Wall clock time and date at job start Mon Mar 30 2020 02:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.55472 * 2 1 4 4 C 1.52870 * 109.58383 * 240.00335 * 2 1 3 5 5 N 1.47157 * 108.60775 * 187.92565 * 4 2 1 6 6 C 1.36931 * 120.98211 * 230.50610 * 5 4 2 7 7 H 1.08000 * 120.00282 * 151.44265 * 6 5 4 8 8 C 1.38821 * 119.99975 * 331.70832 * 6 5 4 9 9 N 1.31621 * 119.99592 * 344.93579 * 8 6 5 10 10 Si 1.86797 * 119.99978 * 164.93135 * 8 6 5 11 11 H 1.48497 * 109.47273 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46824 * 120.00358 * 10 8 6 13 13 H 1.48491 * 109.47290 * 240.00132 * 10 8 6 14 14 C 1.47146 * 118.03665 * 50.22458 * 5 4 2 15 15 H 1.09005 * 109.68578 * 69.44142 * 14 5 4 16 16 C 1.53001 * 109.68562 * 189.99890 * 14 5 4 17 17 C 1.53298 * 108.38628 * 309.71984 * 14 5 4 18 18 H 1.09002 * 109.51201 * 292.32771 * 17 14 5 19 19 C 1.53000 * 109.51637 * 172.22206 * 17 14 5 20 20 O 1.42960 * 109.22254 * 52.29844 * 17 14 5 21 21 H 1.08998 * 109.47699 * 299.87817 * 1 2 3 22 22 H 1.08998 * 109.46842 * 59.88014 * 1 2 3 23 23 H 1.09000 * 109.47240 * 179.87322 * 1 2 3 24 24 H 1.09000 * 109.61968 * 68.10616 * 4 2 1 25 25 H 1.09001 * 109.52491 * 307.68596 * 4 2 1 26 26 H 0.97002 * 119.99496 * 180.02562 * 9 8 6 27 27 H 1.08995 * 109.47130 * 59.99762 * 16 14 5 28 28 H 1.08999 * 109.47046 * 180.02562 * 16 14 5 29 29 H 1.09004 * 109.46661 * 299.99622 * 16 14 5 30 30 H 1.09004 * 109.46870 * 60.00224 * 19 17 14 31 31 H 1.09002 * 109.47443 * 179.97438 * 19 17 14 32 32 H 1.08999 * 109.47124 * 300.00344 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0424 -0.7201 -1.2473 5 7 3.5012 -0.8763 -1.1334 6 6 4.3326 -0.4975 -2.1534 7 1 5.3409 -0.1767 -1.9374 8 6 3.8775 -0.5206 -3.4647 9 7 2.7754 -1.1735 -3.7673 10 14 4.8291 0.3749 -4.7995 11 1 6.0234 1.0261 -4.2039 12 1 5.2609 -0.5968 -5.8361 13 1 3.9598 1.4067 -5.4197 14 6 4.0407 -1.4458 0.1116 15 1 3.7757 -2.5010 0.1777 16 6 5.5630 -1.2939 0.1306 17 6 3.4312 -0.6854 1.2950 18 1 3.8036 0.3391 1.3001 19 6 3.8210 -1.3775 2.6026 20 8 2.0075 -0.6762 1.1656 21 1 -0.3634 0.5119 0.8910 22 1 -0.3633 0.5157 -0.8889 23 1 -0.3634 -1.0276 -0.0023 24 1 1.8044 -0.1315 -2.1334 25 1 1.5728 -1.7010 -1.3205 26 1 2.4576 -1.1899 -4.6836 27 1 5.8234 -0.2370 0.0741 28 1 5.9588 -1.7171 1.0538 29 1 5.9912 -1.8198 -0.7227 30 1 4.9068 -1.3880 2.6984 31 1 3.3877 -0.8360 3.4436 32 1 3.4468 -2.4012 2.5975 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306952056.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:55 Heat of formation + Delta-G solvation = -51.614966 kcal Electronic energy + Delta-G solvation = -13791.832891 eV Core-core repulsion = 11559.100729 eV Total energy + Delta-G solvation = -2232.732162 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.41377 -36.58181 -35.28463 -33.25305 -31.04398 -29.66571 -27.61862 -25.54116 -23.72769 -22.29033 -21.15377 -18.44633 -17.56021 -17.15381 -16.05494 -15.87980 -15.52502 -14.99505 -14.67750 -13.97393 -13.59693 -13.21088 -13.16178 -12.93917 -12.87009 -12.83925 -12.49328 -12.32246 -12.18026 -12.03686 -11.74335 -11.63283 -11.18677 -10.64463 -10.44499 -8.67793 -7.87866 -5.36449 1.44300 1.45725 1.56402 2.47391 2.85461 3.25881 3.49960 3.95002 4.22781 4.26863 4.31286 4.40254 4.54043 4.62454 4.66988 4.75723 4.88606 4.97950 5.05405 5.08994 5.19019 5.19360 5.28401 5.44291 5.47412 5.58998 5.66069 6.33148 6.45253 7.09213 7.79030 8.34660 9.18685 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.036584 B = 0.013789 C = 0.010737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.169779 B = 2030.103818 C = 2607.108159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.068 3.932 3 H 0.044 0.956 4 C 0.158 3.842 5 N -0.613 5.613 6 C -0.256 4.256 7 H 0.078 0.922 8 C -0.055 4.055 9 N -0.940 5.940 10 Si 0.968 3.032 11 H -0.264 1.264 12 H -0.293 1.293 13 H -0.290 1.290 14 C 0.130 3.870 15 H 0.012 0.988 16 C -0.128 4.128 17 C 0.076 3.924 18 H 0.048 0.952 19 C -0.132 4.132 20 O -0.396 6.396 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.055 0.945 24 H 0.063 0.937 25 H -0.006 1.006 26 H 0.249 0.751 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 2.427 9.466 9.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.009 3.991 3 H 0.062 0.938 4 C 0.032 3.968 5 N -0.338 5.338 6 C -0.386 4.386 7 H 0.096 0.904 8 C -0.250 4.250 9 N -0.586 5.586 10 Si 0.796 3.204 11 H -0.188 1.188 12 H -0.220 1.220 13 H -0.217 1.217 14 C 0.024 3.976 15 H 0.030 0.970 16 C -0.185 4.185 17 C 0.017 3.983 18 H 0.066 0.934 19 C -0.189 4.189 20 O -0.316 6.316 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.012 0.988 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.702 2.320 9.449 9.755 hybrid contribution 0.314 0.225 -1.475 1.525 sum 1.016 2.545 7.974 8.432 Atomic orbital electron populations 1.21634 0.91443 1.02614 1.02947 1.22661 0.95973 0.94480 0.85987 0.93782 1.21147 0.83664 0.96294 0.95694 1.44534 1.02244 1.72431 1.14582 1.19593 0.97081 1.36204 0.85697 0.90408 1.25898 0.99286 1.00357 0.99444 1.70202 1.25837 1.44356 1.18214 0.85188 0.78355 0.77808 0.79027 1.18790 1.22013 1.21671 1.21395 0.94996 0.94319 0.86846 0.97006 1.21736 0.93480 1.01569 1.01702 1.22677 0.80811 0.98592 0.96239 0.93380 1.21757 1.02572 1.00507 0.94094 1.87759 1.22044 1.78097 1.43749 0.90482 0.90531 0.92561 0.91899 0.98791 0.94161 0.92924 0.89683 0.93771 0.88911 0.91022 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 9.57 71.98 0.69 -3.61 16 2 C 0.07 2.83 3.39 30.55 0.10 2.93 16 3 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 4 C 0.16 8.11 4.68 86.21 0.40 8.51 16 5 N -0.61 -32.18 3.05 -674.53 -2.06 -34.23 16 6 C -0.26 -14.17 8.69 84.04 0.73 -13.44 16 7 H 0.08 4.12 6.23 -2.91 -0.02 4.10 16 8 C -0.06 -3.11 4.97 84.86 0.42 -2.69 16 9 N -0.94 -56.68 11.18 21.65 0.24 -56.44 16 10 Si 0.97 45.16 29.58 68.60 2.03 47.19 16 11 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 13 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 14 C 0.13 5.65 3.13 44.97 0.14 5.79 16 15 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 16 C -0.13 -4.67 7.73 71.98 0.56 -4.11 16 17 C 0.08 2.81 2.85 30.69 0.09 2.90 16 18 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 19 C -0.13 -3.61 9.38 71.98 0.67 -2.93 16 20 O -0.40 -16.21 10.03 -148.98 -1.49 -17.71 16 21 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 22 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.06 3.54 6.24 -2.39 -0.01 3.52 16 25 H -0.01 -0.34 8.13 -2.39 -0.02 -0.36 16 26 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.05 1.92 7.62 -2.39 -0.02 1.90 16 28 H 0.08 2.38 6.75 -2.39 -0.02 2.36 16 29 H 0.04 1.76 7.53 -2.38 -0.02 1.75 16 30 H 0.09 2.07 6.73 -2.38 -0.02 2.05 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -65.14 252.21 3.60 -61.54 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.07 Total: 6.30 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 3.81 Total: -6.64 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -1.81 Total: -90.67 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -1.49 Total: -17.71 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -65.14 3.60 -61.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306952056.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.920 kcal (2) G-P(sol) polarization free energy of solvation -65.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds