Wall clock time and date at job start Mon Mar 30 2020 02:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46197 * 2 1 4 4 C 1.53035 * 109.46169 * 119.97872 * 2 1 3 5 5 C 1.53120 * 109.27955 * 179.19624 * 4 2 1 6 6 C 1.53126 * 109.15989 * 302.34788 * 5 4 2 7 7 H 1.08998 * 109.49932 * 297.70855 * 6 5 4 8 8 O 1.42901 * 109.50109 * 177.59632 * 6 5 4 9 9 C 1.53031 * 109.27636 * 57.65423 * 6 5 4 10 10 N 1.46827 * 109.46940 * 240.02807 * 2 1 3 11 11 C 1.46905 * 110.98383 * 54.14042 * 10 2 1 12 12 C 1.50702 * 109.46798 * 191.42686 * 11 10 2 13 13 H 1.07993 * 120.00396 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99497 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00030 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99765 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47339 * 60.00354 * 16 14 12 18 18 H 1.48505 * 109.47264 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47598 * 300.00534 * 16 14 12 20 20 H 1.08993 * 109.47178 * 293.12065 * 1 2 3 21 21 H 1.09000 * 109.46971 * 53.12721 * 1 2 3 22 22 H 1.08997 * 109.47008 * 173.12151 * 1 2 3 23 23 H 1.08999 * 109.50569 * 59.25845 * 4 2 1 24 24 H 1.08995 * 109.53832 * 299.15807 * 4 2 1 25 25 H 1.09000 * 109.52677 * 182.44227 * 5 4 2 26 26 H 1.08999 * 109.52303 * 62.25091 * 5 4 2 27 27 H 0.96693 * 114.00288 * 60.19720 * 8 6 5 28 28 H 1.08992 * 109.46951 * 60.83957 * 9 6 5 29 29 H 1.09003 * 109.46276 * 180.81721 * 9 6 5 30 30 H 1.09000 * 109.47029 * 311.42206 * 11 10 2 31 31 H 1.08995 * 109.47130 * 71.42555 * 11 10 2 32 32 H 0.97004 * 119.99735 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5709 -0.7361 1.2356 6 6 4.0548 -1.4187 -0.0469 7 1 3.7126 -2.4535 -0.0597 8 8 5.4827 -1.3871 -0.0946 9 6 3.4865 -0.6775 -1.2591 10 7 2.0194 -0.6916 -1.1992 11 6 1.4372 -0.1102 -2.4162 12 6 1.7319 -1.0062 -3.5915 13 1 2.2949 -1.9166 -3.4487 14 6 1.2817 -0.6641 -4.8490 15 7 0.5956 0.4444 -5.0229 16 14 1.6476 -1.7743 -6.3060 17 1 1.0576 -3.1159 -6.0666 18 1 1.0589 -1.1866 -7.5363 19 1 3.1175 -1.9028 -6.4738 20 1 -0.3633 0.4035 0.9451 21 1 -0.3633 0.6166 -0.8221 22 1 -0.3633 -1.0202 -0.1231 23 1 1.6660 -1.7448 1.2574 24 1 1.6895 -0.1990 2.1402 25 1 3.9379 -1.2865 2.1019 26 1 3.9457 0.2869 1.2673 27 1 5.9110 -1.8393 0.6451 28 1 3.8404 0.3534 -1.2531 29 1 3.8174 -1.1696 -2.1737 30 1 0.3583 -0.0152 -2.2933 31 1 1.8709 0.8742 -2.5920 32 1 0.2786 0.6849 -5.9075 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306887953.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:07 Heat of formation + Delta-G solvation = -82.849883 kcal Electronic energy + Delta-G solvation = -13379.755322 eV Core-core repulsion = 11145.668713 eV Total energy + Delta-G solvation = -2234.086609 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.37255 -37.49708 -35.21329 -33.42215 -32.44163 -29.07828 -27.35099 -25.46443 -23.27442 -22.17608 -20.60415 -18.55725 -18.14681 -16.96578 -16.42012 -15.84068 -15.53268 -15.25318 -14.67346 -14.21863 -14.09481 -13.65091 -13.35727 -13.08445 -12.72145 -12.67712 -12.49713 -12.35178 -12.11487 -11.76086 -11.71221 -11.30228 -11.04454 -10.69826 -10.58163 -9.07524 -8.21533 -6.31334 1.39089 1.42603 1.50482 2.38987 2.91682 3.11316 3.69159 3.82254 3.94243 3.99121 4.21078 4.38991 4.46381 4.63861 4.75615 4.83844 4.90274 4.99031 5.02810 5.08265 5.13071 5.20907 5.32207 5.35794 5.47735 5.64687 6.05217 6.30900 6.64065 6.83620 6.96373 7.37673 8.89271 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.037643 B = 0.010727 C = 0.008809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.655563 B = 2609.521155 C = 3177.849663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.066 3.934 3 H 0.016 0.984 4 C -0.099 4.099 5 C -0.142 4.142 6 C 0.114 3.886 7 H 0.065 0.935 8 O -0.585 6.585 9 C 0.073 3.927 10 N -0.531 5.531 11 C 0.204 3.796 12 C -0.527 4.527 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.271 1.271 20 H 0.086 0.914 21 H 0.032 0.968 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.397 0.603 28 H 0.006 0.994 29 H 0.056 0.944 30 H 0.027 0.973 31 H -0.049 1.049 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 -3.614 13.072 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.042 4.042 3 H 0.034 0.966 4 C -0.137 4.137 5 C -0.180 4.180 6 C 0.055 3.945 7 H 0.083 0.917 8 O -0.393 6.393 9 C -0.056 4.056 10 N -0.257 5.257 11 C 0.078 3.922 12 C -0.565 4.565 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.793 3.207 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.196 1.196 20 H 0.104 0.896 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.076 0.924 27 H 0.247 0.753 28 H 0.024 0.976 29 H 0.075 0.925 30 H 0.045 0.955 31 H -0.031 1.031 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.772 -3.663 12.440 13.505 hybrid contribution 0.369 0.520 -0.840 1.055 sum 4.141 -3.143 11.600 12.711 Atomic orbital electron populations 1.21815 0.93920 1.02065 1.01630 1.21832 0.96218 0.94713 0.91447 0.96609 1.21552 0.94638 1.01614 0.95900 1.22258 0.96558 1.01410 0.97746 1.21660 0.80061 0.98662 0.94087 0.91677 1.86448 1.18935 1.80982 1.52905 1.21688 0.88275 0.97261 0.98374 1.61943 1.05522 1.55289 1.02946 1.19476 0.94564 0.91255 0.86857 1.21454 1.34588 1.07608 0.92869 0.92280 1.25902 0.94882 0.96847 1.01969 1.70076 1.38232 1.25203 1.23882 0.85455 0.78615 0.78949 0.77727 1.19042 1.20572 1.19618 0.89568 0.94845 0.92303 0.90667 0.88760 0.88242 0.92369 0.75306 0.97603 0.92543 0.95474 1.03113 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 8.56 71.98 0.62 -4.03 16 2 C 0.07 2.40 2.44 44.94 0.11 2.51 16 3 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 4 C -0.10 -2.60 5.37 30.65 0.16 -2.44 16 5 C -0.14 -3.53 5.63 30.68 0.17 -3.36 16 6 C 0.11 3.62 3.63 30.65 0.11 3.73 16 7 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 8 O -0.58 -17.05 13.32 -148.98 -1.98 -19.04 16 9 C 0.07 3.13 4.95 86.32 0.43 3.56 16 10 N -0.53 -23.92 4.47 -875.71 -3.92 -27.83 16 11 C 0.20 11.34 4.46 85.56 0.38 11.72 16 12 C -0.53 -31.09 8.44 25.60 0.22 -30.87 16 13 H 0.06 3.44 7.22 -2.91 -0.02 3.42 16 14 C 0.00 0.12 5.46 84.66 0.46 0.58 16 15 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 16 Si 0.97 45.58 29.54 68.60 2.03 47.60 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 21 H 0.03 1.30 6.50 -2.39 -0.02 1.29 16 22 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.40 6.80 9.08 -74.06 -0.67 6.13 16 28 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.06 2.74 6.80 -2.39 -0.02 2.72 16 30 H 0.03 1.57 5.74 -2.39 -0.01 1.56 16 31 H -0.05 -3.01 8.11 -2.39 -0.02 -3.02 16 32 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -68.90 255.91 -0.51 -69.41 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.42 Total: 5.68 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 2.66 Total: -18.60 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -3.63 Total: -85.05 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -1.98 Total: -19.04 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -68.90 -0.51 -69.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306887953.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.441 kcal (2) G-P(sol) polarization free energy of solvation -68.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds