Wall clock time and date at job start Mon Mar 30 2020 02:45:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08999 * 109.47267 * 2 1
4 4 N 1.46508 * 109.46645 * 239.99712 * 2 1 3
5 5 C 1.36937 * 119.99640 * 85.00765 * 4 2 1
6 6 H 1.08000 * 120.00243 * 359.97438 * 5 4 2
7 7 C 1.38816 * 119.99576 * 180.02562 * 5 4 2
8 8 N 1.31618 * 119.99871 * 359.97438 * 7 5 4
9 9 Si 1.86803 * 119.99641 * 179.97438 * 7 5 4
10 10 H 1.48503 * 109.46991 * 359.97438 * 9 7 5
11 11 H 1.48494 * 109.47004 * 119.99695 * 9 7 5
12 12 H 1.48500 * 109.46806 * 239.99458 * 9 7 5
13 13 C 1.53001 * 109.47299 * 120.00152 * 2 1 3
14 14 H 1.08992 * 109.48192 * 174.97268 * 13 2 1
15 15 C 1.53096 * 109.48000 * 294.99751 * 13 2 1
16 16 C 1.53178 * 109.16278 * 177.60185 * 15 13 2
17 17 C 1.53178 * 109.03511 * 303.01594 * 16 15 13
18 18 C 1.53093 * 109.16255 * 56.98447 * 17 16 15
19 19 O 1.42904 * 109.42351 * 302.38111 * 18 17 16
20 20 H 1.08996 * 109.47312 * 59.99542 * 1 2 3
21 21 H 1.08993 * 109.47884 * 180.02562 * 1 2 3
22 22 H 1.09009 * 109.46665 * 300.00399 * 1 2 3
23 23 H 0.96998 * 119.99861 * 265.00030 * 4 2 1
24 24 H 0.96997 * 119.99500 * 180.02562 * 8 7 5
25 25 H 1.08999 * 109.52155 * 57.69394 * 15 13 2
26 26 H 1.08996 * 109.57060 * 297.53652 * 15 13 2
27 27 H 1.09002 * 109.54068 * 183.15004 * 16 15 13
28 28 H 1.08996 * 109.54450 * 62.88578 * 16 15 13
29 29 H 1.09000 * 109.52619 * 297.07706 * 17 16 15
30 30 H 1.08998 * 109.51869 * 176.88944 * 17 16 15
31 31 H 1.09002 * 109.48198 * 62.37219 * 18 17 16
32 32 H 1.08999 * 109.48029 * 182.39833 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0182 -0.6907 -1.1962
5 6 2.1490 -0.0076 -2.3758
6 1 1.8919 1.0403 -2.4244
7 6 2.6111 -0.6622 -3.5093
8 7 2.9240 -1.9393 -3.4502
9 14 2.7890 0.2696 -5.1186
10 1 2.3743 1.6818 -4.9213
11 1 4.2056 0.2265 -5.5616
12 1 1.9278 -0.3590 -6.1522
13 6 2.0400 -0.7213 1.2492
14 1 3.1262 -0.8000 1.2055
15 6 1.6352 0.0692 2.4962
16 6 2.0969 -0.6894 3.7443
17 6 1.4917 -2.0964 3.7261
18 6 1.9020 -2.8033 2.4317
19 8 1.4693 -2.0303 1.3103
20 1 -0.3634 0.5139 -0.8899
21 1 -0.3634 -1.0275 0.0005
22 1 -0.3633 0.5140 0.8900
23 1 2.2488 -1.6319 -1.1526
24 1 3.2472 -2.3965 -4.2422
25 1 0.5514 0.1832 2.5193
26 1 2.1045 1.0527 2.4734
27 1 1.7629 -0.1603 4.6369
28 1 3.1845 -0.7602 3.7464
29 1 0.4050 -2.0262 3.7741
30 1 1.8592 -2.6620 4.5823
31 1 2.9865 -2.9093 2.4034
32 1 1.4393 -3.7894 2.3936
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000306998383.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:39
Heat of formation + Delta-G solvation = -72.840494 kcal
Electronic energy + Delta-G solvation = -13320.410494 eV
Core-core repulsion = 11086.757924 eV
Total energy + Delta-G solvation = -2233.652570 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-40.45565 -36.96998 -34.47450 -34.18662 -31.59183 -29.53385 -26.52905 -25.60448
-24.28668 -21.71380 -20.79837 -19.24593 -17.11295 -16.96629 -16.50406 -15.83993
-15.50933 -15.30841 -14.93326 -14.12278 -13.89505 -13.56865 -13.44647 -12.99516
-12.84783 -12.63123 -12.26262 -12.11713 -12.01277 -11.84136 -11.58047 -11.35482
-11.16812 -10.88477 -10.23285 -8.98986 -7.91454 -5.20203 1.46888 1.48577
1.58524 2.57189 2.97254 3.42339 3.75161 3.92261 4.01503 4.07133
4.27891 4.34705 4.40256 4.57053 4.62956 4.73274 4.85309 4.96074
4.99786 5.07938 5.12115 5.16060 5.24975 5.28731 5.44996 5.53362
5.66151 6.30122 6.48089 7.35749 8.13750 8.38098 9.32638
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.063392 B = 0.008462 C = 0.007988
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 441.587746 B = 3307.970332 C = 3504.298124
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.171 3.829
3 H 0.059 0.941
4 N -0.737 5.737
5 C -0.238 4.238
6 H 0.078 0.922
7 C -0.082 4.082
8 N -0.972 5.972
9 Si 0.975 3.025
10 H -0.264 1.264
11 H -0.293 1.293
12 H -0.295 1.295
13 C 0.092 3.908
14 H 0.038 0.962
15 C -0.144 4.144
16 C -0.119 4.119
17 C -0.147 4.147
18 C 0.048 3.952
19 O -0.396 6.396
20 H 0.033 0.967
21 H 0.038 0.962
22 H 0.071 0.929
23 H 0.373 0.627
24 H 0.249 0.751
25 H 0.077 0.923
26 H 0.082 0.918
27 H 0.087 0.913
28 H 0.062 0.938
29 H 0.069 0.931
30 H 0.092 0.908
31 H 0.043 0.957
32 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.597 2.806 15.363 15.832
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.063 3.937
3 H 0.077 0.923
4 N -0.377 5.377
5 C -0.370 4.370
6 H 0.096 0.904
7 C -0.273 4.273
8 N -0.623 5.623
9 Si 0.804 3.196
10 H -0.188 1.188
11 H -0.220 1.220
12 H -0.222 1.222
13 C 0.034 3.966
14 H 0.056 0.944
15 C -0.182 4.182
16 C -0.156 4.156
17 C -0.185 4.185
18 C -0.028 4.028
19 O -0.315 6.315
20 H 0.052 0.948
21 H 0.057 0.943
22 H 0.090 0.910
23 H 0.205 0.795
24 H 0.058 0.942
25 H 0.096 0.904
26 H 0.100 0.900
27 H 0.106 0.894
28 H 0.080 0.920
29 H 0.088 0.912
30 H 0.110 0.890
31 H 0.061 0.939
32 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -2.731 2.909 15.118 15.636
hybrid contribution 0.466 -0.187 -1.051 1.165
sum -2.265 2.722 14.067 14.505
Atomic orbital electron populations
1.22188 0.97576 1.00633 1.00275 1.20563 0.93499 0.94636 0.85011
0.92321 1.42640 1.78235 1.10489 1.06309 1.19733 1.34630 0.94221
0.88429 0.90448 1.25611 1.03189 0.96933 1.01597 1.69867 1.52816
1.10365 1.29245 0.85047 0.76772 0.78186 0.79617 1.18834 1.22014
1.22227 1.22349 0.95574 0.83411 0.95282 0.94411 1.22199 1.02665
0.99438 0.93852 1.21603 1.00569 0.95696 0.97775 1.22141 1.01740
0.96864 0.97748 1.22755 0.98811 0.95173 0.86090 1.87992 1.69600
1.26738 1.47187 0.94828 0.94304 0.90992 0.79522 0.94185 0.90446
0.89969 0.89398 0.91956 0.91184 0.88967 0.93904 0.88523
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.68 9.05 71.98 0.65 -5.03 16
2 C 0.17 7.18 2.76 44.99 0.12 7.31 16
3 H 0.06 2.40 8.08 -2.39 -0.02 2.38 16
4 N -0.74 -39.78 5.10 -322.93 -1.65 -41.43 16
5 C -0.24 -13.79 9.93 84.03 0.83 -12.95 16
6 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16
7 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16
8 N -0.97 -62.14 13.06 21.65 0.28 -61.85 16
9 Si 0.97 47.54 29.55 68.60 2.03 49.57 16
10 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16
11 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16
12 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16
13 C 0.09 3.27 2.47 30.63 0.08 3.35 16
14 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
15 C -0.14 -3.69 5.22 30.69 0.16 -3.53 16
16 C -0.12 -2.45 6.03 30.71 0.19 -2.26 16
17 C -0.15 -3.07 6.14 30.68 0.19 -2.88 16
18 C 0.05 1.34 6.84 72.01 0.49 1.83 16
19 O -0.40 -14.77 9.26 -148.98 -1.38 -16.15 16
20 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16
21 H 0.04 1.61 7.56 -2.39 -0.02 1.59 16
22 H 0.07 2.21 6.52 -2.38 -0.02 2.19 16
23 H 0.37 22.11 7.58 -92.71 -0.70 21.41 16
24 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16
25 H 0.08 1.94 6.47 -2.39 -0.02 1.92 16
26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16
27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16
28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16
31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16
32 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16
Total: -1.00 -67.64 257.86 2.84 -64.80
By element:
Atomic # 1 Polarization: 23.24 SS G_CDS: 0.38 Total: 23.62 kcal
Atomic # 6 Polarization: -21.74 SS G_CDS: 3.18 Total: -18.56 kcal
Atomic # 7 Polarization: -101.91 SS G_CDS: -1.37 Total: -103.28 kcal
Atomic # 8 Polarization: -14.77 SS G_CDS: -1.38 Total: -16.15 kcal
Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal
Total: -67.64 2.84 -64.80 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306998383.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.039 kcal
(2) G-P(sol) polarization free energy of solvation -67.644 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.683 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.801 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.840 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds