.7613 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306819744.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:04 Heat of formation + Delta-G solvation = -53.974986 kcal Electronic energy + Delta-G solvation = -13460.015065 eV Core-core repulsion = 11227.180565 eV Total energy + Delta-G solvation = -2232.834500 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.08002 -36.01008 -33.24427 -32.31376 -30.74362 -27.49292 -26.25008 -23.59610 -21.32811 -20.66282 -19.23728 -17.09798 -16.75593 -15.18966 -14.66004 -14.42798 -14.05315 -13.67249 -13.38376 -12.83280 -12.56225 -12.26083 -11.82630 -11.45777 -11.41829 -11.11413 -10.84170 -10.53385 -10.47805 -10.25739 -9.88450 -9.71092 -9.54297 -9.21257 -8.54455 -7.36731 -6.04432 -4.01213 3.29257 3.36656 3.39405 4.20748 4.43040 4.91324 5.03233 5.08463 5.27544 5.33066 5.52779 5.78586 5.79020 5.90833 6.06241 6.07858 6.13908 6.20762 6.40708 6.43764 6.60676 6.70231 6.74156 6.91871 7.01033 7.62083 7.76443 7.92620 8.09348 8.67147 9.03929 9.57588 11.08666 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047818 B = 0.010577 C = 0.009187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.409534 B = 2646.622315 C = 3047.174346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.033 0.967 4 C 0.112 3.888 5 H 0.063 0.937 6 O -0.570 6.570 7 C -0.150 4.150 8 C -0.115 4.115 9 C 0.060 3.940 10 N -0.521 5.521 11 C 0.159 3.841 12 C -0.507 4.507 13 H 0.081 0.919 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.873 3.127 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.268 1.268 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.372 0.628 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.020 0.980 30 H -0.013 1.013 31 H 0.033 0.967 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 2.217 -13.487 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 H 0.051 0.949 4 C 0.053 3.947 5 H 0.081 0.919 6 O -0.374 6.374 7 C -0.188 4.188 8 C -0.153 4.153 9 C -0.068 4.068 10 N -0.247 5.247 11 C 0.034 3.966 12 C -0.546 4.546 13 H 0.099 0.901 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.700 3.300 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.193 1.193 20 H 0.081 0.919 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.218 0.782 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.038 0.962 30 H 0.005 0.995 31 H 0.051 0.949 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.563 2.109 -12.862 13.127 hybrid contribution 0.056 1.290 -0.047 1.292 sum 1.619 3.399 -12.909 13.447 Atomic orbital electron populations 1.21835 0.94379 1.02542 1.01128 1.21386 0.95841 0.95080 0.89808 0.94870 1.21812 0.92207 0.95497 0.85145 0.91912 1.86476 1.77642 1.57403 1.15866 1.22308 0.96710 1.01205 0.98596 1.21570 0.99425 1.00418 0.93887 1.22023 0.88230 0.97905 0.98641 1.61836 1.06415 1.54729 1.01753 1.20254 0.95168 0.93681 0.87542 1.21032 1.35185 1.08461 0.89887 0.90119 1.24884 0.95921 0.96570 0.95944 1.69894 1.46735 1.37635 0.99745 0.86897 0.81031 0.84499 0.77594 1.20075 1.21192 1.19259 0.91866 0.92562 0.92286 0.78166 0.92285 0.91870 0.91129 0.91874 0.89004 0.96191 0.99509 0.94888 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.50 37.16 0.32 -2.19 16 2 C 0.09 1.63 2.18 -67.72 -0.15 1.48 16 3 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.11 1.71 3.06 -26.65 -0.08 1.63 16 5 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 6 O -0.57 -7.80 12.57 -35.23 -0.44 -8.24 16 7 C -0.15 -2.06 5.63 -26.61 -0.15 -2.21 16 8 C -0.11 -1.75 6.09 -26.65 -0.16 -1.92 16 9 C 0.06 1.17 5.30 -3.83 -0.02 1.15 16 10 N -0.52 -11.13 4.47 -228.12 -1.02 -12.15 16 11 C 0.16 3.93 3.53 -4.98 -0.02 3.91 16 12 C -0.51 -14.46 8.99 -34.44 -0.31 -14.77 16 13 H 0.08 2.49 7.45 -52.49 -0.39 2.10 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 16 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 20 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 21 H 0.06 1.03 6.51 -51.93 -0.34 0.70 16 22 H 0.06 0.95 7.51 -51.93 -0.39 0.56 16 23 H 0.37 3.28 9.08 45.56 0.41 3.70 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.97 6.79 -51.93 -0.35 1.62 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H -0.01 -0.32 7.17 -51.93 -0.37 -0.70 16 31 H 0.03 0.81 5.17 -51.92 -0.27 0.54 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 251.11 15.07 3.78 3.78 Total: -1.00 -31.06 251.11 -6.49 -37.55 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.25 Total: -0.06 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -0.67 Total: -11.02 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: -0.25 Total: -39.03 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.44 Total: -8.24 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.06 -6.49 -37.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306819744.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.426 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds