Wall clock time and date at job start Mon Mar 30 2020 02:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.51225 * 2 1 4 4 C 1.53292 * 109.51194 * 239.89305 * 2 1 3 5 5 N 1.47152 * 108.38091 * 187.77392 * 4 2 1 6 6 C 1.36943 * 120.98058 * 230.51214 * 5 4 2 7 7 H 1.08001 * 119.99793 * 153.77207 * 6 5 4 8 8 C 1.38808 * 120.00054 * 333.77396 * 6 5 4 9 9 N 1.31625 * 119.99990 * 343.09408 * 8 6 5 10 10 Si 1.86797 * 119.99971 * 163.09510 * 8 6 5 11 11 H 1.48504 * 109.46947 * 270.00278 * 10 8 6 12 12 H 1.48504 * 109.47331 * 29.99721 * 10 8 6 13 13 H 1.48500 * 109.47169 * 150.00132 * 10 8 6 14 14 C 1.47146 * 118.03703 * 50.79248 * 5 4 2 15 15 H 1.09003 * 109.68399 * 189.48740 * 14 5 4 16 16 C 1.52992 * 109.68564 * 68.93159 * 14 5 4 17 17 C 1.53718 * 108.15847 * 309.15328 * 14 5 4 18 18 H 1.09000 * 109.70124 * 292.54747 * 17 14 5 19 19 C 1.53001 * 109.44302 * 172.37419 * 17 14 5 20 20 O 1.42959 * 109.14917 * 52.53995 * 17 14 5 21 21 H 1.09000 * 109.47067 * 180.10406 * 1 2 3 22 22 H 1.08999 * 109.47338 * 300.10302 * 1 2 3 23 23 H 1.09001 * 109.47247 * 60.10634 * 1 2 3 24 24 H 1.09002 * 109.67709 * 68.05382 * 4 2 1 25 25 H 1.08997 * 109.71639 * 307.51460 * 4 2 1 26 26 H 0.97002 * 119.99823 * 179.97438 * 9 8 6 27 27 H 1.09000 * 109.47412 * 60.00138 * 16 14 5 28 28 H 1.09006 * 109.47444 * 180.02562 * 16 14 5 29 29 H 1.08997 * 109.47437 * 300.00263 * 16 14 5 30 30 H 1.09001 * 109.47212 * 300.39348 * 19 17 14 31 31 H 1.09003 * 109.47158 * 60.38677 * 19 17 14 32 32 H 1.08995 * 109.47599 * 180.38828 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7248 -1.2500 5 7 3.5012 -0.8758 -1.1338 6 6 4.3324 -0.4974 -2.1542 7 1 5.3512 -0.2085 -1.9418 8 6 3.8657 -0.4853 -3.4614 9 7 2.7653 -1.1366 -3.7734 10 14 4.7993 0.4555 -4.7777 11 1 4.2900 1.8488 -4.8456 12 1 6.2457 0.4731 -4.4418 13 1 4.6044 -0.2075 -6.0922 14 6 4.0402 -1.4511 0.1086 15 1 5.1252 -1.3466 0.1211 16 6 3.6634 -2.9312 0.1971 17 6 3.4312 -0.6859 1.2946 18 1 3.8028 0.3387 1.3006 19 6 3.8211 -1.3787 2.6019 20 8 2.0075 -0.6767 1.1653 21 1 -0.3633 -1.0277 0.0019 22 1 -0.3634 0.5154 0.8890 23 1 -0.3634 0.5122 -0.8909 24 1 1.8031 -0.1390 -2.1376 25 1 1.5759 -1.7074 -1.3221 26 1 2.4389 -1.1278 -4.6868 27 1 4.0794 -3.4639 -0.6580 28 1 4.0639 -3.3537 1.1187 29 1 2.5780 -3.0307 0.1940 30 1 3.4507 -2.4038 2.5944 31 1 4.9067 -1.3853 2.6998 32 1 3.3838 -0.8405 3.4428 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306952050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:51 Heat of formation + Delta-G solvation = -50.581955 kcal Electronic energy + Delta-G solvation = -13844.390020 eV Core-core repulsion = 11611.702653 eV Total energy + Delta-G solvation = -2232.687367 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.44601 -36.39745 -35.18364 -33.26890 -31.06313 -29.45928 -27.59785 -25.84550 -23.84022 -22.58361 -20.25679 -18.84023 -17.37554 -16.95104 -16.50180 -15.93517 -15.37804 -14.93553 -14.41734 -13.91915 -13.63945 -13.28792 -13.11519 -12.97193 -12.82663 -12.80933 -12.58346 -12.48178 -12.11313 -12.09267 -11.71310 -11.53451 -11.09895 -10.67266 -10.43416 -8.70041 -7.89010 -5.36155 1.44695 1.45899 1.54954 2.46969 2.88044 3.23504 3.53031 4.00509 4.21587 4.28607 4.31239 4.42654 4.53425 4.61654 4.76167 4.76833 4.96757 4.97970 5.06522 5.08478 5.18322 5.23711 5.25409 5.42168 5.48730 5.61021 5.65346 6.31782 6.47982 7.08443 7.78525 8.32907 9.15859 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039073 B = 0.013005 C = 0.011128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.430162 B = 2152.507484 C = 2515.473474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.067 3.933 3 H 0.042 0.958 4 C 0.160 3.840 5 N -0.610 5.610 6 C -0.265 4.265 7 H 0.068 0.932 8 C -0.050 4.050 9 N -0.935 5.935 10 Si 0.969 3.031 11 H -0.284 1.284 12 H -0.268 1.268 13 H -0.294 1.294 14 C 0.128 3.872 15 H 0.067 0.933 16 C -0.141 4.141 17 C 0.078 3.922 18 H 0.044 0.956 19 C -0.134 4.134 20 O -0.389 6.389 21 H 0.056 0.944 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.061 0.939 25 H -0.002 1.002 26 H 0.251 0.749 27 H 0.025 0.975 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 1.431 9.490 9.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.008 3.992 3 H 0.060 0.940 4 C 0.035 3.965 5 N -0.333 5.333 6 C -0.395 4.395 7 H 0.086 0.914 8 C -0.245 4.245 9 N -0.580 5.580 10 Si 0.797 3.203 11 H -0.211 1.211 12 H -0.193 1.193 13 H -0.221 1.221 14 C 0.021 3.979 15 H 0.085 0.915 16 C -0.200 4.200 17 C 0.019 3.981 18 H 0.062 0.938 19 C -0.191 4.191 20 O -0.309 6.309 21 H 0.075 0.925 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.016 0.984 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.514 1.330 9.459 9.566 hybrid contribution 0.474 0.344 -1.464 1.577 sum -0.040 1.674 7.994 8.168 Atomic orbital electron populations 1.21631 0.91558 1.02612 1.02846 1.22732 0.95867 0.94419 0.86157 0.94007 1.21200 0.83476 0.96348 0.95525 1.44516 1.02305 1.71769 1.14734 1.19543 0.95914 1.37598 0.86454 0.91386 1.25805 0.99327 1.00358 0.99047 1.70199 1.25759 1.43637 1.18452 0.85236 0.78693 0.78144 0.78195 1.21079 1.19302 1.22103 1.21541 0.97173 0.92449 0.86704 0.91483 1.22025 1.00351 0.97237 1.00427 1.22664 0.81124 0.98167 0.96144 0.93821 1.21787 1.02290 1.01046 0.93975 1.87758 1.21713 1.77904 1.43562 0.92490 0.90551 0.90690 0.92085 0.98358 0.94034 0.95583 0.90130 0.94703 0.91470 0.89412 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.57 71.98 0.69 -3.57 16 2 C 0.07 2.76 3.40 30.69 0.10 2.87 16 3 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.16 8.10 4.33 86.35 0.37 8.48 16 5 N -0.61 -31.75 2.74 -672.97 -1.84 -33.60 16 6 C -0.27 -14.90 9.65 84.03 0.81 -14.09 16 7 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 8 C -0.05 -2.83 4.95 84.86 0.42 -2.41 16 9 N -0.93 -55.99 11.14 21.65 0.24 -55.75 16 10 Si 0.97 45.26 29.59 68.60 2.03 47.29 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 14 C 0.13 5.46 2.96 45.11 0.13 5.59 16 15 H 0.07 2.79 7.96 -2.39 -0.02 2.77 16 16 C -0.14 -5.67 8.64 71.98 0.62 -5.04 16 17 C 0.08 2.85 3.12 30.84 0.10 2.95 16 18 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 19 C -0.13 -3.57 9.03 71.98 0.65 -2.92 16 20 O -0.39 -15.46 9.65 -148.98 -1.44 -16.90 16 21 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.06 3.42 6.14 -2.39 -0.01 3.40 16 25 H 0.00 -0.09 7.65 -2.39 -0.02 -0.11 16 26 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 2.54 6.44 -2.38 -0.02 2.53 16 29 H 0.03 1.49 7.21 -2.39 -0.02 1.47 16 30 H 0.07 1.77 6.37 -2.39 -0.02 1.76 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -64.14 253.19 3.96 -60.18 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.07 Total: 6.92 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 3.90 Total: -8.15 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -1.60 Total: -89.35 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -1.44 Total: -16.90 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -64.14 3.96 -60.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306952050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.596 kcal (2) G-P(sol) polarization free energy of solvation -64.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds