Wall clock time and date at job start Mon Mar 30 2020 02:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.49959 * 2 1 4 4 C 1.53040 * 109.52567 * 239.91768 * 2 1 3 5 5 C 1.53080 * 109.65611 * 178.73374 * 4 2 1 6 6 H 1.09002 * 109.38927 * 301.27278 * 5 4 2 7 7 C 1.52996 * 109.61868 * 181.16948 * 5 4 2 8 8 O 1.42899 * 109.47081 * 175.10658 * 7 5 4 9 9 C 1.53185 * 109.29449 * 61.15481 * 5 4 2 10 10 N 1.46926 * 108.89609 * 305.57321 * 9 5 4 11 11 C 1.36930 * 120.63383 * 233.56420 * 10 9 5 12 12 H 1.08001 * 120.00048 * 151.82243 * 11 10 9 13 13 C 1.38810 * 119.99962 * 331.81955 * 11 10 9 14 14 N 1.31613 * 120.00273 * 343.07970 * 13 11 10 15 15 Si 1.86803 * 119.99828 * 163.07261 * 13 11 10 16 16 H 1.48498 * 109.47234 * 90.00142 * 15 13 11 17 17 H 1.48503 * 109.47064 * 210.00127 * 15 13 11 18 18 H 1.48502 * 109.47357 * 330.00436 * 15 13 11 19 19 C 1.46928 * 118.73428 * 53.53798 * 10 9 5 20 20 H 1.08998 * 109.47168 * 299.93709 * 1 2 3 21 21 H 1.08998 * 109.47024 * 59.93753 * 1 2 3 22 22 H 1.09004 * 109.47012 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.45890 * 298.68608 * 4 2 1 24 24 H 1.09000 * 109.45953 * 58.65987 * 4 2 1 25 25 H 1.08998 * 109.47454 * 295.10726 * 7 5 4 26 26 H 1.09005 * 109.47435 * 55.10642 * 7 5 4 27 27 H 0.96707 * 114.00315 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.58442 * 185.71851 * 9 5 4 29 29 H 1.09001 * 109.58949 * 65.43473 * 9 5 4 30 30 H 0.96997 * 120.00271 * 180.02562 * 14 13 11 31 31 H 1.09006 * 109.58577 * 66.18627 * 19 10 9 32 32 H 1.09002 * 109.58869 * 186.45857 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0415 -0.7230 -1.2481 5 6 3.5720 -0.6972 -1.2672 6 1 3.9167 0.3368 -1.2579 7 6 4.0818 -1.3947 -2.5299 8 8 5.5035 -1.2696 -2.6022 9 6 4.1060 -1.4255 -0.0298 10 7 3.5047 -0.8281 1.1703 11 6 4.2932 -0.3770 2.1949 12 1 3.9489 0.4283 2.8270 13 6 5.5349 -0.9547 2.4213 14 7 5.8219 -2.1258 1.8938 15 14 6.7986 -0.0697 3.4745 16 1 6.6293 -0.4722 4.8939 17 1 8.1645 -0.4310 3.0171 18 1 6.6068 1.3976 3.3500 19 6 2.0413 -0.7234 1.2498 20 1 -0.3633 0.5128 0.8905 21 1 -0.3633 0.5148 -0.8894 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6979 -1.7574 -1.2350 24 1 1.6591 -0.2245 -2.1388 25 1 3.8112 -2.4500 -2.4965 26 1 3.6312 -0.9317 -3.4079 27 1 5.8963 -1.6893 -3.3798 28 1 5.1902 -1.3229 0.0150 29 1 3.8408 -2.4814 -0.0844 30 1 6.6894 -2.5297 2.0523 31 1 1.6057 -1.7215 1.2983 32 1 1.7631 -0.1598 2.1404 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307002726.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:29 Heat of formation + Delta-G solvation = -47.387039 kcal Electronic energy + Delta-G solvation = -13525.332081 eV Core-core repulsion = 11292.783257 eV Total energy + Delta-G solvation = -2232.548825 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.15721 -36.01093 -33.53219 -31.71461 -30.45542 -25.83250 -25.22420 -25.01268 -21.50756 -19.96733 -18.96997 -16.82526 -16.56951 -14.98024 -14.30827 -14.27038 -13.67973 -13.35725 -13.26215 -12.58654 -12.17657 -11.95716 -11.76304 -11.20069 -10.95041 -10.83775 -10.56631 -10.31253 -10.14078 -10.06779 -9.79857 -9.48773 -9.44873 -9.19663 -8.34847 -6.55476 -5.68193 -3.10831 3.44229 3.50869 3.53852 4.57965 4.71265 5.35689 5.46637 5.53320 5.57184 5.63023 5.74642 5.75590 6.01422 6.16114 6.24360 6.26652 6.33717 6.47266 6.51384 6.64965 6.79627 6.92254 6.99480 7.11991 7.53493 7.83383 7.93730 8.11952 8.57337 9.31964 9.96209 10.53104 11.40027 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.029245 B = 0.013789 C = 0.010114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.210896 B = 2030.188852 C = 2767.808795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.065 0.935 4 C -0.095 4.095 5 C -0.116 4.116 6 H 0.068 0.932 7 C 0.088 3.912 8 O -0.564 6.564 9 C 0.183 3.817 10 N -0.594 5.594 11 C -0.255 4.255 12 H 0.064 0.936 13 C 0.004 3.996 14 N -0.899 5.899 15 Si 0.901 3.099 16 H -0.288 1.288 17 H -0.289 1.289 18 H -0.280 1.280 19 C 0.151 3.849 20 H 0.050 0.950 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.031 0.969 27 H 0.367 0.633 28 H 0.094 0.906 29 H 0.013 0.987 30 H 0.253 0.747 31 H 0.016 0.984 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.216 1.662 -7.830 10.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.084 0.916 4 C -0.133 4.133 5 C -0.136 4.136 6 H 0.087 0.913 7 C 0.010 3.990 8 O -0.367 6.367 9 C 0.057 3.943 10 N -0.316 5.316 11 C -0.384 4.384 12 H 0.081 0.919 13 C -0.195 4.195 14 N -0.544 5.544 15 Si 0.731 3.269 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.205 1.205 19 C 0.024 3.976 20 H 0.069 0.931 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.212 0.788 28 H 0.112 0.888 29 H 0.031 0.969 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.151 1.888 -7.211 9.664 hybrid contribution 0.722 0.040 -0.084 0.728 sum -5.429 1.928 -7.294 9.295 Atomic orbital electron populations 1.21764 0.96267 1.01131 1.00707 1.21623 0.93906 1.00244 0.97230 0.91635 1.21411 0.95101 0.99887 0.96888 1.21863 0.94517 1.01146 0.96099 0.91345 1.22185 0.80812 0.98692 0.97354 1.86637 1.20835 1.80448 1.48789 1.20731 0.99825 0.92148 0.81560 1.44072 0.99354 1.71612 1.16512 1.19145 0.98680 1.11944 1.08669 0.91865 1.25034 0.99874 0.95370 0.99216 1.70027 1.22025 1.14547 1.47759 0.86327 0.81245 0.79485 0.79884 1.21486 1.21549 1.20515 1.20947 0.85951 0.96355 0.94313 0.93054 0.93578 0.93116 0.92752 0.93722 0.94239 0.95086 0.78797 0.88780 0.96934 0.93703 0.96657 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.20 37.16 0.34 -1.69 16 2 C -0.11 -1.99 2.87 -90.50 -0.26 -2.25 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.10 -1.68 4.45 -26.67 -0.12 -1.79 16 5 C -0.12 -2.37 2.58 -90.48 -0.23 -2.61 16 6 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 7 C 0.09 1.51 6.44 37.16 0.24 1.75 16 8 O -0.56 -10.22 13.30 -35.23 -0.47 -10.69 16 9 C 0.18 4.66 4.42 -3.71 -0.02 4.65 16 10 N -0.59 -15.75 3.00 -172.32 -0.52 -16.26 16 11 C -0.25 -7.35 9.58 -15.06 -0.14 -7.49 16 12 H 0.06 1.78 7.89 -52.49 -0.41 1.37 16 13 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 14 N -0.90 -27.32 11.20 55.49 0.62 -26.70 16 15 Si 0.90 22.58 29.59 -169.99 -5.03 17.56 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 C 0.15 3.32 5.80 -3.71 -0.02 3.30 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.37 4.49 9.12 45.56 0.42 4.91 16 28 H 0.09 2.75 5.90 -51.93 -0.31 2.44 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 257.38 15.07 3.88 3.88 Total: -1.00 -32.12 257.38 -6.32 -38.44 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.50 Total: -0.12 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -0.30 Total: -6.11 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.11 Total: -42.96 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.47 Total: -10.69 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.12 -6.32 -38.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307002726.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.951 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds