Wall clock time and date at job start Mon Mar 30 2020 02:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.55842 * 2 1 4 4 C 1.53303 * 109.50894 * 239.87853 * 2 1 3 5 5 N 1.47148 * 108.38364 * 187.77640 * 4 2 1 6 6 C 1.36933 * 120.98214 * 230.55707 * 5 4 2 7 7 H 1.07997 * 120.00167 * 153.29861 * 6 5 4 8 8 C 1.38810 * 120.00038 * 333.29977 * 6 5 4 9 9 N 1.31624 * 119.99898 * 343.54802 * 8 6 5 10 10 Si 1.86803 * 120.00373 * 163.55530 * 8 6 5 11 11 H 1.48497 * 109.47108 * 89.99885 * 10 8 6 12 12 H 1.48495 * 109.47138 * 210.00028 * 10 8 6 13 13 H 1.48501 * 109.46603 * 329.99547 * 10 8 6 14 14 C 1.47156 * 118.03614 * 50.53194 * 5 4 2 15 15 H 1.09004 * 109.71266 * 189.72642 * 14 5 4 16 16 C 1.53003 * 109.68334 * 69.19089 * 14 5 4 17 17 C 1.53289 * 108.38499 * 309.46519 * 14 5 4 18 18 H 1.09008 * 109.51001 * 172.22546 * 17 14 5 19 19 C 1.52996 * 109.51728 * 292.37767 * 17 14 5 20 20 O 1.42959 * 109.51223 * 120.13334 * 2 1 3 21 21 H 1.08994 * 109.47267 * 180.12217 * 1 2 3 22 22 H 1.09000 * 109.46533 * 300.12153 * 1 2 3 23 23 H 1.08998 * 109.47268 * 60.11946 * 1 2 3 24 24 H 1.08996 * 109.68384 * 68.04824 * 4 2 1 25 25 H 1.09007 * 109.70875 * 307.51681 * 4 2 1 26 26 H 0.96999 * 119.99986 * 179.97438 * 9 8 6 27 27 H 1.09005 * 109.46932 * 301.07422 * 16 14 5 28 28 H 1.09006 * 109.46808 * 61.06827 * 16 14 5 29 29 H 1.08995 * 109.47584 * 181.06864 * 16 14 5 30 30 H 1.09004 * 109.46842 * 59.99560 * 19 17 14 31 31 H 1.08992 * 109.47485 * 180.02562 * 19 17 14 32 32 H 1.09004 * 109.46690 * 300.00552 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0420 -0.7252 -1.2499 5 7 3.5011 -0.8762 -1.1338 6 6 4.3324 -0.4974 -2.1539 7 1 5.3488 -0.2013 -1.9405 8 6 3.8686 -0.4939 -3.4622 9 7 2.7680 -1.1460 -3.7720 10 14 4.8065 0.4360 -4.7832 11 1 5.8107 -0.4646 -5.4042 12 1 3.8579 0.9109 -5.8223 13 1 5.4963 1.6010 -4.1732 14 6 4.0406 -1.4459 0.1111 15 1 5.1252 -1.3383 0.1250 16 6 3.6686 -2.9272 0.2037 17 6 3.4313 -0.6857 1.2946 18 1 3.7092 -1.1790 2.2261 19 6 3.9531 0.7525 1.3014 20 8 2.0075 -0.6765 1.1654 21 1 -0.3633 -1.0276 0.0022 22 1 -0.3632 0.5157 0.8889 23 1 -0.3634 0.5120 -0.8910 24 1 1.8030 -0.1398 -2.1377 25 1 1.5757 -1.7078 -1.3217 26 1 2.4438 -1.1433 -4.6862 27 1 2.5838 -3.0315 0.1803 28 1 4.1034 -3.4643 -0.6393 29 1 4.0534 -3.3410 1.1357 30 1 3.6726 1.2452 0.3703 31 1 3.5198 1.2923 2.1433 32 1 5.0390 0.7446 1.3953 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306952053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:54 Heat of formation + Delta-G solvation = -30.863683 kcal Electronic energy + Delta-G solvation = -13975.180908 eV Core-core repulsion = 11743.348589 eV Total energy + Delta-G solvation = -2231.832318 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.92222 -34.51514 -33.03898 -31.29892 -29.19598 -28.60828 -25.68745 -23.55137 -22.22285 -21.18744 -18.17006 -16.92061 -15.71552 -15.09543 -14.45847 -13.97788 -13.79313 -13.29605 -12.69852 -12.46955 -11.86128 -11.69163 -11.55766 -11.28112 -11.13836 -11.01276 -10.93895 -10.67183 -10.28246 -10.19219 -10.04167 -9.79251 -9.26450 -8.77502 -8.44423 -6.63570 -5.77728 -3.20568 3.36309 3.43449 3.45376 4.44762 4.54513 5.33330 5.38313 5.64741 5.69208 5.82272 5.87352 6.07251 6.08651 6.14306 6.24993 6.36210 6.47495 6.54236 6.61681 6.68596 6.71625 6.88758 6.99670 7.10843 7.27402 7.63804 7.77568 8.11169 8.41891 9.19232 9.82644 10.41096 11.29573 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.036895 B = 0.013672 C = 0.012463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.725643 B = 2047.443769 C = 2246.165434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.056 3.944 3 H 0.051 0.949 4 C 0.151 3.849 5 N -0.586 5.586 6 C -0.249 4.249 7 H 0.066 0.934 8 C 0.002 3.998 9 N -0.903 5.903 10 Si 0.901 3.099 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.137 3.863 15 H 0.065 0.935 16 C -0.154 4.154 17 C 0.079 3.921 18 H 0.085 0.915 19 C -0.173 4.173 20 O -0.386 6.386 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.026 0.974 26 H 0.253 0.747 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 1.952 7.312 7.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.003 4.003 3 H 0.069 0.931 4 C 0.025 3.975 5 N -0.309 5.309 6 C -0.379 4.379 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.547 5.547 10 Si 0.731 3.269 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.030 3.970 15 H 0.083 0.917 16 C -0.213 4.213 17 C 0.020 3.980 18 H 0.103 0.897 19 C -0.231 4.231 20 O -0.305 6.305 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.108 0.892 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.046 1.865 7.248 7.557 hybrid contribution 0.651 0.462 -1.008 1.286 sum -0.395 2.327 6.240 6.672 Atomic orbital electron populations 1.21663 0.94564 1.02105 1.01115 1.22874 0.93479 0.95993 0.87963 0.93108 1.21398 0.83623 0.97931 0.94541 1.44127 1.01973 1.71170 1.13583 1.19161 0.95654 1.37639 0.85406 0.91618 1.25034 0.98200 0.99410 0.97044 1.70034 1.24082 1.42365 1.18237 0.86313 0.79029 0.79880 0.81662 1.21435 1.21576 1.20522 1.21195 0.96934 0.91319 0.87584 0.91668 1.22126 1.01681 0.98176 0.99325 1.22545 0.81674 0.95388 0.98416 0.89675 1.22266 1.00695 0.97878 1.02242 1.87805 1.20669 1.77756 1.44301 0.92386 0.93175 0.91554 0.89198 0.95625 0.93652 0.92946 0.93026 0.94605 0.90903 0.93560 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.57 37.16 0.36 -1.99 16 2 C 0.06 1.14 3.01 -26.57 -0.08 1.06 16 3 H 0.05 1.05 6.25 -51.93 -0.32 0.73 16 4 C 0.15 3.67 4.33 -3.53 -0.02 3.65 16 5 N -0.59 -14.68 2.26 -164.30 -0.37 -15.05 16 6 C -0.25 -6.79 9.65 -15.06 -0.15 -6.94 16 7 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 8 C 0.00 0.04 4.95 -17.43 -0.09 -0.04 16 9 N -0.90 -26.11 11.15 55.49 0.62 -25.50 16 10 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.14 2.94 2.71 -67.42 -0.18 2.76 16 15 H 0.07 1.37 7.96 -51.93 -0.41 0.96 16 16 C -0.15 -3.14 9.25 37.16 0.34 -2.79 16 17 C 0.08 1.49 3.30 -26.58 -0.09 1.41 16 18 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 19 C -0.17 -3.05 8.81 37.16 0.33 -2.72 16 20 O -0.39 -7.89 9.87 -35.23 -0.35 -8.24 16 21 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 25 H 0.03 0.67 7.64 -51.93 -0.40 0.28 16 26 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.05 1.13 7.20 -51.93 -0.37 0.76 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.46 6.11 -51.93 -0.32 1.14 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 252.39 15.07 3.80 3.80 Total: -1.00 -29.04 252.39 -5.97 -35.02 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.08 Total: -1.02 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 0.43 Total: -5.61 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.25 Total: -40.55 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.35 Total: -8.24 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.04 -5.97 -35.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306952053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.152 kcal (2) G-P(sol) polarization free energy of solvation -29.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds