Wall clock time and date at job start Mon Mar 30 2020 02:45:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08999 * 109.47267 * 2 1
4 4 N 1.46508 * 109.46645 * 239.99712 * 2 1 3
5 5 C 1.36937 * 119.99640 * 85.00765 * 4 2 1
6 6 H 1.08000 * 120.00243 * 359.97438 * 5 4 2
7 7 C 1.38816 * 119.99576 * 180.02562 * 5 4 2
8 8 N 1.31618 * 119.99871 * 359.97438 * 7 5 4
9 9 Si 1.86803 * 119.99641 * 179.97438 * 7 5 4
10 10 H 1.48503 * 109.46991 * 359.97438 * 9 7 5
11 11 H 1.48494 * 109.47004 * 119.99695 * 9 7 5
12 12 H 1.48500 * 109.46806 * 239.99458 * 9 7 5
13 13 C 1.53001 * 109.47299 * 120.00152 * 2 1 3
14 14 H 1.08992 * 109.48192 * 174.97268 * 13 2 1
15 15 C 1.53096 * 109.48000 * 294.99751 * 13 2 1
16 16 C 1.53178 * 109.16278 * 177.60185 * 15 13 2
17 17 C 1.53178 * 109.03511 * 303.01594 * 16 15 13
18 18 C 1.53093 * 109.16255 * 56.98447 * 17 16 15
19 19 O 1.42904 * 109.42351 * 302.38111 * 18 17 16
20 20 H 1.08996 * 109.47312 * 59.99542 * 1 2 3
21 21 H 1.08993 * 109.47884 * 180.02562 * 1 2 3
22 22 H 1.09009 * 109.46665 * 300.00399 * 1 2 3
23 23 H 0.96998 * 119.99861 * 265.00030 * 4 2 1
24 24 H 0.96997 * 119.99500 * 180.02562 * 8 7 5
25 25 H 1.08999 * 109.52155 * 57.69394 * 15 13 2
26 26 H 1.08996 * 109.57060 * 297.53652 * 15 13 2
27 27 H 1.09002 * 109.54068 * 183.15004 * 16 15 13
28 28 H 1.08996 * 109.54450 * 62.88578 * 16 15 13
29 29 H 1.09000 * 109.52619 * 297.07706 * 17 16 15
30 30 H 1.08998 * 109.51869 * 176.88944 * 17 16 15
31 31 H 1.09002 * 109.48198 * 62.37219 * 18 17 16
32 32 H 1.08999 * 109.48029 * 182.39833 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0182 -0.6907 -1.1962
5 6 2.1490 -0.0076 -2.3758
6 1 1.8919 1.0403 -2.4244
7 6 2.6111 -0.6622 -3.5093
8 7 2.9240 -1.9393 -3.4502
9 14 2.7890 0.2696 -5.1186
10 1 2.3743 1.6818 -4.9213
11 1 4.2056 0.2265 -5.5616
12 1 1.9278 -0.3590 -6.1522
13 6 2.0400 -0.7213 1.2492
14 1 3.1262 -0.8000 1.2055
15 6 1.6352 0.0692 2.4962
16 6 2.0969 -0.6894 3.7443
17 6 1.4917 -2.0964 3.7261
18 6 1.9020 -2.8033 2.4317
19 8 1.4693 -2.0303 1.3103
20 1 -0.3634 0.5139 -0.8899
21 1 -0.3634 -1.0275 0.0005
22 1 -0.3633 0.5140 0.8900
23 1 2.2488 -1.6319 -1.1526
24 1 3.2472 -2.3965 -4.2422
25 1 0.5514 0.1832 2.5193
26 1 2.1045 1.0527 2.4734
27 1 1.7629 -0.1603 4.6369
28 1 3.1845 -0.7602 3.7464
29 1 0.4050 -2.0262 3.7741
30 1 1.8592 -2.6620 4.5823
31 1 2.9865 -2.9093 2.4034
32 1 1.4393 -3.7894 2.3936
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306998383.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:40
Heat of formation + Delta-G solvation = -51.884415 kcal
Electronic energy + Delta-G solvation = -13319.501770 eV
Core-core repulsion = 11086.757924 eV
Total energy + Delta-G solvation = -2232.743846 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.15583 -35.19020 -33.31593 -32.27915 -29.92998 -27.85599 -24.97109 -24.01869
-22.81663 -20.33576 -19.42700 -17.15487 -15.74334 -15.50760 -14.83132 -14.38059
-14.24148 -13.75601 -13.20326 -12.58400 -12.42732 -12.23779 -11.97451 -11.40312
-11.06386 -10.92543 -10.84546 -10.69891 -10.45523 -10.16754 -10.06024 -9.67422
-9.56918 -8.95784 -8.82696 -6.84828 -5.67306 -2.95288 3.47999 3.53176
3.55722 4.25884 4.64568 4.95818 4.97639 5.05512 5.23953 5.51269
5.61507 5.65253 5.77013 5.84488 5.92861 5.99720 6.02796 6.12803
6.18056 6.23176 6.40376 6.43031 6.62229 6.80424 6.94865 7.28460
7.75476 7.79016 8.51443 9.62811 10.23202 10.59843 11.55433
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.063392 B = 0.008462 C = 0.007988
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 441.587746 B = 3307.970332 C = 3504.298124
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.182 3.818
3 H 0.054 0.946
4 N -0.722 5.722
5 C -0.236 4.236
6 H 0.070 0.930
7 C -0.016 4.016
8 N -0.931 5.931
9 Si 0.905 3.095
10 H -0.281 1.281
11 H -0.292 1.292
12 H -0.292 1.292
13 C 0.087 3.913
14 H 0.056 0.944
15 C -0.150 4.150
16 C -0.121 4.121
17 C -0.155 4.155
18 C 0.059 3.941
19 O -0.364 6.364
20 H 0.048 0.952
21 H 0.055 0.945
22 H 0.034 0.966
23 H 0.389 0.611
24 H 0.253 0.747
25 H 0.073 0.927
26 H 0.069 0.931
27 H 0.061 0.939
28 H 0.060 0.940
29 H 0.068 0.932
30 H 0.065 0.935
31 H 0.045 0.955
32 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.164 1.600 13.839 14.098
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.072 3.928
3 H 0.072 0.928
4 N -0.363 5.363
5 C -0.367 4.367
6 H 0.088 0.912
7 C -0.212 4.212
8 N -0.580 5.580
9 Si 0.736 3.264
10 H -0.206 1.206
11 H -0.220 1.220
12 H -0.220 1.220
13 C 0.028 3.972
14 H 0.074 0.926
15 C -0.188 4.188
16 C -0.159 4.159
17 C -0.192 4.192
18 C -0.019 4.019
19 O -0.282 6.282
20 H 0.067 0.933
21 H 0.074 0.926
22 H 0.053 0.947
23 H 0.223 0.777
24 H 0.063 0.937
25 H 0.092 0.908
26 H 0.088 0.912
27 H 0.079 0.921
28 H 0.079 0.921
29 H 0.087 0.913
30 H 0.084 0.916
31 H 0.063 0.937
32 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -2.278 1.662 13.549 13.840
hybrid contribution 0.349 0.210 -0.656 0.772
sum -1.929 1.872 12.893 13.170
Atomic orbital electron populations
1.22372 0.98939 1.01475 0.99244 1.20257 0.92667 0.94459 0.85397
0.92771 1.42416 1.77814 1.11031 1.05064 1.19315 1.36115 0.93818
0.87491 0.91218 1.24741 1.02485 0.95970 0.97974 1.69695 1.51081
1.08630 1.28583 0.86141 0.77224 0.78764 0.84236 1.20619 1.21978
1.21952 1.22548 0.96840 0.82902 0.94906 0.92623 1.22255 1.02374
0.99269 0.94949 1.21580 1.00404 0.95809 0.98071 1.22187 1.01606
0.96818 0.98624 1.22489 0.98751 0.94796 0.85823 1.88050 1.69188
1.26153 1.44836 0.93287 0.92589 0.94712 0.77709 0.93689 0.90819
0.91189 0.92052 0.92105 0.91328 0.91598 0.93670 0.89464
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.16 9.05 37.16 0.34 -2.83 16
2 C 0.18 3.85 2.76 -67.93 -0.19 3.66 16
3 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16
4 N -0.72 -19.13 5.10 -53.42 -0.27 -19.41 16
5 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 16
6 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16
7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16
8 N -0.93 -29.07 13.06 55.49 0.72 -28.35 16
9 Si 0.90 22.91 29.55 -169.99 -5.02 17.89 16
10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16
12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16
13 C 0.09 1.56 2.47 -26.68 -0.07 1.50 16
14 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16
15 C -0.15 -2.12 5.22 -26.59 -0.14 -2.26 16
16 C -0.12 -1.45 6.03 -26.55 -0.16 -1.61 16
17 C -0.15 -1.84 6.14 -26.59 -0.16 -2.00 16
18 C 0.06 0.85 6.84 37.21 0.25 1.10 16
19 O -0.36 -6.81 9.26 -35.23 -0.33 -7.14 16
20 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
21 H 0.05 1.17 7.56 -51.93 -0.39 0.78 16
22 H 0.03 0.57 6.52 -51.92 -0.34 0.23 16
23 H 0.39 11.13 7.58 -40.82 -0.31 10.82 16
24 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16
25 H 0.07 1.04 6.47 -51.93 -0.34 0.71 16
26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
32 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16
LS Contribution 257.86 15.07 3.89 3.89
Total: -1.00 -31.24 257.86 -6.53 -37.77
By element:
Atomic # 1 Polarization: 10.43 SS G_CDS: -5.15 Total: 5.29 kcal
Atomic # 6 Polarization: -9.56 SS G_CDS: -0.37 Total: -9.93 kcal
Atomic # 7 Polarization: -48.21 SS G_CDS: 0.45 Total: -47.76 kcal
Atomic # 8 Polarization: -6.81 SS G_CDS: -0.33 Total: -7.14 kcal
Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal
Total LS contribution 3.89 Total: 3.89 kcal
Total: -31.24 -6.53 -37.77 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306998383.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.118 kcal
(2) G-P(sol) polarization free energy of solvation -31.238 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.356 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.884 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds