Wall clock time and date at job start Mon Mar 30 2020 02:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47267 * 2 1 4 4 N 1.46508 * 109.46645 * 239.99712 * 2 1 3 5 5 C 1.36937 * 119.99640 * 85.00765 * 4 2 1 6 6 H 1.08000 * 120.00243 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99576 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99871 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99641 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46991 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47004 * 119.99695 * 9 7 5 12 12 H 1.48500 * 109.46806 * 239.99458 * 9 7 5 13 13 C 1.53001 * 109.47299 * 120.00152 * 2 1 3 14 14 H 1.08992 * 109.48192 * 174.97268 * 13 2 1 15 15 C 1.53096 * 109.48000 * 294.99751 * 13 2 1 16 16 C 1.53178 * 109.16278 * 177.60185 * 15 13 2 17 17 C 1.53178 * 109.03511 * 303.01594 * 16 15 13 18 18 C 1.53093 * 109.16255 * 56.98447 * 17 16 15 19 19 O 1.42904 * 109.42351 * 302.38111 * 18 17 16 20 20 H 1.08996 * 109.47312 * 59.99542 * 1 2 3 21 21 H 1.08993 * 109.47884 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.46665 * 300.00399 * 1 2 3 23 23 H 0.96998 * 119.99861 * 265.00030 * 4 2 1 24 24 H 0.96997 * 119.99500 * 180.02562 * 8 7 5 25 25 H 1.08999 * 109.52155 * 57.69394 * 15 13 2 26 26 H 1.08996 * 109.57060 * 297.53652 * 15 13 2 27 27 H 1.09002 * 109.54068 * 183.15004 * 16 15 13 28 28 H 1.08996 * 109.54450 * 62.88578 * 16 15 13 29 29 H 1.09000 * 109.52619 * 297.07706 * 17 16 15 30 30 H 1.08998 * 109.51869 * 176.88944 * 17 16 15 31 31 H 1.09002 * 109.48198 * 62.37219 * 18 17 16 32 32 H 1.08999 * 109.48029 * 182.39833 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1962 5 6 2.1490 -0.0076 -2.3758 6 1 1.8919 1.0403 -2.4244 7 6 2.6111 -0.6622 -3.5093 8 7 2.9240 -1.9393 -3.4502 9 14 2.7890 0.2696 -5.1186 10 1 2.3743 1.6818 -4.9213 11 1 4.2056 0.2265 -5.5616 12 1 1.9278 -0.3590 -6.1522 13 6 2.0400 -0.7213 1.2492 14 1 3.1262 -0.8000 1.2055 15 6 1.6352 0.0692 2.4962 16 6 2.0969 -0.6894 3.7443 17 6 1.4917 -2.0964 3.7261 18 6 1.9020 -2.8033 2.4317 19 8 1.4693 -2.0303 1.3103 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0275 0.0005 22 1 -0.3633 0.5140 0.8900 23 1 2.2488 -1.6319 -1.1526 24 1 3.2472 -2.3965 -4.2422 25 1 0.5514 0.1832 2.5193 26 1 2.1045 1.0527 2.4734 27 1 1.7629 -0.1603 4.6369 28 1 3.1845 -0.7602 3.7464 29 1 0.4050 -2.0262 3.7741 30 1 1.8592 -2.6620 4.5823 31 1 2.9865 -2.9093 2.4034 32 1 1.4393 -3.7894 2.3936 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306998383.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:40 Heat of formation + Delta-G solvation = -51.884415 kcal Electronic energy + Delta-G solvation = -13319.501770 eV Core-core repulsion = 11086.757924 eV Total energy + Delta-G solvation = -2232.743846 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.15583 -35.19020 -33.31593 -32.27915 -29.92998 -27.85599 -24.97109 -24.01869 -22.81663 -20.33576 -19.42700 -17.15487 -15.74334 -15.50760 -14.83132 -14.38059 -14.24148 -13.75601 -13.20326 -12.58400 -12.42732 -12.23779 -11.97451 -11.40312 -11.06386 -10.92543 -10.84546 -10.69891 -10.45523 -10.16754 -10.06024 -9.67422 -9.56918 -8.95784 -8.82696 -6.84828 -5.67306 -2.95288 3.47999 3.53176 3.55722 4.25884 4.64568 4.95818 4.97639 5.05512 5.23953 5.51269 5.61507 5.65253 5.77013 5.84488 5.92861 5.99720 6.02796 6.12803 6.18056 6.23176 6.40376 6.43031 6.62229 6.80424 6.94865 7.28460 7.75476 7.79016 8.51443 9.62811 10.23202 10.59843 11.55433 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.063392 B = 0.008462 C = 0.007988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.587746 B = 3307.970332 C = 3504.298124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.054 0.946 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.016 4.016 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.087 3.913 14 H 0.056 0.944 15 C -0.150 4.150 16 C -0.121 4.121 17 C -0.155 4.155 18 C 0.059 3.941 19 O -0.364 6.364 20 H 0.048 0.952 21 H 0.055 0.945 22 H 0.034 0.966 23 H 0.389 0.611 24 H 0.253 0.747 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.164 1.600 13.839 14.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.072 0.928 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.212 4.212 8 N -0.580 5.580 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C 0.028 3.972 14 H 0.074 0.926 15 C -0.188 4.188 16 C -0.159 4.159 17 C -0.192 4.192 18 C -0.019 4.019 19 O -0.282 6.282 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.223 0.777 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.278 1.662 13.549 13.840 hybrid contribution 0.349 0.210 -0.656 0.772 sum -1.929 1.872 12.893 13.170 Atomic orbital electron populations 1.22372 0.98939 1.01475 0.99244 1.20257 0.92667 0.94459 0.85397 0.92771 1.42416 1.77814 1.11031 1.05064 1.19315 1.36115 0.93818 0.87491 0.91218 1.24741 1.02485 0.95970 0.97974 1.69695 1.51081 1.08630 1.28583 0.86141 0.77224 0.78764 0.84236 1.20619 1.21978 1.21952 1.22548 0.96840 0.82902 0.94906 0.92623 1.22255 1.02374 0.99269 0.94949 1.21580 1.00404 0.95809 0.98071 1.22187 1.01606 0.96818 0.98624 1.22489 0.98751 0.94796 0.85823 1.88050 1.69188 1.26153 1.44836 0.93287 0.92589 0.94712 0.77709 0.93689 0.90819 0.91189 0.92052 0.92105 0.91328 0.91598 0.93670 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.05 37.16 0.34 -2.83 16 2 C 0.18 3.85 2.76 -67.93 -0.19 3.66 16 3 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 4 N -0.72 -19.13 5.10 -53.42 -0.27 -19.41 16 5 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 16 6 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 8 N -0.93 -29.07 13.06 55.49 0.72 -28.35 16 9 Si 0.90 22.91 29.55 -169.99 -5.02 17.89 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 C 0.09 1.56 2.47 -26.68 -0.07 1.50 16 14 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 15 C -0.15 -2.12 5.22 -26.59 -0.14 -2.26 16 16 C -0.12 -1.45 6.03 -26.55 -0.16 -1.61 16 17 C -0.15 -1.84 6.14 -26.59 -0.16 -2.00 16 18 C 0.06 0.85 6.84 37.21 0.25 1.10 16 19 O -0.36 -6.81 9.26 -35.23 -0.33 -7.14 16 20 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 21 H 0.05 1.17 7.56 -51.93 -0.39 0.78 16 22 H 0.03 0.57 6.52 -51.92 -0.34 0.23 16 23 H 0.39 11.13 7.58 -40.82 -0.31 10.82 16 24 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.07 1.04 6.47 -51.93 -0.34 0.71 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 257.86 15.07 3.89 3.89 Total: -1.00 -31.24 257.86 -6.53 -37.77 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.15 Total: 5.29 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -0.37 Total: -9.93 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.45 Total: -47.76 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.33 Total: -7.14 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.24 -6.53 -37.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306998383.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.118 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds